Wall clock time and date at job start Mon Mar 30 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.90183 * 2 1 4 4 C 1.53986 * 110.08228 * 238.78816 * 2 1 3 5 5 H 1.09010 * 110.30853 * 120.31405 * 4 2 1 6 6 C 1.52999 * 110.31243 * 358.24331 * 4 2 1 7 7 O 1.42893 * 109.47452 * 174.99723 * 6 4 2 8 8 C 1.54595 * 105.13852 * 239.32587 * 4 2 1 9 9 C 1.54934 * 102.92624 * 338.04349 * 8 4 2 10 10 N 1.47902 * 109.91844 * 121.09627 * 2 1 3 11 11 C 1.46904 * 111.00208 * 265.39528 * 10 2 1 12 12 C 1.52998 * 109.46906 * 58.43438 * 11 10 2 13 13 C 1.53002 * 109.47413 * 174.53729 * 12 11 10 14 14 C 1.50692 * 109.47299 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00031 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47267 * 89.99763 * 18 16 14 20 20 H 1.48502 * 109.46795 * 210.00108 * 18 16 14 21 21 H 1.48498 * 109.46767 * 329.99724 * 18 16 14 22 22 H 1.09003 * 109.46899 * 300.35024 * 1 2 3 23 23 H 1.08997 * 109.47768 * 60.35581 * 1 2 3 24 24 H 1.09005 * 109.46900 * 180.36046 * 1 2 3 25 25 H 1.08999 * 109.46944 * 295.00251 * 6 4 2 26 26 H 1.09006 * 109.46873 * 55.00012 * 6 4 2 27 27 H 0.96701 * 114.00041 * 179.97438 * 7 6 4 28 28 H 1.09004 * 110.72555 * 219.68292 * 8 4 2 29 29 H 1.09005 * 110.72322 * 96.40582 * 8 4 2 30 30 H 1.09001 * 110.66644 * 278.97786 * 9 8 4 31 31 H 1.08991 * 110.66970 * 155.84494 * 9 8 4 32 32 H 1.08995 * 109.47093 * 178.43257 * 11 10 2 33 33 H 1.08993 * 109.47166 * 298.43534 * 11 10 2 34 34 H 1.09004 * 109.46980 * 294.53651 * 12 11 10 35 35 H 1.09003 * 109.47616 * 54.53155 * 12 11 10 36 36 H 1.09005 * 109.46771 * 300.00426 * 13 12 11 37 37 H 1.09001 * 109.46764 * 59.99461 * 13 12 11 38 38 H 0.97000 * 119.99853 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0587 -0.7494 -1.2369 5 1 2.6733 -0.0870 -1.8466 6 6 0.8941 -1.3007 -2.0619 7 8 1.3976 -1.8901 -3.2623 8 6 2.9124 -1.9082 -0.6725 9 6 3.2709 -1.4131 0.7511 10 7 2.0339 -0.7182 1.1907 11 6 2.3167 0.2161 2.2885 12 6 1.0434 0.9865 2.6434 13 6 1.3013 1.8593 3.8733 14 6 0.0473 2.6185 4.2224 15 1 -0.8443 2.4916 3.6265 16 6 0.0384 3.4752 5.3028 17 7 1.1243 3.6300 6.0282 18 14 -1.5163 4.4158 5.7361 19 1 -2.3331 3.6133 6.6815 20 1 -1.1522 5.7084 6.3702 21 1 -2.2992 4.6736 4.5009 22 1 -0.3633 0.5193 0.8869 23 1 -0.3634 0.5083 -0.8931 24 1 -0.3633 -1.0277 0.0065 25 1 0.3630 -2.0553 -1.4817 26 1 0.2114 -0.4893 -2.3142 27 1 0.7129 -2.2615 -3.8354 28 1 3.8131 -2.0502 -1.2697 29 1 2.3304 -2.8287 -0.6257 30 1 4.1106 -0.7190 0.7169 31 1 3.4928 -2.2550 1.4067 32 1 2.6593 -0.3409 3.1605 33 1 3.0911 0.9175 1.9782 34 1 0.7551 1.6185 1.8034 35 1 0.2406 0.2816 2.8599 36 1 1.5897 1.2272 4.7133 37 1 2.1040 2.5641 3.6567 38 1 1.1179 4.2324 6.7884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385722774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:31 Heat of formation + Delta-G solvation = -62.473986 kcal Electronic energy + Delta-G solvation = -16210.682480 eV Core-core repulsion = 13666.404197 eV Total energy + Delta-G solvation = -2544.278282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.63521 -36.73740 -34.33175 -32.59292 -31.74364 -30.09855 -26.90929 -25.55565 -24.51298 -22.59818 -20.97331 -20.08974 -18.82144 -17.67324 -16.42266 -15.83301 -15.32436 -14.76651 -14.42112 -14.25244 -14.13735 -13.35154 -12.62755 -12.40312 -12.35625 -12.17354 -11.97682 -11.62298 -11.32508 -11.10915 -11.00483 -10.77250 -10.70789 -10.48094 -10.41868 -10.12369 -9.91949 -9.64577 -9.25376 -9.02372 -8.32359 -8.14196 -5.97664 -3.99667 3.33316 3.39326 3.42643 4.05546 4.20697 4.48186 4.64934 4.70706 5.07519 5.30069 5.32362 5.38213 5.38906 5.50992 5.60267 5.71546 5.75605 5.78243 5.89172 5.95010 5.95596 6.13145 6.21979 6.30882 6.33536 6.50900 6.72490 6.82875 7.13213 7.26333 7.43886 7.48899 7.70603 7.86144 8.02849 8.46098 9.07506 9.64177 11.13860 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.005121 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.045388 B = 5466.349955 C = 5952.046509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 H 0.056 0.944 4 C -0.096 4.096 5 H 0.077 0.923 6 C 0.083 3.917 7 O -0.578 6.578 8 C -0.109 4.109 9 C 0.030 3.970 10 N -0.513 5.513 11 C 0.047 3.953 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.376 0.624 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -10.158 -15.080 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.037 4.037 3 H 0.074 0.926 4 C -0.115 4.115 5 H 0.096 0.904 6 C 0.006 3.994 7 O -0.384 6.384 8 C -0.147 4.147 9 C -0.097 4.097 10 N -0.238 5.238 11 C -0.080 4.080 12 C -0.146 4.146 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.222 0.778 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.432 -10.223 -14.454 17.762 hybrid contribution -0.688 1.073 -0.077 1.277 sum 0.745 -9.150 -14.530 17.187 Atomic orbital electron populations 1.22126 0.94111 1.02259 1.02446 1.22257 0.96578 0.96118 0.88738 0.92570 1.22006 0.96486 0.97466 0.95556 0.90416 1.22466 0.95429 0.96375 0.85122 1.86457 1.38447 1.79304 1.34160 1.22462 0.99406 0.97926 0.94946 1.23236 0.92056 0.98512 0.95937 1.64821 1.25694 1.27165 1.06075 1.22450 0.98782 0.93487 0.93317 1.21803 0.95123 0.97741 0.99919 1.19088 0.96923 0.94000 0.91652 1.21241 0.97616 1.24429 1.12304 0.92728 1.25025 0.96116 0.96966 0.96374 1.69965 1.27471 1.37694 1.18476 0.86608 0.83558 0.79349 0.78579 1.20658 1.21267 1.19905 0.90508 0.92861 0.92166 0.92945 0.93146 0.77765 0.91347 0.90899 0.93979 0.90203 0.90959 0.95337 0.93182 0.92428 0.96596 0.96882 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.94 37.16 0.29 -1.77 16 2 C 0.07 1.02 2.49 -66.65 -0.17 0.86 16 3 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 4 C -0.10 -1.18 3.26 -89.27 -0.29 -1.47 16 5 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 6 C 0.08 0.89 5.16 37.16 0.19 1.08 16 7 O -0.58 -5.97 13.55 -35.23 -0.48 -6.45 16 8 C -0.11 -1.31 6.50 -24.87 -0.16 -1.47 16 9 C 0.03 0.40 6.56 -1.90 -0.01 0.39 16 10 N -0.51 -8.01 5.01 -222.58 -1.12 -9.13 16 11 C 0.05 0.85 4.82 -3.82 -0.02 0.83 16 12 C -0.11 -2.27 3.71 -26.73 -0.10 -2.37 16 13 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 14 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H 0.08 1.22 5.16 -51.93 -0.27 0.95 16 23 H 0.05 0.62 6.75 -51.93 -0.35 0.27 16 24 H 0.06 0.77 6.83 -51.93 -0.35 0.42 16 25 H 0.05 0.55 6.95 -51.93 -0.36 0.19 16 26 H 0.05 0.50 6.45 -51.93 -0.33 0.16 16 27 H 0.38 2.13 9.12 45.56 0.42 2.55 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 30 H 0.04 0.56 7.94 -51.93 -0.41 0.14 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 34 H 0.05 1.03 6.00 -51.93 -0.31 0.72 16 35 H 0.06 1.23 7.75 -51.93 -0.40 0.82 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -31.36 293.73 -7.93 -39.29 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.66 Total: -1.31 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.81 Total: -17.12 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.38 Total: -35.66 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.48 Total: -6.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.36 -7.93 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.186 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds