Wall clock time and date at job start Mon Mar 30 2020 03:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.90183 * 2 1 4 4 C 1.53986 * 110.08228 * 238.78816 * 2 1 3 5 5 H 1.09010 * 110.30853 * 120.31405 * 4 2 1 6 6 C 1.52999 * 110.31243 * 358.24331 * 4 2 1 7 7 O 1.42893 * 109.47452 * 174.99723 * 6 4 2 8 8 C 1.54595 * 105.13852 * 239.32587 * 4 2 1 9 9 C 1.54934 * 102.92624 * 338.04349 * 8 4 2 10 10 N 1.47902 * 109.91844 * 121.09627 * 2 1 3 11 11 C 1.46904 * 111.00208 * 265.39528 * 10 2 1 12 12 C 1.52998 * 109.46906 * 58.43438 * 11 10 2 13 13 C 1.53002 * 109.47413 * 174.53729 * 12 11 10 14 14 C 1.50692 * 109.47299 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00031 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47267 * 89.99763 * 18 16 14 20 20 H 1.48502 * 109.46795 * 210.00108 * 18 16 14 21 21 H 1.48498 * 109.46767 * 329.99724 * 18 16 14 22 22 H 1.09003 * 109.46899 * 300.35024 * 1 2 3 23 23 H 1.08997 * 109.47768 * 60.35581 * 1 2 3 24 24 H 1.09005 * 109.46900 * 180.36046 * 1 2 3 25 25 H 1.08999 * 109.46944 * 295.00251 * 6 4 2 26 26 H 1.09006 * 109.46873 * 55.00012 * 6 4 2 27 27 H 0.96701 * 114.00041 * 179.97438 * 7 6 4 28 28 H 1.09004 * 110.72555 * 219.68292 * 8 4 2 29 29 H 1.09005 * 110.72322 * 96.40582 * 8 4 2 30 30 H 1.09001 * 110.66644 * 278.97786 * 9 8 4 31 31 H 1.08991 * 110.66970 * 155.84494 * 9 8 4 32 32 H 1.08995 * 109.47093 * 178.43257 * 11 10 2 33 33 H 1.08993 * 109.47166 * 298.43534 * 11 10 2 34 34 H 1.09004 * 109.46980 * 294.53651 * 12 11 10 35 35 H 1.09003 * 109.47616 * 54.53155 * 12 11 10 36 36 H 1.09005 * 109.46771 * 300.00426 * 13 12 11 37 37 H 1.09001 * 109.46764 * 59.99461 * 13 12 11 38 38 H 0.97000 * 119.99853 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0587 -0.7494 -1.2369 5 1 2.6733 -0.0870 -1.8466 6 6 0.8941 -1.3007 -2.0619 7 8 1.3976 -1.8901 -3.2623 8 6 2.9124 -1.9082 -0.6725 9 6 3.2709 -1.4131 0.7511 10 7 2.0339 -0.7182 1.1907 11 6 2.3167 0.2161 2.2885 12 6 1.0434 0.9865 2.6434 13 6 1.3013 1.8593 3.8733 14 6 0.0473 2.6185 4.2224 15 1 -0.8443 2.4916 3.6265 16 6 0.0384 3.4752 5.3028 17 7 1.1243 3.6300 6.0282 18 14 -1.5163 4.4158 5.7361 19 1 -2.3331 3.6133 6.6815 20 1 -1.1522 5.7084 6.3702 21 1 -2.2992 4.6736 4.5009 22 1 -0.3633 0.5193 0.8869 23 1 -0.3634 0.5083 -0.8931 24 1 -0.3633 -1.0277 0.0065 25 1 0.3630 -2.0553 -1.4817 26 1 0.2114 -0.4893 -2.3142 27 1 0.7129 -2.2615 -3.8354 28 1 3.8131 -2.0502 -1.2697 29 1 2.3304 -2.8287 -0.6257 30 1 4.1106 -0.7190 0.7169 31 1 3.4928 -2.2550 1.4067 32 1 2.6593 -0.3409 3.1605 33 1 3.0911 0.9175 1.9782 34 1 0.7551 1.6185 1.8034 35 1 0.2406 0.2816 2.8599 36 1 1.5897 1.2272 4.7133 37 1 2.1040 2.5641 3.6567 38 1 1.1179 4.2324 6.7884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385722774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:29 Heat of formation + Delta-G solvation = -85.287820 kcal Electronic energy + Delta-G solvation = -16211.671762 eV Core-core repulsion = 13666.404197 eV Total energy + Delta-G solvation = -2545.267564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74380 -37.64815 -36.06988 -34.33755 -32.94704 -31.64352 -28.38089 -27.02622 -25.54077 -24.35877 -22.10049 -21.80118 -19.93555 -18.62571 -18.36622 -17.04763 -16.58145 -16.43253 -15.75771 -15.56599 -15.30369 -14.50284 -14.34777 -13.89831 -13.79536 -13.40138 -13.14152 -12.99499 -12.92436 -12.77822 -12.49990 -12.26006 -12.00692 -11.92328 -11.62095 -11.48394 -11.34654 -11.15629 -11.07041 -10.71665 -10.55493 -9.39825 -8.20151 -6.31258 1.39877 1.41545 1.52543 2.40910 3.00004 3.13109 3.26267 3.64497 3.71513 4.14587 4.21601 4.28079 4.28430 4.42320 4.49623 4.52877 4.63669 4.69193 4.76433 4.83280 4.85658 4.90835 4.96546 5.10052 5.13691 5.17625 5.25738 5.31452 5.47107 5.52581 5.73337 5.85131 6.02849 6.09444 6.27150 6.85433 6.95737 7.38024 8.92012 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.005121 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.045388 B = 5466.349955 C = 5952.046509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 H 0.040 0.960 4 C -0.095 4.095 5 H 0.075 0.925 6 C 0.089 3.911 7 O -0.592 6.592 8 C -0.102 4.102 9 C 0.028 3.972 10 N -0.519 5.519 11 C 0.058 3.942 12 C -0.089 4.089 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.262 1.262 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.397 0.603 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.054 0.946 36 H -0.009 1.009 37 H -0.012 1.012 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -10.725 -16.491 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 H 0.058 0.942 4 C -0.114 4.114 5 H 0.094 0.906 6 C 0.011 3.989 7 O -0.401 6.401 8 C -0.139 4.139 9 C -0.100 4.100 10 N -0.244 5.244 11 C -0.070 4.070 12 C -0.126 4.126 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.288 -10.812 -15.894 19.225 hybrid contribution -0.290 1.222 0.333 1.299 sum -0.001 -9.590 -15.561 18.279 Atomic orbital electron populations 1.22085 0.93528 1.02726 1.02175 1.22313 0.97055 0.95508 0.89209 0.94189 1.21963 0.97226 0.97370 0.94815 0.90623 1.22344 0.94510 0.96775 0.85242 1.86399 1.39913 1.79473 1.34293 1.22428 0.99895 0.97775 0.93847 1.23332 0.91024 0.98486 0.97138 1.64805 1.27026 1.26405 1.06124 1.22184 0.96875 0.93570 0.94388 1.21528 0.96511 0.97071 0.97522 1.18998 0.95512 0.93747 0.93066 1.21668 0.98470 1.24981 1.12763 0.92194 1.25994 0.99757 0.97946 0.96156 1.70100 1.29885 1.38493 1.19036 0.85441 0.79100 0.77782 0.78702 1.19709 1.20724 1.18659 0.93105 0.90784 0.91251 0.92574 0.92252 0.75379 0.90169 0.90488 0.94025 0.89403 0.91483 0.95780 0.92806 0.92703 0.99103 0.99363 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 7.94 71.98 0.57 -3.23 16 2 C 0.07 1.86 2.49 45.06 0.11 1.97 16 3 H 0.04 1.23 7.44 -2.38 -0.02 1.21 16 4 C -0.09 -2.14 3.26 -9.92 -0.03 -2.17 16 5 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 6 C 0.09 1.64 5.16 71.98 0.37 2.01 16 7 O -0.59 -10.51 13.55 -148.98 -2.02 -12.53 16 8 C -0.10 -2.20 6.50 31.80 0.21 -1.99 16 9 C 0.03 0.70 6.56 86.65 0.57 1.27 16 10 N -0.52 -15.82 5.01 -858.12 -4.30 -20.12 16 11 C 0.06 2.12 4.82 86.30 0.42 2.53 16 12 C -0.09 -3.79 3.71 30.59 0.11 -3.67 16 13 C 0.02 1.33 4.97 29.85 0.15 1.47 16 14 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 18 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H 0.05 1.57 5.16 -2.39 -0.01 1.56 16 23 H 0.07 1.57 6.75 -2.39 -0.02 1.55 16 24 H 0.07 1.64 6.83 -2.38 -0.02 1.63 16 25 H 0.06 1.01 6.95 -2.39 -0.02 0.99 16 26 H 0.06 0.99 6.45 -2.38 -0.02 0.98 16 27 H 0.40 3.30 9.12 -74.06 -0.68 2.63 16 28 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 1.62 7.76 -2.38 -0.02 1.60 16 30 H 0.04 1.06 7.94 -2.39 -0.02 1.04 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 34 H 0.05 2.24 6.00 -2.39 -0.01 2.23 16 35 H 0.05 2.36 7.75 -2.39 -0.02 2.34 16 36 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -66.97 293.73 -0.49 -67.46 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.35 Total: 8.58 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.17 Total: -32.60 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -4.02 Total: -77.69 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -2.02 Total: -12.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.97 -0.49 -67.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.827 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds