Wall clock time and date at job start Mon Mar 30 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.87849 * 2 1 4 4 C 1.54312 * 110.02819 * 121.12333 * 2 1 3 5 5 H 1.09007 * 110.70523 * 23.20313 * 4 2 1 6 6 C 1.53004 * 110.70664 * 260.14960 * 4 2 1 7 7 O 1.42896 * 109.47166 * 174.99657 * 6 4 2 8 8 C 1.55139 * 103.02341 * 141.76635 * 4 2 1 9 9 C 1.54903 * 101.65117 * 324.34556 * 8 4 2 10 10 N 1.47446 * 109.88924 * 238.97311 * 2 1 3 11 11 C 1.46899 * 110.99937 * 3.68942 * 10 2 1 12 12 C 1.52997 * 109.47254 * 169.99935 * 11 10 2 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46778 * 60.00380 * 18 16 14 20 20 H 1.48503 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00322 * 18 16 14 22 22 H 1.09000 * 109.47168 * 179.57168 * 1 2 3 23 23 H 1.08998 * 109.47135 * 299.57336 * 1 2 3 24 24 H 1.09003 * 109.47484 * 59.57380 * 1 2 3 25 25 H 1.08996 * 109.46980 * 295.00043 * 6 4 2 26 26 H 1.09006 * 109.46944 * 54.99570 * 6 4 2 27 27 H 0.96701 * 113.99995 * 180.02562 * 7 6 4 28 28 H 1.08993 * 110.98967 * 82.43940 * 8 4 2 29 29 H 1.09008 * 110.98982 * 206.21750 * 8 4 2 30 30 H 1.09001 * 110.37826 * 278.23995 * 9 8 4 31 31 H 1.09001 * 110.37545 * 155.89939 * 9 8 4 32 32 H 1.09002 * 109.47043 * 290.00006 * 11 10 2 33 33 H 1.09001 * 109.47354 * 50.00068 * 11 10 2 34 34 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 35 35 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 38 38 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7494 1.2411 5 1 1.3099 -1.4464 1.6182 6 6 2.4737 0.2384 2.3333 7 8 2.8479 -0.4817 3.5095 8 6 3.2936 -1.5097 0.6907 9 6 2.8222 -1.8799 -0.7377 10 7 2.0315 -0.7147 -1.1881 11 6 0.9237 -1.1342 -2.0568 12 6 1.4831 -1.6446 -3.3862 13 6 0.3293 -2.0821 -4.2907 14 6 0.8802 -2.5843 -5.6004 15 1 1.9468 -2.5911 -5.7705 16 6 0.0229 -3.0360 -6.5812 17 7 -1.2758 -3.0282 -6.3739 18 14 0.7059 -3.6578 -8.2049 19 1 1.6044 -4.8132 -7.9539 20 1 -0.4141 -4.0826 -9.0828 21 1 1.4701 -2.5715 -8.8690 22 1 -0.3633 -1.0276 -0.0077 23 1 -0.3633 0.5072 0.8938 24 1 -0.3634 0.5204 -0.8861 25 1 3.3200 0.8304 1.9850 26 1 1.6377 0.8993 2.5624 27 1 3.1231 0.0824 4.2451 28 1 4.1685 -0.8607 0.6572 29 1 3.4959 -2.4043 1.2799 30 1 2.1993 -2.7740 -0.7120 31 1 3.6799 -2.0326 -1.3927 32 1 0.3614 -1.9307 -1.5694 33 1 0.2653 -0.2853 -2.2416 34 1 2.0453 -0.8481 -3.8736 35 1 2.1414 -2.4934 -3.2015 36 1 -0.2326 -2.8788 -3.8032 37 1 -0.3294 -1.2335 -4.4756 38 1 -1.8790 -3.3456 -7.0640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385722775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:38 Heat of formation + Delta-G solvation = -63.761764 kcal Electronic energy + Delta-G solvation = -16043.703448 eV Core-core repulsion = 13499.369323 eV Total energy + Delta-G solvation = -2544.334124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.68838 -36.87789 -34.28544 -32.53280 -31.46275 -30.40877 -27.07603 -25.91567 -23.77221 -22.93870 -20.97054 -20.10320 -19.09951 -17.43510 -16.26121 -15.83550 -15.53221 -14.81543 -14.57033 -14.38820 -13.76210 -13.57216 -13.12985 -12.60971 -12.21978 -12.02211 -11.98455 -11.63588 -11.26676 -11.04156 -10.86529 -10.83720 -10.75498 -10.58269 -10.49202 -10.28117 -10.10508 -9.55877 -9.27044 -9.01589 -8.29800 -7.98431 -5.95423 -3.97244 3.36705 3.40494 3.43532 3.93371 4.20333 4.50484 4.57980 4.72598 4.97990 5.18197 5.23661 5.30799 5.40181 5.40397 5.43262 5.58141 5.68101 5.78911 5.83438 5.94125 6.02587 6.09004 6.13518 6.24689 6.38852 6.44210 6.76468 6.86619 7.17374 7.33991 7.40289 7.47779 7.73466 7.89241 8.05478 8.49328 9.09827 9.66440 11.16071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.063350 B = 0.004554 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.884999 B = 6147.433249 C = 6421.854689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.081 0.919 4 C -0.107 4.107 5 H 0.082 0.918 6 C 0.088 3.912 7 O -0.574 6.574 8 C -0.118 4.118 9 C 0.042 3.958 10 N -0.524 5.524 11 C 0.047 3.953 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.377 0.623 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 6.680 17.369 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.033 4.033 3 H 0.099 0.901 4 C -0.127 4.127 5 H 0.100 0.900 6 C 0.010 3.990 7 O -0.379 6.379 8 C -0.156 4.156 9 C -0.086 4.086 10 N -0.248 5.248 11 C -0.080 4.080 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.223 0.777 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.374 6.457 16.587 18.906 hybrid contribution -0.179 -0.412 -0.152 0.474 sum 6.195 6.045 16.435 18.574 Atomic orbital electron populations 1.22398 0.95725 1.02585 1.02174 1.22345 0.93921 0.98596 0.88408 0.90061 1.22480 0.98484 0.97605 0.94120 0.89973 1.22164 0.98140 0.93445 0.85267 1.86494 1.89074 1.38025 1.24275 1.22705 0.97143 1.00240 0.95528 1.23069 0.98082 0.92572 0.94861 1.63801 1.22809 1.23279 1.14935 1.22587 0.92096 0.98970 0.94319 1.21630 0.99989 0.99356 0.93287 1.19065 0.92829 0.96196 0.93448 1.21231 0.93041 1.41657 0.99702 0.92751 1.25026 0.94853 0.95976 0.98646 1.69959 1.01925 1.47597 1.34226 0.86661 0.78431 0.79291 0.83637 1.20275 1.21333 1.20230 0.92113 0.92680 0.91153 0.93347 0.93700 0.77693 0.90975 0.90921 0.93453 0.90162 0.95051 0.90737 0.92731 0.93673 0.96908 0.96674 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 7.84 37.15 0.29 -1.82 16 2 C 0.08 0.97 3.61 -66.73 -0.24 0.73 16 3 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 4 C -0.11 -1.26 2.74 -88.80 -0.24 -1.50 16 5 H 0.08 1.04 7.86 -51.92 -0.41 0.63 16 6 C 0.09 0.83 6.33 37.16 0.24 1.07 16 7 O -0.57 -5.55 13.60 -35.23 -0.48 -6.03 16 8 C -0.12 -1.44 6.47 -24.60 -0.16 -1.60 16 9 C 0.04 0.61 5.78 -2.30 -0.01 0.59 16 10 N -0.52 -8.22 5.16 -223.36 -1.15 -9.37 16 11 C 0.05 0.85 3.69 -3.83 -0.01 0.84 16 12 C -0.10 -2.26 5.20 -26.74 -0.14 -2.40 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.06 0.81 6.91 -51.93 -0.36 0.45 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 25 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.38 1.83 9.12 45.56 0.42 2.25 16 28 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.05 0.72 7.62 -51.93 -0.40 0.33 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.03 0.57 6.81 -51.93 -0.35 0.22 16 33 H 0.07 1.33 6.07 -51.93 -0.32 1.01 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.97 7.49 -51.93 -0.39 0.58 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -31.85 299.22 -8.11 -39.96 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.87 Total: -1.91 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.83 Total: -17.48 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.42 Total: -36.10 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.48 Total: -6.03 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.85 -8.11 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.802 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds