Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.87849 * 2 1 4 4 C 1.54312 * 110.02819 * 121.12333 * 2 1 3 5 5 H 1.09007 * 110.70523 * 23.20313 * 4 2 1 6 6 C 1.53004 * 110.70664 * 260.14960 * 4 2 1 7 7 O 1.42896 * 109.47166 * 174.99657 * 6 4 2 8 8 C 1.55139 * 103.02341 * 141.76635 * 4 2 1 9 9 C 1.54903 * 101.65117 * 324.34556 * 8 4 2 10 10 N 1.47446 * 109.88924 * 238.97311 * 2 1 3 11 11 C 1.46899 * 110.99937 * 3.68942 * 10 2 1 12 12 C 1.52997 * 109.47254 * 169.99935 * 11 10 2 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46778 * 60.00380 * 18 16 14 20 20 H 1.48503 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00322 * 18 16 14 22 22 H 1.09000 * 109.47168 * 179.57168 * 1 2 3 23 23 H 1.08998 * 109.47135 * 299.57336 * 1 2 3 24 24 H 1.09003 * 109.47484 * 59.57380 * 1 2 3 25 25 H 1.08996 * 109.46980 * 295.00043 * 6 4 2 26 26 H 1.09006 * 109.46944 * 54.99570 * 6 4 2 27 27 H 0.96701 * 113.99995 * 180.02562 * 7 6 4 28 28 H 1.08993 * 110.98967 * 82.43940 * 8 4 2 29 29 H 1.09008 * 110.98982 * 206.21750 * 8 4 2 30 30 H 1.09001 * 110.37826 * 278.23995 * 9 8 4 31 31 H 1.09001 * 110.37545 * 155.89939 * 9 8 4 32 32 H 1.09002 * 109.47043 * 290.00006 * 11 10 2 33 33 H 1.09001 * 109.47354 * 50.00068 * 11 10 2 34 34 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 35 35 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 36 36 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 37 37 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 38 38 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7494 1.2411 5 1 1.3099 -1.4464 1.6182 6 6 2.4737 0.2384 2.3333 7 8 2.8479 -0.4817 3.5095 8 6 3.2936 -1.5097 0.6907 9 6 2.8222 -1.8799 -0.7377 10 7 2.0315 -0.7147 -1.1881 11 6 0.9237 -1.1342 -2.0568 12 6 1.4831 -1.6446 -3.3862 13 6 0.3293 -2.0821 -4.2907 14 6 0.8802 -2.5843 -5.6004 15 1 1.9468 -2.5911 -5.7705 16 6 0.0229 -3.0360 -6.5812 17 7 -1.2758 -3.0282 -6.3739 18 14 0.7059 -3.6578 -8.2049 19 1 1.6044 -4.8132 -7.9539 20 1 -0.4141 -4.0826 -9.0828 21 1 1.4701 -2.5715 -8.8690 22 1 -0.3633 -1.0276 -0.0077 23 1 -0.3633 0.5072 0.8938 24 1 -0.3634 0.5204 -0.8861 25 1 3.3200 0.8304 1.9850 26 1 1.6377 0.8993 2.5624 27 1 3.1231 0.0824 4.2451 28 1 4.1685 -0.8607 0.6572 29 1 3.4959 -2.4043 1.2799 30 1 2.1993 -2.7740 -0.7120 31 1 3.6799 -2.0326 -1.3927 32 1 0.3614 -1.9307 -1.5694 33 1 0.2653 -0.2853 -2.2416 34 1 2.0453 -0.8481 -3.8736 35 1 2.1414 -2.4934 -3.2015 36 1 -0.2326 -2.8788 -3.8032 37 1 -0.3294 -1.2335 -4.4756 38 1 -1.8790 -3.3456 -7.0640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385722775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -87.032444 kcal Electronic energy + Delta-G solvation = -16044.712540 eV Core-core repulsion = 13499.369323 eV Total energy + Delta-G solvation = -2545.343217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79045 -37.69284 -36.07391 -34.29998 -32.54969 -31.98676 -28.50667 -27.33299 -25.14703 -24.29909 -22.50735 -21.37525 -20.36206 -18.44303 -18.16672 -16.94604 -16.68003 -16.42257 -16.14687 -15.56525 -14.97904 -14.69755 -14.34868 -14.27879 -13.62197 -13.43932 -13.36017 -13.07569 -12.80703 -12.56167 -12.42938 -12.21972 -12.10832 -11.82937 -11.75479 -11.59010 -11.39531 -11.29085 -11.08612 -10.80534 -10.55024 -9.24032 -8.20286 -6.31575 1.39512 1.43080 1.51026 2.40921 3.00226 3.12512 3.20768 3.64918 3.72895 4.09297 4.18942 4.26142 4.30720 4.38923 4.46723 4.48699 4.53723 4.69156 4.73014 4.73719 4.83851 4.93504 4.99530 5.05870 5.08827 5.16561 5.22736 5.27605 5.41062 5.51730 5.73592 5.85188 6.09684 6.12957 6.28490 6.84710 6.94810 7.37558 8.91532 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.063350 B = 0.004554 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.884999 B = 6147.433249 C = 6421.854689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 H 0.096 0.904 4 C -0.105 4.105 5 H 0.070 0.930 6 C 0.092 3.908 7 O -0.593 6.593 8 C -0.109 4.109 9 C 0.037 3.963 10 N -0.533 5.533 11 C 0.062 3.938 12 C -0.090 4.090 13 C 0.027 3.973 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.266 1.266 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.398 0.602 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.043 0.957 36 H -0.012 1.012 37 H -0.007 1.007 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 7.337 18.029 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 H 0.114 0.886 4 C -0.124 4.124 5 H 0.089 0.911 6 C 0.015 3.985 7 O -0.401 6.401 8 C -0.147 4.147 9 C -0.091 4.091 10 N -0.257 5.257 11 C -0.066 4.066 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.191 1.191 22 H 0.064 0.936 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.247 0.753 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.007 0.993 37 H 0.011 0.989 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.606 7.131 17.280 20.181 hybrid contribution -0.571 -0.608 -0.305 0.888 sum 7.034 6.523 16.975 19.498 Atomic orbital electron populations 1.22354 0.95466 1.01817 1.02969 1.22440 0.94200 0.98937 0.87745 0.88601 1.22421 0.97792 0.97774 0.94419 0.91125 1.22083 0.99183 0.92630 0.84650 1.86433 1.89260 1.39339 1.25084 1.22655 0.97681 1.00707 0.93694 1.23107 0.97568 0.91820 0.96568 1.63738 1.21907 1.23629 1.16406 1.22289 0.92598 0.98635 0.93053 1.21383 0.97958 0.99126 0.94312 1.18958 0.93845 0.94439 0.93822 1.21665 0.93450 1.42209 1.00978 0.92393 1.25994 0.95098 0.95917 1.02795 1.70092 1.03358 1.48252 1.35686 0.85490 0.77963 0.79037 0.78499 1.19200 1.20644 1.19111 0.93612 0.90180 0.92103 0.92216 0.92175 0.75254 0.89964 0.90506 0.94785 0.90561 0.95756 0.90637 0.93073 0.93781 0.99342 0.98878 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 7.84 71.98 0.56 -3.41 16 2 C 0.07 1.79 3.61 45.25 0.16 1.96 16 3 H 0.10 2.07 7.82 -2.39 -0.02 2.06 16 4 C -0.10 -2.25 2.74 -9.61 -0.03 -2.27 16 5 H 0.07 1.69 7.86 -2.38 -0.02 1.67 16 6 C 0.09 1.47 6.33 71.98 0.46 1.93 16 7 O -0.59 -9.83 13.60 -148.98 -2.03 -11.86 16 8 C -0.11 -2.48 6.47 31.98 0.21 -2.28 16 9 C 0.04 1.06 5.78 86.77 0.50 1.56 16 10 N -0.53 -16.35 5.16 -860.57 -4.44 -20.79 16 11 C 0.06 2.27 3.69 86.30 0.32 2.58 16 12 C -0.09 -3.96 5.20 30.59 0.16 -3.80 16 13 C 0.03 1.48 4.97 29.84 0.15 1.63 16 14 C -0.55 -32.22 9.11 25.60 0.23 -31.98 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 18 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H 0.04 1.21 6.91 -2.39 -0.02 1.19 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.55 6.43 -2.39 -0.02 1.53 16 25 H 0.06 0.83 8.00 -2.39 -0.02 0.81 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.40 2.70 9.12 -74.06 -0.68 2.02 16 28 H 0.08 1.71 7.94 -2.39 -0.02 1.70 16 29 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.03 1.05 7.62 -2.39 -0.02 1.04 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.02 0.92 6.81 -2.39 -0.02 0.90 16 33 H 0.08 2.73 6.07 -2.39 -0.01 2.72 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.92 7.49 -2.39 -0.02 1.90 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.20 299.22 -0.63 -68.83 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.34 Total: 7.98 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.19 Total: -33.64 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -4.16 Total: -78.55 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -2.03 Total: -11.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.20 -0.63 -68.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds