Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.06585 * 2 1 4 4 C 1.53996 * 109.91450 * 121.20825 * 2 1 3 5 5 H 1.09004 * 110.30512 * 239.48701 * 4 2 1 6 6 C 1.52992 * 110.31209 * 1.66102 * 4 2 1 7 7 O 1.42902 * 109.47325 * 185.00331 * 6 4 2 8 8 C 1.54601 * 105.13781 * 120.58004 * 4 2 1 9 9 C 1.54936 * 102.92584 * 21.95250 * 8 4 2 10 10 N 1.47908 * 109.91528 * 238.79361 * 2 1 3 11 11 C 1.46902 * 110.99607 * 94.80127 * 10 2 1 12 12 C 1.53001 * 109.46901 * 169.99595 * 11 10 2 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14 20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14 21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14 22 22 H 1.09003 * 109.47416 * 179.74881 * 1 2 3 23 23 H 1.09004 * 109.47307 * 299.74939 * 1 2 3 24 24 H 1.08996 * 109.47354 * 59.74891 * 1 2 3 25 25 H 1.09007 * 109.47055 * 305.00008 * 6 4 2 26 26 H 1.08992 * 109.47668 * 64.99855 * 6 4 2 27 27 H 0.96694 * 114.00225 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.72308 * 140.31524 * 8 4 2 29 29 H 1.09003 * 110.71910 * 263.41706 * 8 4 2 30 30 H 1.08993 * 110.67111 * 204.15658 * 9 8 4 31 31 H 1.09001 * 110.66365 * 81.01733 * 9 8 4 32 32 H 1.09001 * 109.46712 * 49.99998 * 11 10 2 33 33 H 1.09002 * 109.47411 * 290.00109 * 11 10 2 34 34 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 35 35 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 36 36 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 37 37 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 38 38 H 0.97000 * 119.99684 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0545 -0.7502 1.2383 5 1 2.6714 -0.0896 1.8477 6 6 0.8870 -1.2976 2.0617 7 8 1.3868 -1.8877 3.2634 8 6 2.9059 -1.9118 0.6761 9 6 3.2681 -1.4186 -0.7473 10 7 2.0338 -0.7205 -1.1894 11 6 2.3210 0.2123 -2.2873 12 6 3.0672 -0.5252 -3.4010 13 6 3.3669 0.4464 -4.5442 14 6 4.1014 -0.2801 -5.6414 15 1 4.3309 -1.3299 -5.5342 16 6 4.4802 0.3954 -6.7821 17 7 5.1206 -0.2388 -7.7398 18 14 4.0824 2.2111 -6.9678 19 1 5.1982 3.0212 -6.4167 20 1 3.9000 2.5333 -8.4059 21 1 2.8326 2.5223 -6.2285 22 1 -0.3634 -1.0277 -0.0045 23 1 -0.3634 0.5099 0.8922 24 1 -0.3634 0.5177 -0.8877 25 1 0.2062 -0.4841 2.3123 26 1 0.3546 -2.0510 1.4812 27 1 0.7001 -2.2560 3.8359 28 1 3.8052 -2.0559 1.2749 29 1 2.3222 -2.8313 0.6318 30 1 3.4887 -2.2616 -1.4020 31 1 4.1097 -0.7267 -0.7121 32 1 2.9382 1.0307 -1.9166 33 1 1.3855 0.6114 -2.6792 34 1 2.4500 -1.3437 -3.7716 35 1 4.0027 -0.9243 -3.0091 36 1 2.4316 0.8459 -4.9362 37 1 3.9843 1.2646 -4.1733 38 1 5.3874 0.2366 -8.5421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385722776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -61.393351 kcal Electronic energy + Delta-G solvation = -16077.954341 eV Core-core repulsion = 13533.722919 eV Total energy + Delta-G solvation = -2544.231422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67847 -36.82986 -34.54020 -32.61844 -31.47289 -30.68691 -27.24175 -25.72610 -24.42583 -22.74038 -21.06208 -19.74673 -18.99764 -17.73515 -16.73117 -15.91741 -15.36806 -14.93537 -14.59772 -14.16273 -14.08110 -13.43778 -13.08101 -12.63166 -12.42772 -12.20859 -12.18631 -11.84940 -11.45429 -11.22490 -11.01710 -10.87060 -10.73835 -10.58739 -10.48528 -10.04370 -9.92483 -9.66036 -9.54198 -9.14268 -8.51394 -8.21198 -6.01798 -3.99413 3.31944 3.39212 3.43267 3.96205 4.11819 4.47330 4.55263 4.65544 4.97525 5.17268 5.25964 5.30333 5.32186 5.38510 5.44808 5.55736 5.62605 5.71742 5.78410 5.83697 5.90062 6.07420 6.15152 6.16245 6.22893 6.27769 6.54549 6.63658 6.89621 7.15118 7.29278 7.37265 7.41684 7.48247 7.82822 8.57561 9.03703 9.60949 11.11835 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.004843 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.683040 B = 5779.868880 C = 6074.318413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.053 0.947 4 C -0.095 4.095 5 H 0.078 0.922 6 C 0.084 3.916 7 O -0.577 6.577 8 C -0.111 4.111 9 C 0.034 3.966 10 N -0.512 5.512 11 C 0.046 3.954 12 C -0.101 4.101 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.376 0.624 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.008 0.992 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -0.268 19.932 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 H 0.071 0.929 4 C -0.115 4.115 5 H 0.096 0.904 6 C 0.006 3.994 7 O -0.382 6.382 8 C -0.150 4.150 9 C -0.093 4.093 10 N -0.237 5.237 11 C -0.082 4.082 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.223 0.777 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.063 -0.406 19.279 21.307 hybrid contribution -0.034 1.483 0.167 1.493 sum -9.097 1.077 19.446 21.496 Atomic orbital electron populations 1.21869 0.94372 1.02362 1.01224 1.22351 0.96242 0.96089 0.89605 0.92860 1.21988 0.96520 0.97661 0.95283 0.90353 1.22456 0.95386 0.96270 0.85245 1.86473 1.38363 1.79374 1.33994 1.22499 0.99468 0.97734 0.95251 1.23235 0.91770 0.98868 0.95471 1.64800 1.26773 1.26556 1.05550 1.22492 0.99869 0.93702 0.92149 1.21525 0.98642 0.99198 0.94501 1.19551 0.96400 0.95127 0.94013 1.21149 1.35838 0.98153 1.00478 0.91049 1.25040 0.94643 0.98173 0.95715 1.69920 1.40054 1.36568 1.07869 0.86769 0.79395 0.85940 0.77118 1.20382 1.21395 1.19037 0.91717 0.92604 0.92438 0.93372 0.92920 0.77717 0.91202 0.90857 0.89496 0.93620 0.95271 0.91115 0.91976 0.92770 0.96629 0.97344 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.34 37.16 0.31 -1.18 16 2 C 0.07 0.82 3.08 -66.64 -0.21 0.61 16 3 H 0.05 0.68 7.57 -51.93 -0.39 0.28 16 4 C -0.10 -1.08 3.26 -89.26 -0.29 -1.37 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.08 0.79 5.15 37.15 0.19 0.98 16 7 O -0.58 -5.53 13.55 -35.23 -0.48 -6.01 16 8 C -0.11 -1.35 6.51 -24.87 -0.16 -1.51 16 9 C 0.03 0.48 5.10 -1.90 -0.01 0.47 16 10 N -0.51 -7.64 5.03 -222.57 -1.12 -8.75 16 11 C 0.05 0.77 5.03 -3.82 -0.02 0.75 16 12 C -0.10 -2.06 4.81 -26.73 -0.13 -2.18 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 H 0.06 0.68 6.80 -51.93 -0.35 0.32 16 23 H 0.06 0.48 6.74 -51.93 -0.35 0.13 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.39 6.44 -51.93 -0.33 0.06 16 26 H 0.05 0.49 6.93 -51.93 -0.36 0.13 16 27 H 0.38 1.84 9.12 45.56 0.42 2.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 30 H 0.09 1.28 7.66 -51.93 -0.40 0.88 16 31 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 32 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.05 1.10 6.79 -51.93 -0.35 0.75 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 37 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -32.11 294.62 -7.73 -39.84 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.82 Total: -1.87 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.86 Total: -17.46 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.35 Total: -36.36 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.48 Total: -6.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.11 -7.73 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.555 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds