Wall clock time and date at job start Mon Mar 30 2020 03:24:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08999 * 110.06585 * 2 1
4 4 C 1.53996 * 109.91450 * 121.20825 * 2 1 3
5 5 H 1.09004 * 110.30512 * 239.48701 * 4 2 1
6 6 C 1.52992 * 110.31209 * 1.66102 * 4 2 1
7 7 O 1.42902 * 109.47325 * 185.00331 * 6 4 2
8 8 C 1.54601 * 105.13781 * 120.58004 * 4 2 1
9 9 C 1.54936 * 102.92584 * 21.95250 * 8 4 2
10 10 N 1.47908 * 109.91528 * 238.79361 * 2 1 3
11 11 C 1.46902 * 110.99607 * 94.80127 * 10 2 1
12 12 C 1.53001 * 109.46901 * 169.99595 * 11 10 2
13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10
14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11
15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12
16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12
17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13
18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13
19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14
20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14
21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14
22 22 H 1.09003 * 109.47416 * 179.74881 * 1 2 3
23 23 H 1.09004 * 109.47307 * 299.74939 * 1 2 3
24 24 H 1.08996 * 109.47354 * 59.74891 * 1 2 3
25 25 H 1.09007 * 109.47055 * 305.00008 * 6 4 2
26 26 H 1.08992 * 109.47668 * 64.99855 * 6 4 2
27 27 H 0.96694 * 114.00225 * 179.97438 * 7 6 4
28 28 H 1.09000 * 110.72308 * 140.31524 * 8 4 2
29 29 H 1.09003 * 110.71910 * 263.41706 * 8 4 2
30 30 H 1.08993 * 110.67111 * 204.15658 * 9 8 4
31 31 H 1.09001 * 110.66365 * 81.01733 * 9 8 4
32 32 H 1.09001 * 109.46712 * 49.99998 * 11 10 2
33 33 H 1.09002 * 109.47411 * 290.00109 * 11 10 2
34 34 H 1.09001 * 109.46652 * 60.00371 * 12 11 10
35 35 H 1.08992 * 109.47514 * 300.00460 * 12 11 10
36 36 H 1.09002 * 109.47398 * 300.00496 * 13 12 11
37 37 H 1.09001 * 109.47194 * 60.00677 * 13 12 11
38 38 H 0.97000 * 119.99684 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9040 1.0238 0.0000
4 6 2.0545 -0.7502 1.2383
5 1 2.6714 -0.0896 1.8477
6 6 0.8870 -1.2976 2.0617
7 8 1.3868 -1.8877 3.2634
8 6 2.9059 -1.9118 0.6761
9 6 3.2681 -1.4186 -0.7473
10 7 2.0338 -0.7205 -1.1894
11 6 2.3210 0.2123 -2.2873
12 6 3.0672 -0.5252 -3.4010
13 6 3.3669 0.4464 -4.5442
14 6 4.1014 -0.2801 -5.6414
15 1 4.3309 -1.3299 -5.5342
16 6 4.4802 0.3954 -6.7821
17 7 5.1206 -0.2388 -7.7398
18 14 4.0824 2.2111 -6.9678
19 1 5.1982 3.0212 -6.4167
20 1 3.9000 2.5333 -8.4059
21 1 2.8326 2.5223 -6.2285
22 1 -0.3634 -1.0277 -0.0045
23 1 -0.3634 0.5099 0.8922
24 1 -0.3634 0.5177 -0.8877
25 1 0.2062 -0.4841 2.3123
26 1 0.3546 -2.0510 1.4812
27 1 0.7001 -2.2560 3.8359
28 1 3.8052 -2.0559 1.2749
29 1 2.3222 -2.8313 0.6318
30 1 3.4887 -2.2616 -1.4020
31 1 4.1097 -0.7267 -0.7121
32 1 2.9382 1.0307 -1.9166
33 1 1.3855 0.6114 -2.6792
34 1 2.4500 -1.3437 -3.7716
35 1 4.0027 -0.9243 -3.0091
36 1 2.4316 0.8459 -4.9362
37 1 3.9843 1.2646 -4.1733
38 1 5.3874 0.2366 -8.5421
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385722776.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:42
Heat of formation + Delta-G solvation = -61.393351 kcal
Electronic energy + Delta-G solvation = -16077.954341 eV
Core-core repulsion = 13533.722919 eV
Total energy + Delta-G solvation = -2544.231422 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.67847 -36.82986 -34.54020 -32.61844 -31.47289 -30.68691 -27.24175 -25.72610
-24.42583 -22.74038 -21.06208 -19.74673 -18.99764 -17.73515 -16.73117 -15.91741
-15.36806 -14.93537 -14.59772 -14.16273 -14.08110 -13.43778 -13.08101 -12.63166
-12.42772 -12.20859 -12.18631 -11.84940 -11.45429 -11.22490 -11.01710 -10.87060
-10.73835 -10.58739 -10.48528 -10.04370 -9.92483 -9.66036 -9.54198 -9.14268
-8.51394 -8.21198 -6.01798 -3.99413 3.31944 3.39212 3.43267 3.96205
4.11819 4.47330 4.55263 4.65544 4.97525 5.17268 5.25964 5.30333
5.32186 5.38510 5.44808 5.55736 5.62605 5.71742 5.78410 5.83697
5.90062 6.07420 6.15152 6.16245 6.22893 6.27769 6.54549 6.63658
6.89621 7.15118 7.29278 7.37265 7.41684 7.48247 7.82822 8.57561
9.03703 9.60949 11.11835
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.057166 B = 0.004843 C = 0.004608
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 489.683040 B = 5779.868880 C = 6074.318413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.066 3.934
3 H 0.053 0.947
4 C -0.095 4.095
5 H 0.078 0.922
6 C 0.084 3.916
7 O -0.577 6.577
8 C -0.111 4.111
9 C 0.034 3.966
10 N -0.512 5.512
11 C 0.046 3.954
12 C -0.101 4.101
13 C -0.013 4.013
14 C -0.518 4.518
15 H 0.071 0.929
16 C 0.065 3.935
17 N -0.905 5.905
18 Si 0.880 3.120
19 H -0.278 1.278
20 H -0.288 1.288
21 H -0.266 1.266
22 H 0.064 0.936
23 H 0.055 0.945
24 H 0.057 0.943
25 H 0.048 0.952
26 H 0.053 0.947
27 H 0.376 0.624
28 H 0.069 0.931
29 H 0.073 0.927
30 H 0.087 0.913
31 H 0.045 0.955
32 H 0.029 0.971
33 H 0.070 0.930
34 H 0.061 0.939
35 H 0.054 0.946
36 H 0.015 0.985
37 H 0.008 0.992
38 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.320 -0.268 19.932 22.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.043 4.043
3 H 0.071 0.929
4 C -0.115 4.115
5 H 0.096 0.904
6 C 0.006 3.994
7 O -0.382 6.382
8 C -0.150 4.150
9 C -0.093 4.093
10 N -0.237 5.237
11 C -0.082 4.082
12 C -0.139 4.139
13 C -0.051 4.051
14 C -0.556 4.556
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.544 5.544
18 Si 0.708 3.292
19 H -0.204 1.204
20 H -0.214 1.214
21 H -0.190 1.190
22 H 0.083 0.917
23 H 0.074 0.926
24 H 0.076 0.924
25 H 0.066 0.934
26 H 0.071 0.929
27 H 0.223 0.777
28 H 0.088 0.912
29 H 0.091 0.909
30 H 0.105 0.895
31 H 0.064 0.936
32 H 0.047 0.953
33 H 0.089 0.911
34 H 0.080 0.920
35 H 0.072 0.928
36 H 0.034 0.966
37 H 0.027 0.973
38 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -9.063 -0.406 19.279 21.307
hybrid contribution -0.034 1.483 0.167 1.493
sum -9.097 1.077 19.446 21.496
Atomic orbital electron populations
1.21869 0.94372 1.02362 1.01224 1.22351 0.96242 0.96089 0.89605
0.92860 1.21988 0.96520 0.97661 0.95283 0.90353 1.22456 0.95386
0.96270 0.85245 1.86473 1.38363 1.79374 1.33994 1.22499 0.99468
0.97734 0.95251 1.23235 0.91770 0.98868 0.95471 1.64800 1.26773
1.26556 1.05550 1.22492 0.99869 0.93702 0.92149 1.21525 0.98642
0.99198 0.94501 1.19551 0.96400 0.95127 0.94013 1.21149 1.35838
0.98153 1.00478 0.91049 1.25040 0.94643 0.98173 0.95715 1.69920
1.40054 1.36568 1.07869 0.86769 0.79395 0.85940 0.77118 1.20382
1.21395 1.19037 0.91717 0.92604 0.92438 0.93372 0.92920 0.77717
0.91202 0.90857 0.89496 0.93620 0.95271 0.91115 0.91976 0.92770
0.96629 0.97344 0.92787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.49 8.34 37.16 0.31 -1.18 16
2 C 0.07 0.82 3.08 -66.64 -0.21 0.61 16
3 H 0.05 0.68 7.57 -51.93 -0.39 0.28 16
4 C -0.10 -1.08 3.26 -89.26 -0.29 -1.37 16
5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
6 C 0.08 0.79 5.15 37.15 0.19 0.98 16
7 O -0.58 -5.53 13.55 -35.23 -0.48 -6.01 16
8 C -0.11 -1.35 6.51 -24.87 -0.16 -1.51 16
9 C 0.03 0.48 5.10 -1.90 -0.01 0.47 16
10 N -0.51 -7.64 5.03 -222.57 -1.12 -8.75 16
11 C 0.05 0.77 5.03 -3.82 -0.02 0.75 16
12 C -0.10 -2.06 4.81 -26.73 -0.13 -2.18 16
13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16
14 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16
15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16
16 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16
17 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16
18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16
19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16
21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16
22 H 0.06 0.68 6.80 -51.93 -0.35 0.32 16
23 H 0.06 0.48 6.74 -51.93 -0.35 0.13 16
24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.05 0.39 6.44 -51.93 -0.33 0.06 16
26 H 0.05 0.49 6.93 -51.93 -0.36 0.13 16
27 H 0.38 1.84 9.12 45.56 0.42 2.26 16
28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16
30 H 0.09 1.28 7.66 -51.93 -0.40 0.88 16
31 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16
32 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16
33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
35 H 0.05 1.10 6.79 -51.93 -0.35 0.75 16
36 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16
37 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16
38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
LS Contribution 294.62 15.07 4.44 4.44
Total: -1.00 -32.11 294.62 -7.73 -39.84
By element:
Atomic # 1 Polarization: 3.94 SS G_CDS: -5.82 Total: -1.87 kcal
Atomic # 6 Polarization: -16.60 SS G_CDS: -0.86 Total: -17.46 kcal
Atomic # 7 Polarization: -36.02 SS G_CDS: -0.35 Total: -36.36 kcal
Atomic # 8 Polarization: -5.53 SS G_CDS: -0.48 Total: -6.01 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -32.11 -7.73 -39.84 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385722776.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.555 kcal
(2) G-P(sol) polarization free energy of solvation -32.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds