Wall clock time and date at job start Mon Mar 30 2020 03:24:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08999 * 110.06585 * 2 1
4 4 C 1.53996 * 109.91450 * 121.20825 * 2 1 3
5 5 H 1.09004 * 110.30512 * 239.48701 * 4 2 1
6 6 C 1.52992 * 110.31209 * 1.66102 * 4 2 1
7 7 O 1.42902 * 109.47325 * 185.00331 * 6 4 2
8 8 C 1.54601 * 105.13781 * 120.58004 * 4 2 1
9 9 C 1.54936 * 102.92584 * 21.95250 * 8 4 2
10 10 N 1.47908 * 109.91528 * 238.79361 * 2 1 3
11 11 C 1.46902 * 110.99607 * 94.80127 * 10 2 1
12 12 C 1.53001 * 109.46901 * 169.99595 * 11 10 2
13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10
14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11
15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12
16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12
17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13
18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13
19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14
20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14
21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14
22 22 H 1.09003 * 109.47416 * 179.74881 * 1 2 3
23 23 H 1.09004 * 109.47307 * 299.74939 * 1 2 3
24 24 H 1.08996 * 109.47354 * 59.74891 * 1 2 3
25 25 H 1.09007 * 109.47055 * 305.00008 * 6 4 2
26 26 H 1.08992 * 109.47668 * 64.99855 * 6 4 2
27 27 H 0.96694 * 114.00225 * 179.97438 * 7 6 4
28 28 H 1.09000 * 110.72308 * 140.31524 * 8 4 2
29 29 H 1.09003 * 110.71910 * 263.41706 * 8 4 2
30 30 H 1.08993 * 110.67111 * 204.15658 * 9 8 4
31 31 H 1.09001 * 110.66365 * 81.01733 * 9 8 4
32 32 H 1.09001 * 109.46712 * 49.99998 * 11 10 2
33 33 H 1.09002 * 109.47411 * 290.00109 * 11 10 2
34 34 H 1.09001 * 109.46652 * 60.00371 * 12 11 10
35 35 H 1.08992 * 109.47514 * 300.00460 * 12 11 10
36 36 H 1.09002 * 109.47398 * 300.00496 * 13 12 11
37 37 H 1.09001 * 109.47194 * 60.00677 * 13 12 11
38 38 H 0.97000 * 119.99684 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9040 1.0238 0.0000
4 6 2.0545 -0.7502 1.2383
5 1 2.6714 -0.0896 1.8477
6 6 0.8870 -1.2976 2.0617
7 8 1.3868 -1.8877 3.2634
8 6 2.9059 -1.9118 0.6761
9 6 3.2681 -1.4186 -0.7473
10 7 2.0338 -0.7205 -1.1894
11 6 2.3210 0.2123 -2.2873
12 6 3.0672 -0.5252 -3.4010
13 6 3.3669 0.4464 -4.5442
14 6 4.1014 -0.2801 -5.6414
15 1 4.3309 -1.3299 -5.5342
16 6 4.4802 0.3954 -6.7821
17 7 5.1206 -0.2388 -7.7398
18 14 4.0824 2.2111 -6.9678
19 1 5.1982 3.0212 -6.4167
20 1 3.9000 2.5333 -8.4059
21 1 2.8326 2.5223 -6.2285
22 1 -0.3634 -1.0277 -0.0045
23 1 -0.3634 0.5099 0.8922
24 1 -0.3634 0.5177 -0.8877
25 1 0.2062 -0.4841 2.3123
26 1 0.3546 -2.0510 1.4812
27 1 0.7001 -2.2560 3.8359
28 1 3.8052 -2.0559 1.2749
29 1 2.3222 -2.8313 0.6318
30 1 3.4887 -2.2616 -1.4020
31 1 4.1097 -0.7267 -0.7121
32 1 2.9382 1.0307 -1.9166
33 1 1.3855 0.6114 -2.6792
34 1 2.4500 -1.3437 -3.7716
35 1 4.0027 -0.9243 -3.0091
36 1 2.4316 0.8459 -4.9362
37 1 3.9843 1.2646 -4.1733
38 1 5.3874 0.2366 -8.5421
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385722776.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:41
Heat of formation + Delta-G solvation = -85.531272 kcal
Electronic energy + Delta-G solvation = -16079.001040 eV
Core-core repulsion = 13533.722919 eV
Total energy + Delta-G solvation = -2545.278121 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.69734 -37.68242 -36.13321 -34.45158 -32.56799 -32.18007 -28.72289 -26.95976
-25.37389 -24.25561 -22.56221 -21.23225 -19.96310 -18.94464 -18.41469 -16.99563
-16.55194 -16.26960 -16.00743 -15.57135 -15.22748 -14.79646 -14.48698 -14.12132
-13.72477 -13.43798 -13.29869 -13.24732 -12.80449 -12.62646 -12.35496 -12.14629
-11.95232 -11.82200 -11.74523 -11.54055 -11.44177 -11.24326 -11.21207 -10.77449
-10.71123 -9.38303 -8.30423 -6.34989 1.34919 1.37266 1.49608 2.35675
2.98266 3.04746 3.25501 3.64860 3.72115 4.11370 4.18558 4.23833
4.28613 4.39211 4.48670 4.51042 4.63091 4.65126 4.74729 4.79236
4.82364 4.91213 4.91370 5.00523 5.07938 5.15484 5.18085 5.29234
5.41410 5.49427 5.57409 5.64769 5.99481 6.12711 6.29002 6.73006
6.96754 7.29662 8.86704
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.057166 B = 0.004843 C = 0.004608
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 489.683040 B = 5779.868880 C = 6074.318413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.063 3.937
3 H 0.053 0.947
4 C -0.094 4.094
5 H 0.077 0.923
6 C 0.088 3.912
7 O -0.595 6.595
8 C -0.105 4.105
9 C 0.030 3.970
10 N -0.521 5.521
11 C 0.057 3.943
12 C -0.091 4.091
13 C -0.009 4.009
14 C -0.534 4.534
15 H 0.028 0.972
16 C 0.002 3.998
17 N -0.953 5.953
18 Si 0.954 3.046
19 H -0.266 1.266
20 H -0.282 1.282
21 H -0.245 1.245
22 H 0.065 0.935
23 H 0.080 0.920
24 H 0.049 0.951
25 H 0.067 0.933
26 H 0.054 0.946
27 H 0.397 0.603
28 H 0.074 0.926
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.039 0.961
32 H 0.033 0.967
33 H 0.077 0.923
34 H 0.048 0.952
35 H 0.046 0.954
36 H 0.021 0.979
37 H 0.017 0.983
38 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.859 1.486 21.777 24.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.045 4.045
3 H 0.071 0.929
4 C -0.113 4.113
5 H 0.096 0.904
6 C 0.011 3.989
7 O -0.403 6.403
8 C -0.143 4.143
9 C -0.097 4.097
10 N -0.245 5.245
11 C -0.071 4.071
12 C -0.129 4.129
13 C -0.047 4.047
14 C -0.572 4.572
15 H 0.047 0.953
16 C -0.194 4.194
17 N -0.594 5.594
18 Si 0.777 3.223
19 H -0.191 1.191
20 H -0.208 1.208
21 H -0.169 1.169
22 H 0.084 0.916
23 H 0.099 0.901
24 H 0.068 0.932
25 H 0.085 0.915
26 H 0.072 0.928
27 H 0.246 0.754
28 H 0.093 0.907
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.057 0.943
32 H 0.052 0.948
33 H 0.095 0.905
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.040 0.960
37 H 0.035 0.965
38 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -10.623 1.330 21.160 23.714
hybrid contribution 0.490 0.809 -0.390 1.023
sum -10.133 2.139 20.770 23.209
Atomic orbital electron populations
1.21862 0.92754 1.02696 1.02099 1.22452 0.97469 0.95808 0.88765
0.92939 1.21974 0.97170 0.97083 0.95107 0.90431 1.22379 0.94482
0.96896 0.85132 1.86417 1.39973 1.79634 1.34315 1.22443 0.99937
0.98116 0.93807 1.23232 0.91532 0.98294 0.96684 1.64795 1.26876
1.26509 1.06339 1.22254 0.99559 0.93520 0.91736 1.21336 0.98668
0.98270 0.94614 1.19489 0.95900 0.95595 0.93723 1.21500 1.36495
0.96808 1.02442 0.95344 1.26073 0.94289 1.03968 0.95120 1.70079
1.41498 1.39044 1.08736 0.85598 0.80237 0.78863 0.77583 1.19116
1.20819 1.16861 0.91635 0.90109 0.93212 0.91524 0.92758 0.75369
0.90710 0.90819 0.90929 0.94292 0.94832 0.90502 0.93332 0.93502
0.96019 0.96461 0.92458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.49 8.34 71.98 0.60 -1.89 16
2 C 0.06 1.43 3.08 45.06 0.14 1.57 16
3 H 0.05 1.21 7.57 -2.39 -0.02 1.19 16
4 C -0.09 -1.93 3.26 -9.92 -0.03 -1.96 16
5 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16
6 C 0.09 1.41 5.15 71.98 0.37 1.78 16
7 O -0.59 -9.79 13.55 -148.98 -2.02 -11.81 16
8 C -0.10 -2.41 6.51 31.80 0.21 -2.20 16
9 C 0.03 0.85 5.10 86.65 0.44 1.29 16
10 N -0.52 -14.92 5.03 -858.07 -4.31 -19.23 16
11 C 0.06 1.87 5.03 86.30 0.43 2.30 16
12 C -0.09 -3.72 4.81 30.59 0.15 -3.58 16
13 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16
14 C -0.53 -31.93 9.66 25.60 0.25 -31.68 16
15 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16
16 C 0.00 0.12 5.47 84.65 0.46 0.58 16
17 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16
18 Si 0.95 45.00 27.47 68.60 1.88 46.88 16
19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
21 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16
22 H 0.06 1.19 6.80 -2.39 -0.02 1.18 16
23 H 0.08 1.07 6.74 -2.39 -0.02 1.06 16
24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
25 H 0.07 0.82 6.44 -2.38 -0.02 0.81 16
26 H 0.05 0.85 6.93 -2.39 -0.02 0.84 16
27 H 0.40 2.76 9.12 -74.06 -0.68 2.08 16
28 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16
29 H 0.07 1.68 7.76 -2.39 -0.02 1.66 16
30 H 0.07 2.20 7.66 -2.39 -0.02 2.18 16
31 H 0.04 1.13 8.00 -2.39 -0.02 1.11 16
32 H 0.03 1.07 7.81 -2.39 -0.02 1.05 16
33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
35 H 0.05 1.95 6.79 -2.39 -0.02 1.94 16
36 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16
37 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16
38 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16
Total: -1.00 -69.56 294.62 -0.72 -70.28
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: 0.29 Total: 8.85 kcal
Atomic # 6 Polarization: -37.26 SS G_CDS: 3.14 Total: -34.12 kcal
Atomic # 7 Polarization: -76.07 SS G_CDS: -4.01 Total: -80.09 kcal
Atomic # 8 Polarization: -9.79 SS G_CDS: -2.02 Total: -11.81 kcal
Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal
Total: -69.56 -0.72 -70.28 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385722776.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.249 kcal
(2) G-P(sol) polarization free energy of solvation -69.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds