Wall clock time and date at job start Mon Mar 30 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.06585 * 2 1 4 4 C 1.53996 * 109.91450 * 121.20825 * 2 1 3 5 5 H 1.09004 * 110.30512 * 239.48701 * 4 2 1 6 6 C 1.52992 * 110.31209 * 1.66102 * 4 2 1 7 7 O 1.42902 * 109.47325 * 185.00331 * 6 4 2 8 8 C 1.54601 * 105.13781 * 120.58004 * 4 2 1 9 9 C 1.54936 * 102.92584 * 21.95250 * 8 4 2 10 10 N 1.47908 * 109.91528 * 238.79361 * 2 1 3 11 11 C 1.46902 * 110.99607 * 94.80127 * 10 2 1 12 12 C 1.53001 * 109.46901 * 169.99595 * 11 10 2 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14 20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14 21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14 22 22 H 1.09003 * 109.47416 * 179.74881 * 1 2 3 23 23 H 1.09004 * 109.47307 * 299.74939 * 1 2 3 24 24 H 1.08996 * 109.47354 * 59.74891 * 1 2 3 25 25 H 1.09007 * 109.47055 * 305.00008 * 6 4 2 26 26 H 1.08992 * 109.47668 * 64.99855 * 6 4 2 27 27 H 0.96694 * 114.00225 * 179.97438 * 7 6 4 28 28 H 1.09000 * 110.72308 * 140.31524 * 8 4 2 29 29 H 1.09003 * 110.71910 * 263.41706 * 8 4 2 30 30 H 1.08993 * 110.67111 * 204.15658 * 9 8 4 31 31 H 1.09001 * 110.66365 * 81.01733 * 9 8 4 32 32 H 1.09001 * 109.46712 * 49.99998 * 11 10 2 33 33 H 1.09002 * 109.47411 * 290.00109 * 11 10 2 34 34 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 35 35 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 36 36 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 37 37 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 38 38 H 0.97000 * 119.99684 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0545 -0.7502 1.2383 5 1 2.6714 -0.0896 1.8477 6 6 0.8870 -1.2976 2.0617 7 8 1.3868 -1.8877 3.2634 8 6 2.9059 -1.9118 0.6761 9 6 3.2681 -1.4186 -0.7473 10 7 2.0338 -0.7205 -1.1894 11 6 2.3210 0.2123 -2.2873 12 6 3.0672 -0.5252 -3.4010 13 6 3.3669 0.4464 -4.5442 14 6 4.1014 -0.2801 -5.6414 15 1 4.3309 -1.3299 -5.5342 16 6 4.4802 0.3954 -6.7821 17 7 5.1206 -0.2388 -7.7398 18 14 4.0824 2.2111 -6.9678 19 1 5.1982 3.0212 -6.4167 20 1 3.9000 2.5333 -8.4059 21 1 2.8326 2.5223 -6.2285 22 1 -0.3634 -1.0277 -0.0045 23 1 -0.3634 0.5099 0.8922 24 1 -0.3634 0.5177 -0.8877 25 1 0.2062 -0.4841 2.3123 26 1 0.3546 -2.0510 1.4812 27 1 0.7001 -2.2560 3.8359 28 1 3.8052 -2.0559 1.2749 29 1 2.3222 -2.8313 0.6318 30 1 3.4887 -2.2616 -1.4020 31 1 4.1097 -0.7267 -0.7121 32 1 2.9382 1.0307 -1.9166 33 1 1.3855 0.6114 -2.6792 34 1 2.4500 -1.3437 -3.7716 35 1 4.0027 -0.9243 -3.0091 36 1 2.4316 0.8459 -4.9362 37 1 3.9843 1.2646 -4.1733 38 1 5.3874 0.2366 -8.5421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385722776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:41 Heat of formation + Delta-G solvation = -85.531272 kcal Electronic energy + Delta-G solvation = -16079.001040 eV Core-core repulsion = 13533.722919 eV Total energy + Delta-G solvation = -2545.278121 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69734 -37.68242 -36.13321 -34.45158 -32.56799 -32.18007 -28.72289 -26.95976 -25.37389 -24.25561 -22.56221 -21.23225 -19.96310 -18.94464 -18.41469 -16.99563 -16.55194 -16.26960 -16.00743 -15.57135 -15.22748 -14.79646 -14.48698 -14.12132 -13.72477 -13.43798 -13.29869 -13.24732 -12.80449 -12.62646 -12.35496 -12.14629 -11.95232 -11.82200 -11.74523 -11.54055 -11.44177 -11.24326 -11.21207 -10.77449 -10.71123 -9.38303 -8.30423 -6.34989 1.34919 1.37266 1.49608 2.35675 2.98266 3.04746 3.25501 3.64860 3.72115 4.11370 4.18558 4.23833 4.28613 4.39211 4.48670 4.51042 4.63091 4.65126 4.74729 4.79236 4.82364 4.91213 4.91370 5.00523 5.07938 5.15484 5.18085 5.29234 5.41410 5.49427 5.57409 5.64769 5.99481 6.12711 6.29002 6.73006 6.96754 7.29662 8.86704 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.004843 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.683040 B = 5779.868880 C = 6074.318413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.063 3.937 3 H 0.053 0.947 4 C -0.094 4.094 5 H 0.077 0.923 6 C 0.088 3.912 7 O -0.595 6.595 8 C -0.105 4.105 9 C 0.030 3.970 10 N -0.521 5.521 11 C 0.057 3.943 12 C -0.091 4.091 13 C -0.009 4.009 14 C -0.534 4.534 15 H 0.028 0.972 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.245 1.245 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.397 0.603 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 1.486 21.777 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.045 4.045 3 H 0.071 0.929 4 C -0.113 4.113 5 H 0.096 0.904 6 C 0.011 3.989 7 O -0.403 6.403 8 C -0.143 4.143 9 C -0.097 4.097 10 N -0.245 5.245 11 C -0.071 4.071 12 C -0.129 4.129 13 C -0.047 4.047 14 C -0.572 4.572 15 H 0.047 0.953 16 C -0.194 4.194 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.169 1.169 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.623 1.330 21.160 23.714 hybrid contribution 0.490 0.809 -0.390 1.023 sum -10.133 2.139 20.770 23.209 Atomic orbital electron populations 1.21862 0.92754 1.02696 1.02099 1.22452 0.97469 0.95808 0.88765 0.92939 1.21974 0.97170 0.97083 0.95107 0.90431 1.22379 0.94482 0.96896 0.85132 1.86417 1.39973 1.79634 1.34315 1.22443 0.99937 0.98116 0.93807 1.23232 0.91532 0.98294 0.96684 1.64795 1.26876 1.26509 1.06339 1.22254 0.99559 0.93520 0.91736 1.21336 0.98668 0.98270 0.94614 1.19489 0.95900 0.95595 0.93723 1.21500 1.36495 0.96808 1.02442 0.95344 1.26073 0.94289 1.03968 0.95120 1.70079 1.41498 1.39044 1.08736 0.85598 0.80237 0.78863 0.77583 1.19116 1.20819 1.16861 0.91635 0.90109 0.93212 0.91524 0.92758 0.75369 0.90710 0.90819 0.90929 0.94292 0.94832 0.90502 0.93332 0.93502 0.96019 0.96461 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.34 71.98 0.60 -1.89 16 2 C 0.06 1.43 3.08 45.06 0.14 1.57 16 3 H 0.05 1.21 7.57 -2.39 -0.02 1.19 16 4 C -0.09 -1.93 3.26 -9.92 -0.03 -1.96 16 5 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 6 C 0.09 1.41 5.15 71.98 0.37 1.78 16 7 O -0.59 -9.79 13.55 -148.98 -2.02 -11.81 16 8 C -0.10 -2.41 6.51 31.80 0.21 -2.20 16 9 C 0.03 0.85 5.10 86.65 0.44 1.29 16 10 N -0.52 -14.92 5.03 -858.07 -4.31 -19.23 16 11 C 0.06 1.87 5.03 86.30 0.43 2.30 16 12 C -0.09 -3.72 4.81 30.59 0.15 -3.58 16 13 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 14 C -0.53 -31.93 9.66 25.60 0.25 -31.68 16 15 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 16 C 0.00 0.12 5.47 84.65 0.46 0.58 16 17 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 18 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 22 H 0.06 1.19 6.80 -2.39 -0.02 1.18 16 23 H 0.08 1.07 6.74 -2.39 -0.02 1.06 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.82 6.44 -2.38 -0.02 0.81 16 26 H 0.05 0.85 6.93 -2.39 -0.02 0.84 16 27 H 0.40 2.76 9.12 -74.06 -0.68 2.08 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.68 7.76 -2.39 -0.02 1.66 16 30 H 0.07 2.20 7.66 -2.39 -0.02 2.18 16 31 H 0.04 1.13 8.00 -2.39 -0.02 1.11 16 32 H 0.03 1.07 7.81 -2.39 -0.02 1.05 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.95 6.79 -2.39 -0.02 1.94 16 36 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 37 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -69.56 294.62 -0.72 -70.28 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.29 Total: 8.85 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.14 Total: -34.12 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -4.01 Total: -80.09 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -2.02 Total: -11.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -69.56 -0.72 -70.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385722776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.249 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds