Wall clock time and date at job start Mon Mar 30 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50433 * 2 1 4 4 C 1.53094 * 109.54390 * 120.10841 * 2 1 3 5 5 N 1.47016 * 109.26026 * 176.80667 * 4 2 1 6 6 C 1.46901 * 110.99991 * 177.60948 * 5 4 2 7 7 C 1.53000 * 109.46769 * 189.68155 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08009 * 120.00339 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00310 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99776 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00473 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47163 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47233 * 120.00015 * 14 12 10 17 17 H 1.48504 * 109.47158 * 239.99855 * 14 12 10 18 18 C 1.47013 * 110.74818 * 301.38145 * 5 4 2 19 19 C 1.53099 * 109.25699 * 58.61769 * 18 5 4 20 20 O 1.43008 * 109.25820 * 303.14724 * 19 18 5 21 21 H 1.09005 * 109.47321 * 180.08538 * 1 2 3 22 22 H 1.09005 * 109.47351 * 300.08676 * 1 2 3 23 23 H 1.09003 * 109.47313 * 60.08472 * 1 2 3 24 24 H 1.09004 * 109.50608 * 56.86607 * 4 2 1 25 25 H 1.09000 * 109.50667 * 296.74071 * 4 2 1 26 26 H 1.09002 * 109.47401 * 69.67863 * 6 5 4 27 27 H 1.09001 * 109.46874 * 309.67875 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 1.08992 * 109.47098 * 299.99158 * 9 8 7 33 33 H 1.09001 * 109.47583 * 60.00267 * 9 8 7 34 34 H 0.96998 * 120.00187 * 179.97438 * 13 12 10 35 35 H 1.09004 * 109.50487 * 178.54754 * 18 5 4 36 36 H 1.08997 * 109.51351 * 298.67954 * 18 5 4 37 37 H 1.09005 * 109.50562 * 63.08705 * 19 18 5 38 38 H 1.09002 * 109.50710 * 183.21261 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7237 1.2481 5 7 3.5102 -0.7873 1.2036 6 6 4.0464 -1.4256 2.4132 7 6 5.5670 -1.2593 2.4462 8 6 6.1255 -1.9247 3.7057 9 6 7.6460 -1.7579 3.7390 10 6 8.1961 -2.4127 4.9799 11 1 7.5280 -2.8995 5.6751 12 6 9.5522 -2.3912 5.2274 13 7 10.3660 -1.7997 4.3802 14 14 10.2342 -3.2034 6.7651 15 1 9.1198 -3.7959 7.5476 16 1 11.1897 -4.2723 6.3781 17 1 10.9353 -2.1883 7.5917 18 6 3.9648 -1.4869 -0.0068 19 6 3.4334 -0.7555 -1.2424 20 8 2.0075 -0.6758 -1.1664 21 1 -0.3634 -1.0277 0.0015 22 1 -0.3634 0.5152 0.8892 23 1 -0.3634 0.5125 -0.8908 24 1 1.6346 -1.7344 1.2757 25 1 1.7282 -0.1796 2.1389 26 1 3.7969 -2.4867 2.4052 27 1 3.6103 -0.9565 3.2952 28 1 6.0030 -1.7284 1.5642 29 1 5.8164 -0.1984 2.4542 30 1 5.6896 -1.4560 4.5880 31 1 5.8760 -2.9857 3.6973 32 1 8.0823 -2.2263 2.8569 33 1 7.8951 -0.6967 3.7478 34 1 11.3200 -1.7842 4.5544 35 1 5.0545 -1.4998 -0.0322 36 1 3.5882 -2.5097 0.0006 37 1 3.8528 0.2500 -1.2785 38 1 3.7200 -1.3025 -2.1405 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385816286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:52 Heat of formation + Delta-G solvation = -67.425821 kcal Electronic energy + Delta-G solvation = -15767.041890 eV Core-core repulsion = 13222.548880 eV Total energy + Delta-G solvation = -2544.493010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.75526 -36.47028 -34.16264 -32.96330 -32.13998 -29.29843 -28.15237 -25.73427 -24.01918 -23.06287 -21.05303 -20.37009 -19.98100 -16.52534 -16.27162 -16.19614 -15.44541 -15.16751 -14.80033 -14.46820 -14.12629 -13.83103 -12.83119 -12.67426 -12.50690 -12.35546 -12.00063 -11.89925 -11.59687 -11.29434 -11.27673 -10.96517 -10.69388 -10.49021 -10.43496 -10.33419 -9.73829 -9.60342 -9.23524 -8.98300 -8.36596 -8.32307 -5.97508 -3.99673 3.32016 3.39303 3.43613 3.59686 3.81317 4.47960 4.65114 4.86527 4.93536 4.99754 5.12177 5.27111 5.35046 5.38164 5.39902 5.46760 5.52746 5.60413 5.72954 5.78197 5.88088 5.89226 5.94421 6.13704 6.23089 6.50787 6.80031 6.95218 6.97742 7.02881 7.10002 7.22641 7.71628 7.87157 8.03580 8.46469 9.08020 9.64247 11.13884 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.069233 B = 0.003963 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.332756 B = 7063.792910 C = 7322.908203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.066 0.934 4 C 0.023 3.977 5 N -0.538 5.538 6 C 0.056 3.944 7 C -0.113 4.113 8 C -0.109 4.109 9 C 0.021 3.979 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.014 3.986 19 C 0.065 3.935 20 O -0.387 6.387 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 2.927 -9.270 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.084 0.916 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.151 4.151 8 C -0.147 4.147 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.114 4.114 19 C -0.012 4.012 20 O -0.306 6.306 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.049 3.366 -9.451 19.782 hybrid contribution 0.465 -1.212 1.126 1.718 sum -16.585 2.154 -8.325 18.681 Atomic orbital electron populations 1.21748 0.93007 1.02849 1.02555 1.22151 0.94596 0.95710 0.84496 0.91581 1.22805 0.88601 0.99987 0.99152 1.62264 1.07971 1.53297 1.02794 1.22265 0.97168 0.96386 0.91258 1.21671 0.92104 1.01740 0.99613 1.21602 0.99702 0.98575 0.94866 1.19092 0.88575 0.97100 0.96842 1.21330 0.92157 1.35232 1.07057 0.92726 1.25039 0.97254 0.95604 0.96680 1.69980 1.03393 1.44074 1.36112 0.86554 0.79003 0.79209 0.83342 1.19771 1.21042 1.21010 1.22849 1.02019 0.96008 0.90571 1.22662 0.80657 1.00473 0.97393 1.87949 1.21378 1.78482 1.42787 0.91965 0.90941 0.91664 0.94221 0.89811 0.95022 0.90875 0.92604 0.91642 0.93441 0.93691 0.96740 0.96591 0.93106 0.88833 0.94159 0.92253 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.57 37.16 0.36 -0.84 16 2 C 0.09 0.95 3.42 -26.68 -0.09 0.86 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.02 0.27 4.93 -3.71 -0.02 0.25 16 5 N -0.54 -7.29 4.73 -234.30 -1.11 -8.40 16 6 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 7 C -0.11 -1.97 5.14 -26.73 -0.14 -2.11 16 8 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 11 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 19 C 0.07 0.73 7.01 37.21 0.26 0.99 16 20 O -0.39 -4.80 10.47 -35.23 -0.37 -5.17 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 28 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.09 1.20 6.37 -51.93 -0.33 0.87 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -31.04 303.54 -8.51 -39.55 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -6.97 Total: -5.13 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.36 Total: -15.71 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.37 Total: -35.02 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.37 Total: -5.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.04 -8.51 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385816286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.875 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds