Wall clock time and date at job start Mon Mar 30 2020 03:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.50433 * 2 1 4 4 C 1.53094 * 109.54390 * 120.10841 * 2 1 3 5 5 N 1.47016 * 109.26026 * 176.80667 * 4 2 1 6 6 C 1.46901 * 110.99991 * 177.60948 * 5 4 2 7 7 C 1.53000 * 109.46769 * 189.68155 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08009 * 120.00339 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00310 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99776 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00473 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47163 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47233 * 120.00015 * 14 12 10 17 17 H 1.48504 * 109.47158 * 239.99855 * 14 12 10 18 18 C 1.47013 * 110.74818 * 301.38145 * 5 4 2 19 19 C 1.53099 * 109.25699 * 58.61769 * 18 5 4 20 20 O 1.43008 * 109.25820 * 303.14724 * 19 18 5 21 21 H 1.09005 * 109.47321 * 180.08538 * 1 2 3 22 22 H 1.09005 * 109.47351 * 300.08676 * 1 2 3 23 23 H 1.09003 * 109.47313 * 60.08472 * 1 2 3 24 24 H 1.09004 * 109.50608 * 56.86607 * 4 2 1 25 25 H 1.09000 * 109.50667 * 296.74071 * 4 2 1 26 26 H 1.09002 * 109.47401 * 69.67863 * 6 5 4 27 27 H 1.09001 * 109.46874 * 309.67875 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 1.08992 * 109.47098 * 299.99158 * 9 8 7 33 33 H 1.09001 * 109.47583 * 60.00267 * 9 8 7 34 34 H 0.96998 * 120.00187 * 179.97438 * 13 12 10 35 35 H 1.09004 * 109.50487 * 178.54754 * 18 5 4 36 36 H 1.08997 * 109.51351 * 298.67954 * 18 5 4 37 37 H 1.09005 * 109.50562 * 63.08705 * 19 18 5 38 38 H 1.09002 * 109.50710 * 183.21261 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7237 1.2481 5 7 3.5102 -0.7873 1.2036 6 6 4.0464 -1.4256 2.4132 7 6 5.5670 -1.2593 2.4462 8 6 6.1255 -1.9247 3.7057 9 6 7.6460 -1.7579 3.7390 10 6 8.1961 -2.4127 4.9799 11 1 7.5280 -2.8995 5.6751 12 6 9.5522 -2.3912 5.2274 13 7 10.3660 -1.7997 4.3802 14 14 10.2342 -3.2034 6.7651 15 1 9.1198 -3.7959 7.5476 16 1 11.1897 -4.2723 6.3781 17 1 10.9353 -2.1883 7.5917 18 6 3.9648 -1.4869 -0.0068 19 6 3.4334 -0.7555 -1.2424 20 8 2.0075 -0.6758 -1.1664 21 1 -0.3634 -1.0277 0.0015 22 1 -0.3634 0.5152 0.8892 23 1 -0.3634 0.5125 -0.8908 24 1 1.6346 -1.7344 1.2757 25 1 1.7282 -0.1796 2.1389 26 1 3.7969 -2.4867 2.4052 27 1 3.6103 -0.9565 3.2952 28 1 6.0030 -1.7284 1.5642 29 1 5.8164 -0.1984 2.4542 30 1 5.6896 -1.4560 4.5880 31 1 5.8760 -2.9857 3.6973 32 1 8.0823 -2.2263 2.8569 33 1 7.8951 -0.6967 3.7478 34 1 11.3200 -1.7842 4.5544 35 1 5.0545 -1.4998 -0.0322 36 1 3.5882 -2.5097 0.0006 37 1 3.8528 0.2500 -1.2785 38 1 3.7200 -1.3025 -2.1405 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385816286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:50 Heat of formation + Delta-G solvation = -87.517516 kcal Electronic energy + Delta-G solvation = -15767.913131 eV Core-core repulsion = 13222.548880 eV Total energy + Delta-G solvation = -2545.364251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70073 -37.67109 -35.91721 -34.14086 -33.69815 -30.78022 -29.30278 -27.17865 -25.38529 -24.25562 -22.48268 -21.59956 -21.34394 -18.44007 -17.40277 -17.25926 -16.61780 -16.50467 -16.17776 -15.76520 -15.43298 -14.95695 -14.51161 -13.93910 -13.63512 -13.53788 -13.38319 -13.10566 -12.89219 -12.81196 -12.53870 -12.29081 -12.23055 -12.12297 -11.90440 -11.54678 -11.35611 -11.25886 -11.05448 -10.57048 -10.54995 -9.41390 -8.20537 -6.32025 1.39449 1.39781 1.53361 2.40390 2.70026 2.86519 3.12258 3.77503 3.92372 3.97759 4.10843 4.15307 4.24636 4.28295 4.49279 4.49683 4.58768 4.60730 4.70092 4.73366 4.79494 4.85511 4.89016 4.99756 5.09010 5.19384 5.24677 5.28876 5.33615 5.54028 5.76204 5.85911 5.95049 5.99427 6.21571 6.25315 6.85648 7.37420 8.91560 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.069233 B = 0.003963 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.332756 B = 7063.792910 C = 7322.908203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.085 3.915 3 H 0.065 0.935 4 C 0.023 3.977 5 N -0.549 5.549 6 C 0.066 3.934 7 C -0.102 4.102 8 C -0.097 4.097 9 C 0.023 3.977 10 C -0.544 4.544 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.013 3.987 19 C 0.067 3.933 20 O -0.400 6.400 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.049 0.951 32 H -0.011 1.011 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.059 0.941 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 2.607 -8.618 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 H 0.083 0.917 4 C -0.105 4.105 5 N -0.274 5.274 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.135 4.135 9 C -0.014 4.014 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.201 4.201 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.116 4.116 19 C -0.010 4.010 20 O -0.320 6.320 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.330 3.048 -8.805 20.562 hybrid contribution 0.869 -1.083 0.884 1.645 sum -17.461 1.965 -7.922 19.275 Atomic orbital electron populations 1.21750 0.91058 1.03103 1.03732 1.22312 0.96121 0.95269 0.83607 0.91724 1.22885 0.87093 1.00214 1.00261 1.62231 1.09429 1.53230 1.02465 1.22063 0.94876 0.96768 0.92399 1.21482 0.94317 1.00600 0.97629 1.21402 0.95837 0.99319 0.96918 1.19019 0.92357 0.94871 0.95163 1.21774 0.92871 1.35604 1.07971 0.92197 1.26025 0.97660 0.96105 1.00282 1.70112 1.03885 1.45241 1.38237 0.85375 0.78410 0.78207 0.78906 1.18536 1.20334 1.20277 1.22874 1.01653 0.96027 0.91008 1.22720 0.80312 1.00580 0.97393 1.87942 1.21773 1.78720 1.43539 0.92141 0.89084 0.91205 0.94443 0.88502 0.94846 0.89964 0.92923 0.92509 0.92878 0.93260 0.99254 0.99167 0.92768 0.89546 0.94521 0.92223 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 2 C 0.08 1.68 3.42 30.62 0.10 1.78 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.02 0.50 4.93 86.31 0.43 0.92 16 5 N -0.55 -14.18 4.73 -895.20 -4.23 -18.42 16 6 C 0.07 1.86 4.96 86.30 0.43 2.29 16 7 C -0.10 -3.54 5.14 30.59 0.16 -3.38 16 8 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 12 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 13 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 14 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 18 C 0.01 0.31 5.43 86.31 0.47 0.78 16 19 C 0.07 1.42 7.01 72.02 0.50 1.92 16 20 O -0.40 -9.34 10.47 -148.98 -1.56 -10.90 16 21 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 22 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.10 1.80 8.09 -2.39 -0.02 1.78 16 26 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 27 H 0.08 2.16 8.04 -2.39 -0.02 2.14 16 28 H 0.05 1.84 6.51 -2.39 -0.02 1.82 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.09 2.21 6.37 -2.39 -0.02 2.19 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -66.00 303.54 1.28 -64.72 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.99 Total: 6.02 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.78 Total: -30.65 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -3.95 Total: -76.01 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.56 Total: -10.90 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.00 1.28 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385816286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.802 kcal (2) G-P(sol) polarization free energy of solvation -66.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds