Wall clock time and date at job start Mon Mar 30 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47508 * 2 1 4 4 C 1.50705 * 109.47146 * 240.00241 * 2 1 3 5 5 H 1.08008 * 119.99989 * 240.00287 * 4 2 1 6 6 C 1.37876 * 119.99922 * 59.99459 * 4 2 1 7 7 N 1.31518 * 119.99844 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99873 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47153 * 90.00452 * 8 6 4 10 10 H 1.48502 * 109.47153 * 210.00503 * 8 6 4 11 11 H 1.48500 * 109.47063 * 330.00409 * 8 6 4 12 12 N 1.46899 * 109.47261 * 120.00484 * 2 1 3 13 13 C 1.46906 * 110.99956 * 274.99720 * 12 2 1 14 14 C 1.52991 * 109.47132 * 180.02562 * 13 12 2 15 15 H 1.09007 * 109.54716 * 305.17125 * 14 13 12 16 16 C 1.53176 * 109.54645 * 65.44426 * 14 13 12 17 17 C 1.53102 * 109.16158 * 176.84707 * 16 14 13 18 18 O 1.42906 * 109.41553 * 302.39034 * 17 16 14 19 19 C 1.42901 * 114.09713 * 61.15748 * 18 17 16 20 20 H 1.09002 * 109.48002 * 178.86041 * 19 18 17 21 21 C 1.53006 * 109.48873 * 58.83043 * 19 18 17 22 22 C 1.53098 * 109.41540 * 298.84407 * 19 18 17 23 23 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46536 * 299.99915 * 1 2 3 25 25 H 1.09000 * 109.46877 * 59.99525 * 1 2 3 26 26 H 0.97003 * 119.99276 * 179.97438 * 7 6 4 27 27 H 1.00893 * 111.00282 * 38.94774 * 12 2 1 28 28 H 1.08993 * 109.46744 * 59.99791 * 13 12 2 29 29 H 1.09000 * 109.46618 * 300.00238 * 13 12 2 30 30 H 1.08996 * 109.51926 * 296.74947 * 16 14 13 31 31 H 1.08997 * 109.52219 * 56.94547 * 16 14 13 32 32 H 1.08995 * 109.48102 * 62.37682 * 17 16 14 33 33 H 1.09000 * 109.47603 * 182.39606 * 17 16 14 34 34 H 1.09001 * 109.47080 * 300.02908 * 21 19 18 35 35 H 1.08997 * 109.46578 * 60.02589 * 21 19 18 36 36 H 1.08998 * 109.47090 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.51720 * 177.51622 * 22 19 18 38 38 H 1.08992 * 109.51912 * 297.63799 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5963 -0.5330 3.5740 15 1 1.9737 -1.4104 3.7493 16 6 4.0454 -0.9697 3.3375 17 6 4.5761 -1.6550 4.5995 18 8 4.4711 -0.7581 5.7070 19 6 3.1335 -0.3530 6.0049 20 1 3.1387 0.3103 6.8699 21 6 2.2830 -1.5870 6.3131 22 6 2.5448 0.3847 4.7994 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7093 1.1618 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 1.0872 0.6162 2.5525 29 1 2.7589 1.0460 2.1181 30 1 4.0836 -1.6671 2.5007 31 1 4.6570 -0.0959 3.1129 32 1 3.9893 -2.5512 4.8005 33 1 5.6205 -1.9299 4.4518 34 1 2.2780 -2.2501 5.4480 35 1 2.7026 -2.1122 7.1711 36 1 1.2627 -1.2776 6.5398 37 1 1.5099 0.6558 5.0082 38 1 3.1255 1.2863 4.6051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389352047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:52 Heat of formation + Delta-G solvation = -66.318732 kcal Electronic energy + Delta-G solvation = -16399.081184 eV Core-core repulsion = 13854.636181 eV Total energy + Delta-G solvation = -2544.445003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72792 -36.32707 -33.98489 -32.30530 -31.70742 -28.90278 -27.72948 -25.19321 -24.61387 -23.22479 -21.35548 -20.20163 -19.03837 -16.57065 -16.02489 -15.85262 -14.85170 -14.72520 -14.52779 -14.28834 -13.46833 -13.16513 -13.07313 -12.56498 -12.27804 -11.91274 -11.62218 -11.57150 -11.54253 -11.12111 -10.94883 -10.80118 -10.68738 -10.48115 -10.21929 -10.11532 -9.95525 -9.76272 -9.28555 -8.94067 -8.34826 -7.18742 -5.96845 -4.00046 3.33329 3.39686 3.44340 3.93263 4.44949 4.78041 4.88002 4.96528 5.07514 5.22929 5.33867 5.34917 5.49925 5.52908 5.59526 5.69423 5.77415 5.91568 6.03992 6.05079 6.10212 6.21894 6.31614 6.41448 6.58920 6.69388 6.72043 6.85522 7.11912 7.32066 7.39841 7.75120 7.90464 8.30029 8.56817 8.64808 9.07237 9.65334 11.10241 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047154 B = 0.005496 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.655482 B = 5093.800718 C = 5424.796995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.066 3.934 14 C -0.085 4.085 15 H 0.067 0.933 16 C -0.139 4.139 17 C 0.055 3.945 18 O -0.383 6.383 19 C 0.088 3.912 20 H 0.096 0.904 21 C -0.186 4.186 22 C -0.145 4.145 23 H 0.027 0.973 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.322 0.678 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -2.980 14.910 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.064 4.064 14 C -0.104 4.104 15 H 0.085 0.915 16 C -0.176 4.176 17 C -0.021 4.021 18 O -0.302 6.302 19 C 0.030 3.970 20 H 0.114 0.886 21 C -0.244 4.244 22 C -0.183 4.183 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.138 0.862 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.136 -2.709 14.692 15.265 hybrid contribution -1.071 -0.332 -0.890 1.432 sum 2.065 -3.041 13.802 14.283 Atomic orbital electron populations 1.22425 1.00839 0.99098 1.00403 1.19161 0.89498 0.94401 0.86643 0.95013 1.21168 1.30083 1.12340 0.89638 0.91995 1.24961 0.95395 0.95210 0.99057 1.69891 1.37462 1.23207 1.23282 0.86511 0.79221 0.79227 0.82501 1.20878 1.21397 1.19888 1.60793 1.57817 1.09015 1.03506 1.21915 0.98042 0.95870 0.90571 1.21213 0.96887 0.98114 0.94151 0.91499 1.22097 0.95751 1.01971 0.97816 1.22671 1.01307 0.91982 0.86184 1.87937 1.26616 1.65397 1.50242 1.22117 0.82670 0.95145 0.97044 0.88617 1.22458 1.00412 0.99212 1.02289 1.22223 1.01330 0.99394 0.95352 0.95417 0.97720 0.89331 0.93117 0.86158 0.96547 0.91859 0.89402 0.91488 0.93277 0.89353 0.91556 0.92238 0.91695 0.91312 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.32 2.57 -68.86 -0.18 5.14 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.02 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.30 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.68 -14.28 5.77 -107.96 -0.62 -14.90 16 13 C 0.07 1.18 4.88 -3.83 -0.02 1.16 16 14 C -0.08 -1.21 2.11 -90.44 -0.19 -1.40 16 15 H 0.07 0.93 6.62 -51.92 -0.34 0.59 16 16 C -0.14 -1.98 5.27 -26.59 -0.14 -2.13 16 17 C 0.05 0.68 6.52 37.21 0.24 0.93 16 18 O -0.38 -5.15 10.60 -35.23 -0.37 -5.52 16 19 C 0.09 1.01 3.91 -26.68 -0.10 0.90 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.19 -1.89 8.65 37.16 0.32 -1.56 16 22 C -0.14 -1.80 4.92 -26.59 -0.13 -1.93 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.32 6.42 8.47 -39.30 -0.33 6.09 16 28 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 29 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 30 H 0.09 1.37 7.87 -51.93 -0.41 0.96 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.71 4.98 -51.93 -0.26 0.46 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -28.68 292.81 -7.75 -36.44 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.51 Total: 3.53 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.26 Total: -15.24 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.00 Total: -40.19 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.37 Total: -5.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.68 -7.75 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389352047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds