Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47508 * 2 1 4 4 C 1.50705 * 109.47146 * 240.00241 * 2 1 3 5 5 H 1.08008 * 119.99989 * 240.00287 * 4 2 1 6 6 C 1.37876 * 119.99922 * 59.99459 * 4 2 1 7 7 N 1.31518 * 119.99844 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99873 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47153 * 90.00452 * 8 6 4 10 10 H 1.48502 * 109.47153 * 210.00503 * 8 6 4 11 11 H 1.48500 * 109.47063 * 330.00409 * 8 6 4 12 12 N 1.46899 * 109.47261 * 120.00484 * 2 1 3 13 13 C 1.46906 * 110.99956 * 274.99720 * 12 2 1 14 14 C 1.52991 * 109.47132 * 180.02562 * 13 12 2 15 15 H 1.09007 * 109.54716 * 305.17125 * 14 13 12 16 16 C 1.53176 * 109.54645 * 65.44426 * 14 13 12 17 17 C 1.53102 * 109.16158 * 176.84707 * 16 14 13 18 18 O 1.42906 * 109.41553 * 302.39034 * 17 16 14 19 19 C 1.42901 * 114.09713 * 61.15748 * 18 17 16 20 20 H 1.09002 * 109.48002 * 178.86041 * 19 18 17 21 21 C 1.53006 * 109.48873 * 58.83043 * 19 18 17 22 22 C 1.53098 * 109.41540 * 298.84407 * 19 18 17 23 23 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46536 * 299.99915 * 1 2 3 25 25 H 1.09000 * 109.46877 * 59.99525 * 1 2 3 26 26 H 0.97003 * 119.99276 * 179.97438 * 7 6 4 27 27 H 1.00893 * 111.00282 * 38.94774 * 12 2 1 28 28 H 1.08993 * 109.46744 * 59.99791 * 13 12 2 29 29 H 1.09000 * 109.46618 * 300.00238 * 13 12 2 30 30 H 1.08996 * 109.51926 * 296.74947 * 16 14 13 31 31 H 1.08997 * 109.52219 * 56.94547 * 16 14 13 32 32 H 1.08995 * 109.48102 * 62.37682 * 17 16 14 33 33 H 1.09000 * 109.47603 * 182.39606 * 17 16 14 34 34 H 1.09001 * 109.47080 * 300.02908 * 21 19 18 35 35 H 1.08997 * 109.46578 * 60.02589 * 21 19 18 36 36 H 1.08998 * 109.47090 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.51720 * 177.51622 * 22 19 18 38 38 H 1.08992 * 109.51912 * 297.63799 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5963 -0.5330 3.5740 15 1 1.9737 -1.4104 3.7493 16 6 4.0454 -0.9697 3.3375 17 6 4.5761 -1.6550 4.5995 18 8 4.4711 -0.7581 5.7070 19 6 3.1335 -0.3530 6.0049 20 1 3.1387 0.3103 6.8699 21 6 2.2830 -1.5870 6.3131 22 6 2.5448 0.3847 4.7994 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7093 1.1618 -3.4844 27 1 1.4496 -1.4979 1.4100 28 1 1.0872 0.6162 2.5525 29 1 2.7589 1.0460 2.1181 30 1 4.0836 -1.6671 2.5007 31 1 4.6570 -0.0959 3.1129 32 1 3.9893 -2.5512 4.8005 33 1 5.6205 -1.9299 4.4518 34 1 2.2780 -2.2501 5.4480 35 1 2.7026 -2.1122 7.1711 36 1 1.2627 -1.2776 6.5398 37 1 1.5099 0.6558 5.0082 38 1 3.1255 1.2863 4.6051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389352047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = -84.710808 kcal Electronic energy + Delta-G solvation = -16399.878724 eV Core-core repulsion = 13854.636181 eV Total energy + Delta-G solvation = -2545.242543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76738 -37.98491 -35.53731 -33.83520 -32.98054 -30.44448 -28.94044 -27.25493 -26.01429 -24.28276 -22.64217 -22.12457 -20.10630 -18.40672 -17.28831 -16.91253 -16.66716 -16.06476 -15.97614 -15.34336 -15.16507 -14.62500 -14.35855 -13.91942 -13.53708 -13.37797 -13.28931 -12.89666 -12.80635 -12.63631 -12.57019 -12.40904 -12.18020 -12.08123 -11.93114 -11.68907 -11.36133 -11.08005 -10.84532 -10.48954 -10.29750 -8.93280 -8.09655 -6.21004 1.43053 1.43811 1.54929 2.44197 3.00459 3.18670 3.54924 3.80408 3.89433 4.07486 4.13006 4.28950 4.46102 4.50326 4.56960 4.64675 4.70043 4.72711 4.76741 4.85794 4.93764 4.96026 5.06534 5.09974 5.11658 5.22623 5.33966 5.38938 5.44772 5.54083 5.69015 5.81857 6.27369 6.36825 6.65396 6.84704 6.95552 7.49291 8.95974 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047154 B = 0.005496 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.655482 B = 5093.800718 C = 5424.796995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.004 1.004 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.076 4.076 15 H 0.077 0.923 16 C -0.136 4.136 17 C 0.060 3.940 18 O -0.397 6.397 19 C 0.085 3.915 20 H 0.113 0.887 21 C -0.183 4.183 22 C -0.141 4.141 23 H 0.033 0.967 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -4.057 16.006 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.312 5.312 13 C -0.060 4.060 14 C -0.095 4.095 15 H 0.095 0.905 16 C -0.174 4.174 17 C -0.017 4.017 18 O -0.317 6.317 19 C 0.028 3.972 20 H 0.131 0.869 21 C -0.240 4.240 22 C -0.179 4.179 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.082 -3.794 15.810 16.548 hybrid contribution -1.055 0.046 -1.195 1.595 sum 2.027 -3.748 14.615 15.223 Atomic orbital electron populations 1.22229 1.00029 0.99271 0.99948 1.18926 0.90012 0.92549 0.87905 0.98557 1.21464 1.30317 1.12406 0.91032 0.92631 1.25746 0.95504 0.95880 1.01991 1.70022 1.38206 1.24314 1.23951 0.85498 0.78802 0.78187 0.78756 1.20003 1.21078 1.19504 1.60642 1.57600 1.09499 1.03419 1.21930 0.97846 0.95352 0.90876 1.21133 0.96745 0.98410 0.93201 0.90453 1.22038 0.95702 1.01116 0.98551 1.22659 1.02149 0.91968 0.84885 1.87927 1.27914 1.65630 1.50211 1.22283 0.82029 0.96015 0.96894 0.86915 1.22426 1.00935 0.98353 1.02286 1.22203 1.02204 0.98669 0.94856 0.94771 0.95763 0.92101 0.93052 0.85216 0.96413 0.93695 0.90907 0.93138 0.91956 0.88306 0.92262 0.91431 0.90356 0.89944 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.94 71.98 0.64 -6.89 16 2 C 0.21 11.01 2.57 44.17 0.11 11.13 16 3 H 0.00 -0.20 7.80 -2.39 -0.02 -0.22 16 4 C -0.51 -28.80 8.84 25.60 0.23 -28.57 16 5 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.68 -28.55 5.77 -495.47 -2.86 -31.41 16 13 C 0.07 2.46 4.88 86.30 0.42 2.89 16 14 C -0.08 -2.08 2.11 -10.68 -0.02 -2.11 16 15 H 0.08 1.99 6.62 -2.38 -0.02 1.98 16 16 C -0.14 -3.82 5.27 30.69 0.16 -3.66 16 17 C 0.06 1.39 6.52 72.02 0.47 1.85 16 18 O -0.40 -9.88 10.60 -148.98 -1.58 -11.46 16 19 C 0.09 1.74 3.91 30.63 0.12 1.86 16 20 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.18 -3.14 8.65 71.98 0.62 -2.52 16 22 C -0.14 -3.25 4.92 30.69 0.15 -3.10 16 23 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 24 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 25 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.33 12.91 8.47 -89.70 -0.76 12.15 16 28 H 0.02 0.63 7.44 -2.39 -0.02 0.61 16 29 H 0.04 1.74 8.06 -2.39 -0.02 1.72 16 30 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.30 6.34 -2.39 -0.02 1.28 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.10 4.98 -2.39 -0.01 1.09 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -60.91 292.81 1.45 -59.46 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.26 Total: 19.12 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.36 Total: -28.31 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.62 Total: -85.12 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.58 Total: -11.46 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.91 1.45 -59.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389352047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.251 kcal (2) G-P(sol) polarization free energy of solvation -60.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds