Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2 15 15 H 1.08995 * 109.53970 * 304.99971 * 14 13 12 16 16 C 1.53177 * 109.54344 * 65.17912 * 14 13 12 17 17 C 1.53091 * 109.16269 * 176.84812 * 16 14 13 18 18 O 1.42905 * 109.41402 * 302.38790 * 17 16 14 19 19 C 1.42909 * 114.09523 * 61.16235 * 18 17 16 20 20 H 1.08993 * 109.48429 * 58.83229 * 19 18 17 21 21 C 1.52993 * 109.47921 * 178.85951 * 19 18 17 22 22 C 1.53110 * 109.48326 * 298.88502 * 19 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 30 30 H 1.09000 * 109.52069 * 296.75687 * 16 14 13 31 31 H 1.08998 * 109.51886 * 56.93964 * 16 14 13 32 32 H 1.09000 * 109.48141 * 62.37136 * 17 16 14 33 33 H 1.09001 * 109.47843 * 182.40851 * 17 16 14 34 34 H 1.08997 * 109.47807 * 59.99685 * 21 19 18 35 35 H 1.09003 * 109.47498 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47298 * 299.99976 * 21 19 18 37 37 H 1.08997 * 109.45114 * 297.61622 * 22 19 18 38 38 H 1.09005 * 109.59109 * 177.42396 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 1.9698 -1.4083 3.7512 16 6 4.0417 -0.9765 3.3362 17 6 4.5716 -1.6620 4.5983 18 8 4.4725 -0.7628 5.7046 19 6 3.1371 -0.3514 6.0041 20 1 2.5279 -1.2275 6.2263 21 6 3.1505 0.5815 7.2166 22 6 2.5475 0.3862 4.7989 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.9173 -1.1204 1.0288 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 4.0755 -1.6754 2.5005 31 1 4.6567 -0.1057 3.1091 32 1 3.9812 -2.5553 4.8019 33 1 5.6146 -1.9415 4.4494 34 1 3.7594 1.4578 6.9942 35 1 2.1320 0.8957 7.4448 36 1 3.5699 0.0562 8.0747 37 1 3.1315 1.2852 4.6023 38 1 1.5136 0.6607 5.0084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389352049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -70.706623 kcal Electronic energy + Delta-G solvation = -16243.020289 eV Core-core repulsion = 13698.385013 eV Total energy + Delta-G solvation = -2544.635276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50679 -36.29783 -33.97059 -32.77881 -31.81676 -28.73278 -27.69302 -25.37213 -24.54527 -23.11827 -21.15780 -19.81920 -19.68690 -16.55065 -16.27116 -15.70829 -15.09145 -14.93373 -14.38580 -14.17424 -13.43364 -13.17898 -13.00842 -12.54605 -12.34328 -12.14865 -11.84508 -11.66864 -11.22931 -11.07520 -10.93238 -10.80453 -10.70456 -10.31585 -10.24034 -10.16178 -10.06714 -9.89629 -9.28924 -8.79982 -8.47278 -7.24899 -6.02551 -4.09168 3.29578 3.35867 3.38763 3.79545 4.39547 4.69919 4.88845 4.99186 5.07587 5.17545 5.28548 5.34637 5.43643 5.51839 5.58051 5.67562 5.73771 5.85534 5.97740 6.00018 6.06584 6.19836 6.25874 6.31140 6.49461 6.65220 6.89929 7.14867 7.24696 7.28370 7.52028 7.78083 7.90783 8.28143 8.40486 8.68960 9.01858 9.56871 11.03802 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049412 B = 0.005268 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.531343 B = 5314.100802 C = 5717.211968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.689 5.689 13 C 0.068 3.932 14 C -0.087 4.087 15 H 0.076 0.924 16 C -0.152 4.152 17 C 0.064 3.936 18 O -0.385 6.385 19 C 0.087 3.913 20 H 0.055 0.945 21 C -0.144 4.144 22 C -0.144 4.144 23 H 0.031 0.969 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -1.724 14.884 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.190 4.190 17 C -0.013 4.013 18 O -0.305 6.305 19 C 0.029 3.971 20 H 0.073 0.927 21 C -0.201 4.201 22 C -0.182 4.182 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.518 -1.777 15.000 15.509 hybrid contribution 0.763 0.052 -1.387 1.584 sum 4.282 -1.724 13.613 14.374 Atomic orbital electron populations 1.21708 0.97942 0.99265 0.99278 1.19100 0.92601 0.92314 0.85707 0.98280 1.21265 1.31443 1.12453 0.90511 0.92292 1.24924 0.95061 0.94981 0.99047 1.69898 1.36673 1.22900 1.23438 0.86522 0.79203 0.79332 0.82475 1.20611 1.21272 1.19946 1.60761 1.31981 1.33234 1.06124 1.21897 0.99409 0.93909 0.91041 1.21232 0.95947 0.98790 0.94602 0.90566 1.22249 0.96769 1.01629 0.98327 1.22555 1.01354 0.91500 0.85858 1.87881 1.27238 1.65189 1.50156 1.22069 0.83941 0.96593 0.94507 0.92680 1.21762 1.02234 0.99446 0.96685 1.22253 1.01503 0.99413 0.95013 0.95021 0.90156 0.97789 0.92936 0.85348 0.96412 0.91912 0.90223 0.91424 0.93355 0.89193 0.91911 0.91189 0.92152 0.91250 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.43 2.60 -68.87 -0.18 5.25 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.36 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -14.85 6.30 -107.95 -0.68 -15.53 16 13 C 0.07 1.23 4.95 -3.83 -0.02 1.21 16 14 C -0.09 -1.27 2.48 -90.44 -0.22 -1.50 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.15 -2.09 5.12 -26.59 -0.14 -2.23 16 17 C 0.06 0.78 6.84 37.20 0.25 1.03 16 18 O -0.39 -5.16 10.41 -35.23 -0.37 -5.53 16 19 C 0.09 1.02 3.26 -26.68 -0.09 0.93 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.14 -1.39 9.56 37.15 0.36 -1.03 16 22 C -0.14 -1.82 4.71 -26.58 -0.13 -1.94 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.33 6.87 6.56 -39.29 -0.26 6.62 16 28 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 29 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 30 H 0.08 1.12 6.84 -51.93 -0.36 0.77 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -29.01 297.21 -7.88 -36.90 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.71 Total: 2.52 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.21 Total: -14.11 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.05 Total: -40.59 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.01 -7.88 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389352049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.812 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds