Wall clock time and date at job start Mon Mar 30 2020 03:06:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3
5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1
6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1
7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4
10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4
11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4
12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1
14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2
15 15 H 1.08995 * 109.53970 * 304.99971 * 14 13 12
16 16 C 1.53177 * 109.54344 * 65.17912 * 14 13 12
17 17 C 1.53091 * 109.16269 * 176.84812 * 16 14 13
18 18 O 1.42905 * 109.41402 * 302.38790 * 17 16 14
19 19 C 1.42909 * 114.09523 * 61.16235 * 18 17 16
20 20 H 1.08993 * 109.48429 * 58.83229 * 19 18 17
21 21 C 1.52993 * 109.47921 * 178.85951 * 19 18 17
22 22 C 1.53110 * 109.48326 * 298.88502 * 19 18 17
23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4
27 27 H 1.00902 * 110.99927 * 151.04624 * 12 2 1
28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2
29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2
30 30 H 1.09000 * 109.52069 * 296.75687 * 16 14 13
31 31 H 1.08998 * 109.51886 * 56.93964 * 16 14 13
32 32 H 1.09000 * 109.48141 * 62.37136 * 17 16 14
33 33 H 1.09001 * 109.47843 * 182.40851 * 17 16 14
34 34 H 1.08997 * 109.47807 * 59.99685 * 21 19 18
35 35 H 1.09003 * 109.47498 * 179.97438 * 21 19 18
36 36 H 1.08999 * 109.47298 * 299.99976 * 21 19 18
37 37 H 1.08997 * 109.45114 * 297.61622 * 22 19 18
38 38 H 1.09005 * 109.59109 * 177.42396 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1312
6 6 1.6993 -0.2393 -2.4827
7 7 0.9428 0.8296 -2.6034
8 14 2.3215 -1.1204 -4.0079
9 1 1.3429 -2.1618 -4.4118
10 1 2.4867 -0.1415 -5.1122
11 1 3.6294 -1.7584 -3.7121
12 7 2.0196 -0.6924 1.1995
13 6 2.0824 0.2226 2.3469
14 6 2.5950 -0.5331 3.5746
15 1 1.9698 -1.4083 3.7512
16 6 4.0417 -0.9765 3.3362
17 6 4.5716 -1.6620 4.5983
18 8 4.4725 -0.7628 5.7046
19 6 3.1371 -0.3514 6.0041
20 1 2.5279 -1.2275 6.2263
21 6 3.1505 0.5815 7.2166
22 6 2.5475 0.3862 4.7989
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 0.5139 0.8900
26 1 0.7089 1.1612 -3.4844
27 1 2.9173 -1.1204 1.0288
28 1 2.7588 1.0463 2.1182
29 1 1.0870 0.6164 2.5525
30 1 4.0755 -1.6754 2.5005
31 1 4.6567 -0.1057 3.1091
32 1 3.9812 -2.5553 4.8019
33 1 5.6146 -1.9415 4.4494
34 1 3.7594 1.4578 6.9942
35 1 2.1320 0.8957 7.4448
36 1 3.5699 0.0562 8.0747
37 1 3.1315 1.2852 4.6023
38 1 1.5136 0.6607 5.0084
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000389352049.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:04
Heat of formation + Delta-G solvation = -70.706623 kcal
Electronic energy + Delta-G solvation = -16243.020289 eV
Core-core repulsion = 13698.385013 eV
Total energy + Delta-G solvation = -2544.635276 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.50679 -36.29783 -33.97059 -32.77881 -31.81676 -28.73278 -27.69302 -25.37213
-24.54527 -23.11827 -21.15780 -19.81920 -19.68690 -16.55065 -16.27116 -15.70829
-15.09145 -14.93373 -14.38580 -14.17424 -13.43364 -13.17898 -13.00842 -12.54605
-12.34328 -12.14865 -11.84508 -11.66864 -11.22931 -11.07520 -10.93238 -10.80453
-10.70456 -10.31585 -10.24034 -10.16178 -10.06714 -9.89629 -9.28924 -8.79982
-8.47278 -7.24899 -6.02551 -4.09168 3.29578 3.35867 3.38763 3.79545
4.39547 4.69919 4.88845 4.99186 5.07587 5.17545 5.28548 5.34637
5.43643 5.51839 5.58051 5.67562 5.73771 5.85534 5.97740 6.00018
6.06584 6.19836 6.25874 6.31140 6.49461 6.65220 6.89929 7.14867
7.24696 7.28370 7.52028 7.78083 7.90783 8.28143 8.40486 8.68960
9.01858 9.56871 11.03802
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.049412 B = 0.005268 C = 0.004896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.531343 B = 5314.100802 C = 5717.211968
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.210 3.790
3 H 0.000 1.000
4 C -0.518 4.518
5 H 0.059 0.941
6 C 0.062 3.938
7 N -0.890 5.890
8 Si 0.897 3.103
9 H -0.280 1.280
10 H -0.287 1.287
11 H -0.275 1.275
12 N -0.689 5.689
13 C 0.068 3.932
14 C -0.087 4.087
15 H 0.076 0.924
16 C -0.152 4.152
17 C 0.064 3.936
18 O -0.385 6.385
19 C 0.087 3.913
20 H 0.055 0.945
21 C -0.144 4.144
22 C -0.144 4.144
23 H 0.031 0.969
24 H 0.080 0.920
25 H 0.003 0.997
26 H 0.261 0.739
27 H 0.329 0.671
28 H 0.018 0.982
29 H 0.062 0.938
30 H 0.079 0.921
31 H 0.067 0.933
32 H 0.048 0.952
33 H 0.090 0.910
34 H 0.062 0.938
35 H 0.069 0.931
36 H 0.059 0.941
37 H 0.069 0.931
38 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.070 -1.724 14.884 15.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.103 3.897
3 H 0.017 0.983
4 C -0.557 4.557
5 H 0.077 0.923
6 C -0.140 4.140
7 N -0.529 5.529
8 Si 0.725 3.275
9 H -0.206 1.206
10 H -0.213 1.213
11 H -0.199 1.199
12 N -0.321 5.321
13 C -0.063 4.063
14 C -0.106 4.106
15 H 0.094 0.906
16 C -0.190 4.190
17 C -0.013 4.013
18 O -0.305 6.305
19 C 0.029 3.971
20 H 0.073 0.927
21 C -0.201 4.201
22 C -0.182 4.182
23 H 0.050 0.950
24 H 0.098 0.902
25 H 0.022 0.978
26 H 0.071 0.929
27 H 0.147 0.853
28 H 0.036 0.964
29 H 0.081 0.919
30 H 0.098 0.902
31 H 0.086 0.914
32 H 0.066 0.934
33 H 0.108 0.892
34 H 0.081 0.919
35 H 0.088 0.912
36 H 0.078 0.922
37 H 0.087 0.913
38 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 3.518 -1.777 15.000 15.509
hybrid contribution 0.763 0.052 -1.387 1.584
sum 4.282 -1.724 13.613 14.374
Atomic orbital electron populations
1.21708 0.97942 0.99265 0.99278 1.19100 0.92601 0.92314 0.85707
0.98280 1.21265 1.31443 1.12453 0.90511 0.92292 1.24924 0.95061
0.94981 0.99047 1.69898 1.36673 1.22900 1.23438 0.86522 0.79203
0.79332 0.82475 1.20611 1.21272 1.19946 1.60761 1.31981 1.33234
1.06124 1.21897 0.99409 0.93909 0.91041 1.21232 0.95947 0.98790
0.94602 0.90566 1.22249 0.96769 1.01629 0.98327 1.22555 1.01354
0.91500 0.85858 1.87881 1.27238 1.65189 1.50156 1.22069 0.83941
0.96593 0.94507 0.92680 1.21762 1.02234 0.99446 0.96685 1.22253
1.01503 0.99413 0.95013 0.95021 0.90156 0.97789 0.92936 0.85348
0.96412 0.91912 0.90223 0.91424 0.93355 0.89193 0.91911 0.91189
0.92152 0.91250 0.90990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16
2 C 0.21 5.43 2.60 -68.87 -0.18 5.25 16
3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16
4 C -0.52 -14.36 8.59 -34.44 -0.30 -14.66 16
5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16
6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16
7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16
8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16
9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
12 N -0.69 -14.85 6.30 -107.95 -0.68 -15.53 16
13 C 0.07 1.23 4.95 -3.83 -0.02 1.21 16
14 C -0.09 -1.27 2.48 -90.44 -0.22 -1.50 16
15 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
16 C -0.15 -2.09 5.12 -26.59 -0.14 -2.23 16
17 C 0.06 0.78 6.84 37.20 0.25 1.03 16
18 O -0.39 -5.16 10.41 -35.23 -0.37 -5.53 16
19 C 0.09 1.02 3.26 -26.68 -0.09 0.93 16
20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
21 C -0.14 -1.39 9.56 37.15 0.36 -1.03 16
22 C -0.14 -1.82 4.71 -26.58 -0.13 -1.94 16
23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16
25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16
26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
27 H 0.33 6.87 6.56 -39.29 -0.26 6.62 16
28 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16
29 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16
30 H 0.08 1.12 6.84 -51.93 -0.36 0.77 16
31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 297.21 15.07 4.48 4.48
Total: -1.00 -29.01 297.21 -7.88 -36.90
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -6.71 Total: 2.52 kcal
Atomic # 6 Polarization: -13.90 SS G_CDS: -0.21 Total: -14.11 kcal
Atomic # 7 Polarization: -40.53 SS G_CDS: -0.05 Total: -40.59 kcal
Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -29.01 -7.88 -36.90 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389352049.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.812 kcal
(2) G-P(sol) polarization free energy of solvation -29.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds