Wall clock time and date at job start Mon Mar 30 2020 03:06:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3
5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1
6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1
7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4
10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4
11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4
12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1
14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2
15 15 H 1.08995 * 109.53970 * 304.99971 * 14 13 12
16 16 C 1.53177 * 109.54344 * 65.17912 * 14 13 12
17 17 C 1.53091 * 109.16269 * 176.84812 * 16 14 13
18 18 O 1.42905 * 109.41402 * 302.38790 * 17 16 14
19 19 C 1.42909 * 114.09523 * 61.16235 * 18 17 16
20 20 H 1.08993 * 109.48429 * 58.83229 * 19 18 17
21 21 C 1.52993 * 109.47921 * 178.85951 * 19 18 17
22 22 C 1.53110 * 109.48326 * 298.88502 * 19 18 17
23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4
27 27 H 1.00902 * 110.99927 * 151.04624 * 12 2 1
28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2
29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2
30 30 H 1.09000 * 109.52069 * 296.75687 * 16 14 13
31 31 H 1.08998 * 109.51886 * 56.93964 * 16 14 13
32 32 H 1.09000 * 109.48141 * 62.37136 * 17 16 14
33 33 H 1.09001 * 109.47843 * 182.40851 * 17 16 14
34 34 H 1.08997 * 109.47807 * 59.99685 * 21 19 18
35 35 H 1.09003 * 109.47498 * 179.97438 * 21 19 18
36 36 H 1.08999 * 109.47298 * 299.99976 * 21 19 18
37 37 H 1.08997 * 109.45114 * 297.61622 * 22 19 18
38 38 H 1.09005 * 109.59109 * 177.42396 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1312
6 6 1.6993 -0.2393 -2.4827
7 7 0.9428 0.8296 -2.6034
8 14 2.3215 -1.1204 -4.0079
9 1 1.3429 -2.1618 -4.4118
10 1 2.4867 -0.1415 -5.1122
11 1 3.6294 -1.7584 -3.7121
12 7 2.0196 -0.6924 1.1995
13 6 2.0824 0.2226 2.3469
14 6 2.5950 -0.5331 3.5746
15 1 1.9698 -1.4083 3.7512
16 6 4.0417 -0.9765 3.3362
17 6 4.5716 -1.6620 4.5983
18 8 4.4725 -0.7628 5.7046
19 6 3.1371 -0.3514 6.0041
20 1 2.5279 -1.2275 6.2263
21 6 3.1505 0.5815 7.2166
22 6 2.5475 0.3862 4.7989
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 0.5139 0.8900
26 1 0.7089 1.1612 -3.4844
27 1 2.9173 -1.1204 1.0288
28 1 2.7588 1.0463 2.1182
29 1 1.0870 0.6164 2.5525
30 1 4.0755 -1.6754 2.5005
31 1 4.6567 -0.1057 3.1091
32 1 3.9812 -2.5553 4.8019
33 1 5.6146 -1.9415 4.4494
34 1 3.7594 1.4578 6.9942
35 1 2.1320 0.8957 7.4448
36 1 3.5699 0.0562 8.0747
37 1 3.1315 1.2852 4.6023
38 1 1.5136 0.6607 5.0084
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000389352049.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:01
Heat of formation + Delta-G solvation = -89.213365 kcal
Electronic energy + Delta-G solvation = -16243.822802 eV
Core-core repulsion = 13698.385013 eV
Total energy + Delta-G solvation = -2545.437788 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.56239 -37.95141 -35.58580 -33.85327 -33.48591 -30.41245 -28.86155 -27.38281
-26.00248 -24.22572 -22.36335 -21.58072 -20.98403 -18.55679 -17.24537 -16.97642
-16.70930 -16.38063 -15.77537 -15.47843 -14.88364 -14.74529 -14.55450 -13.88338
-13.50148 -13.38950 -13.11609 -12.98277 -12.78051 -12.71372 -12.60043 -12.36191
-12.21291 -12.01711 -11.92948 -11.73138 -11.43575 -11.11994 -10.88668 -10.58902
-10.34540 -9.08162 -8.14785 -6.29643 1.41859 1.42697 1.52973 2.40490
2.88771 3.13641 3.48594 3.78017 3.91000 4.00481 4.04803 4.28478
4.36869 4.48013 4.59262 4.62931 4.71564 4.77634 4.84455 4.88606
4.91988 4.99133 5.05274 5.10302 5.13539 5.19860 5.24887 5.33874
5.40801 5.50109 5.65736 5.84263 6.20292 6.34140 6.45415 6.75954
6.98694 7.41141 8.91051
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.049412 B = 0.005268 C = 0.004896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.531343 B = 5314.100802 C = 5717.211968
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C 0.213 3.787
3 H -0.035 1.035
4 C -0.539 4.539
5 H 0.060 0.940
6 C 0.013 3.987
7 N -0.919 5.919
8 Si 0.964 3.036
9 H -0.275 1.275
10 H -0.283 1.283
11 H -0.266 1.266
12 N -0.685 5.685
13 C 0.070 3.930
14 C -0.079 4.079
15 H 0.077 0.923
16 C -0.150 4.150
17 C 0.066 3.934
18 O -0.399 6.399
19 C 0.084 3.916
20 H 0.064 0.936
21 C -0.141 4.141
22 C -0.139 4.139
23 H 0.028 0.972
24 H 0.056 0.944
25 H 0.021 0.979
26 H 0.263 0.737
27 H 0.332 0.668
28 H 0.006 0.994
29 H 0.058 0.942
30 H 0.074 0.926
31 H 0.056 0.944
32 H 0.059 0.941
33 H 0.105 0.895
34 H 0.057 0.943
35 H 0.086 0.914
36 H 0.067 0.933
37 H 0.061 0.939
38 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.496 -2.705 15.750 16.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.105 3.895
3 H -0.017 1.017
4 C -0.577 4.577
5 H 0.078 0.922
6 C -0.187 4.187
7 N -0.558 5.558
8 Si 0.790 3.210
9 H -0.200 1.200
10 H -0.209 1.209
11 H -0.191 1.191
12 N -0.316 5.316
13 C -0.060 4.060
14 C -0.098 4.098
15 H 0.095 0.905
16 C -0.188 4.188
17 C -0.010 4.010
18 O -0.319 6.319
19 C 0.026 3.974
20 H 0.082 0.918
21 C -0.198 4.198
22 C -0.177 4.177
23 H 0.048 0.952
24 H 0.075 0.925
25 H 0.040 0.960
26 H 0.072 0.928
27 H 0.150 0.850
28 H 0.024 0.976
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.075 0.925
32 H 0.077 0.923
33 H 0.123 0.877
34 H 0.076 0.924
35 H 0.105 0.895
36 H 0.086 0.914
37 H 0.080 0.920
38 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 3.951 -2.764 15.889 16.605
hybrid contribution 0.616 0.393 -1.624 1.781
sum 4.567 -2.371 14.265 15.164
Atomic orbital electron populations
1.21534 0.97704 0.98868 0.98967 1.18929 0.92811 0.90652 0.87156
1.01730 1.21589 1.31801 1.12721 0.91609 0.92196 1.25762 0.95126
0.95645 1.02136 1.70027 1.37474 1.24101 1.24214 0.85460 0.78907
0.78183 0.78496 1.20031 1.20897 1.19082 1.60690 1.32217 1.33332
1.05394 1.21944 0.99110 0.93570 0.91335 1.21143 0.96316 0.98696
0.93614 0.90489 1.22219 0.96033 1.01256 0.99289 1.22601 1.02449
0.91370 0.84590 1.87878 1.28249 1.65457 1.50299 1.22213 0.83360
0.97208 0.94599 0.91791 1.21773 1.03353 0.98812 0.95902 1.22228
1.02266 0.98710 0.94535 0.95245 0.92490 0.96045 0.92807 0.84969
0.97570 0.92399 0.90747 0.92492 0.92273 0.87684 0.92401 0.89474
0.91427 0.92017 0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.75 9.19 71.98 0.66 -5.09 16
2 C 0.21 11.16 2.60 44.17 0.11 11.28 16
3 H -0.03 -2.03 7.80 -2.39 -0.02 -2.05 16
4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16
5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16
6 C 0.01 0.70 5.30 84.66 0.45 1.14 16
7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16
8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16
9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
12 N -0.68 -29.55 6.30 -495.46 -3.12 -32.67 16
13 C 0.07 2.55 4.95 86.31 0.43 2.98 16
14 C -0.08 -2.23 2.48 -10.67 -0.03 -2.25 16
15 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
16 C -0.15 -3.99 5.12 30.68 0.16 -3.83 16
17 C 0.07 1.49 6.84 72.01 0.49 1.98 16
18 O -0.40 -9.90 10.41 -148.98 -1.55 -11.45 16
19 C 0.08 1.78 3.26 30.63 0.10 1.88 16
20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
21 C -0.14 -2.39 9.56 71.98 0.69 -1.70 16
22 C -0.14 -3.31 4.71 30.69 0.14 -3.17 16
23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16
24 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16
25 H 0.02 0.97 7.45 -2.38 -0.02 0.95 16
26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16
27 H 0.33 13.89 6.56 -89.69 -0.59 13.30 16
28 H 0.01 0.24 8.06 -2.39 -0.02 0.22 16
29 H 0.06 2.15 7.44 -2.39 -0.02 2.13 16
30 H 0.07 2.04 6.84 -2.39 -0.02 2.02 16
31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16
34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16
Total: -1.00 -61.20 297.21 1.45 -59.75
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: 0.42 Total: 18.67 kcal
Atomic # 6 Polarization: -30.02 SS G_CDS: 3.43 Total: -26.60 kcal
Atomic # 7 Polarization: -83.14 SS G_CDS: -2.88 Total: -86.02 kcal
Atomic # 8 Polarization: -9.90 SS G_CDS: -1.55 Total: -11.45 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal
Total: -61.20 1.45 -59.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389352049.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal
(2) G-P(sol) polarization free energy of solvation -61.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds