Wall clock time and date at job start Mon Mar 30 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2 15 15 H 1.08995 * 109.53970 * 304.99971 * 14 13 12 16 16 C 1.53177 * 109.54344 * 65.17912 * 14 13 12 17 17 C 1.53091 * 109.16269 * 176.84812 * 16 14 13 18 18 O 1.42905 * 109.41402 * 302.38790 * 17 16 14 19 19 C 1.42909 * 114.09523 * 61.16235 * 18 17 16 20 20 H 1.08993 * 109.48429 * 58.83229 * 19 18 17 21 21 C 1.52993 * 109.47921 * 178.85951 * 19 18 17 22 22 C 1.53110 * 109.48326 * 298.88502 * 19 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 30 30 H 1.09000 * 109.52069 * 296.75687 * 16 14 13 31 31 H 1.08998 * 109.51886 * 56.93964 * 16 14 13 32 32 H 1.09000 * 109.48141 * 62.37136 * 17 16 14 33 33 H 1.09001 * 109.47843 * 182.40851 * 17 16 14 34 34 H 1.08997 * 109.47807 * 59.99685 * 21 19 18 35 35 H 1.09003 * 109.47498 * 179.97438 * 21 19 18 36 36 H 1.08999 * 109.47298 * 299.99976 * 21 19 18 37 37 H 1.08997 * 109.45114 * 297.61622 * 22 19 18 38 38 H 1.09005 * 109.59109 * 177.42396 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 1.9698 -1.4083 3.7512 16 6 4.0417 -0.9765 3.3362 17 6 4.5716 -1.6620 4.5983 18 8 4.4725 -0.7628 5.7046 19 6 3.1371 -0.3514 6.0041 20 1 2.5279 -1.2275 6.2263 21 6 3.1505 0.5815 7.2166 22 6 2.5475 0.3862 4.7989 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.9173 -1.1204 1.0288 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 4.0755 -1.6754 2.5005 31 1 4.6567 -0.1057 3.1091 32 1 3.9812 -2.5553 4.8019 33 1 5.6146 -1.9415 4.4494 34 1 3.7594 1.4578 6.9942 35 1 2.1320 0.8957 7.4448 36 1 3.5699 0.0562 8.0747 37 1 3.1315 1.2852 4.6023 38 1 1.5136 0.6607 5.0084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389352049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:01 Heat of formation + Delta-G solvation = -89.213365 kcal Electronic energy + Delta-G solvation = -16243.822802 eV Core-core repulsion = 13698.385013 eV Total energy + Delta-G solvation = -2545.437788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56239 -37.95141 -35.58580 -33.85327 -33.48591 -30.41245 -28.86155 -27.38281 -26.00248 -24.22572 -22.36335 -21.58072 -20.98403 -18.55679 -17.24537 -16.97642 -16.70930 -16.38063 -15.77537 -15.47843 -14.88364 -14.74529 -14.55450 -13.88338 -13.50148 -13.38950 -13.11609 -12.98277 -12.78051 -12.71372 -12.60043 -12.36191 -12.21291 -12.01711 -11.92948 -11.73138 -11.43575 -11.11994 -10.88668 -10.58902 -10.34540 -9.08162 -8.14785 -6.29643 1.41859 1.42697 1.52973 2.40490 2.88771 3.13641 3.48594 3.78017 3.91000 4.00481 4.04803 4.28478 4.36869 4.48013 4.59262 4.62931 4.71564 4.77634 4.84455 4.88606 4.91988 4.99133 5.05274 5.10302 5.13539 5.19860 5.24887 5.33874 5.40801 5.50109 5.65736 5.84263 6.20292 6.34140 6.45415 6.75954 6.98694 7.41141 8.91051 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049412 B = 0.005268 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.531343 B = 5314.100802 C = 5717.211968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.035 1.035 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.685 5.685 13 C 0.070 3.930 14 C -0.079 4.079 15 H 0.077 0.923 16 C -0.150 4.150 17 C 0.066 3.934 18 O -0.399 6.399 19 C 0.084 3.916 20 H 0.064 0.936 21 C -0.141 4.141 22 C -0.139 4.139 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.006 0.994 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -2.705 15.750 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.017 1.017 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.316 5.316 13 C -0.060 4.060 14 C -0.098 4.098 15 H 0.095 0.905 16 C -0.188 4.188 17 C -0.010 4.010 18 O -0.319 6.319 19 C 0.026 3.974 20 H 0.082 0.918 21 C -0.198 4.198 22 C -0.177 4.177 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.024 0.976 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.951 -2.764 15.889 16.605 hybrid contribution 0.616 0.393 -1.624 1.781 sum 4.567 -2.371 14.265 15.164 Atomic orbital electron populations 1.21534 0.97704 0.98868 0.98967 1.18929 0.92811 0.90652 0.87156 1.01730 1.21589 1.31801 1.12721 0.91609 0.92196 1.25762 0.95126 0.95645 1.02136 1.70027 1.37474 1.24101 1.24214 0.85460 0.78907 0.78183 0.78496 1.20031 1.20897 1.19082 1.60690 1.32217 1.33332 1.05394 1.21944 0.99110 0.93570 0.91335 1.21143 0.96316 0.98696 0.93614 0.90489 1.22219 0.96033 1.01256 0.99289 1.22601 1.02449 0.91370 0.84590 1.87878 1.28249 1.65457 1.50299 1.22213 0.83360 0.97208 0.94599 0.91791 1.21773 1.03353 0.98812 0.95902 1.22228 1.02266 0.98710 0.94535 0.95245 0.92490 0.96045 0.92807 0.84969 0.97570 0.92399 0.90747 0.92492 0.92273 0.87684 0.92401 0.89474 0.91427 0.92017 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 9.19 71.98 0.66 -5.09 16 2 C 0.21 11.16 2.60 44.17 0.11 11.28 16 3 H -0.03 -2.03 7.80 -2.39 -0.02 -2.05 16 4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.70 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.68 -29.55 6.30 -495.46 -3.12 -32.67 16 13 C 0.07 2.55 4.95 86.31 0.43 2.98 16 14 C -0.08 -2.23 2.48 -10.67 -0.03 -2.25 16 15 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.15 -3.99 5.12 30.68 0.16 -3.83 16 17 C 0.07 1.49 6.84 72.01 0.49 1.98 16 18 O -0.40 -9.90 10.41 -148.98 -1.55 -11.45 16 19 C 0.08 1.78 3.26 30.63 0.10 1.88 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.14 -2.39 9.56 71.98 0.69 -1.70 16 22 C -0.14 -3.31 4.71 30.69 0.14 -3.17 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 25 H 0.02 0.97 7.45 -2.38 -0.02 0.95 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.33 13.89 6.56 -89.69 -0.59 13.30 16 28 H 0.01 0.24 8.06 -2.39 -0.02 0.22 16 29 H 0.06 2.15 7.44 -2.39 -0.02 2.13 16 30 H 0.07 2.04 6.84 -2.39 -0.02 2.02 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -61.20 297.21 1.45 -59.75 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.42 Total: 18.67 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 3.43 Total: -26.60 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.88 Total: -86.02 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.55 Total: -11.45 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -61.20 1.45 -59.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389352049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds