Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.89329 * 2 1 4 4 C 1.54378 * 109.82837 * 239.07223 * 2 1 3 5 5 C 1.55309 * 102.25014 * 219.13100 * 4 2 1 6 6 C 1.54944 * 100.94264 * 34.13276 * 5 4 2 7 7 H 1.08994 * 110.31231 * 82.47388 * 6 5 4 8 8 C 1.53001 * 110.31101 * 204.64479 * 6 5 4 9 9 N 1.46892 * 109.47426 * 182.16545 * 8 6 5 10 10 C 1.46899 * 111.00503 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47456 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47059 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99974 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46887 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47035 * 120.00166 * 17 15 13 20 20 H 1.48495 * 109.46595 * 239.99753 * 17 15 13 21 21 O 1.43236 * 109.82846 * 120.93714 * 2 1 3 22 22 H 1.09002 * 109.47234 * 300.51656 * 1 2 3 23 23 H 1.09002 * 109.47126 * 60.51940 * 1 2 3 24 24 H 1.09002 * 109.47243 * 180.51822 * 1 2 3 25 25 H 1.08997 * 110.85123 * 100.93782 * 4 2 1 26 26 H 1.09007 * 110.84905 * 337.31125 * 4 2 1 27 27 H 1.09000 * 111.12311 * 276.21255 * 5 4 2 28 28 H 1.08999 * 111.16419 * 152.06915 * 5 4 2 29 29 H 1.09008 * 109.46663 * 302.16716 * 8 6 5 30 30 H 1.08999 * 109.47075 * 62.15925 * 8 6 5 31 31 H 1.00902 * 110.99942 * 56.04260 * 9 8 6 32 32 H 1.09003 * 109.46781 * 300.00334 * 10 9 8 33 33 H 1.09000 * 109.46623 * 59.99704 * 10 9 8 34 34 H 1.09003 * 109.47404 * 299.99960 * 11 10 9 35 35 H 1.09000 * 109.47441 * 60.00212 * 11 10 9 36 36 H 1.09003 * 109.47352 * 299.99872 * 12 11 10 37 37 H 1.09000 * 109.47316 * 60.00112 * 12 11 10 38 38 H 0.97004 * 119.99711 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 -1.2458 5 6 3.2730 -1.5221 -0.6768 6 6 2.7747 -1.8445 0.7544 7 1 2.1401 -2.7306 0.7435 8 6 3.9625 -2.0523 1.6961 9 7 3.4707 -2.4073 3.0339 10 6 4.5860 -2.6155 3.9670 11 6 4.0354 -2.9821 5.3465 12 6 5.1971 -3.1982 6.3184 13 6 4.6547 -3.5587 7.6774 14 1 3.5880 -3.6264 7.8325 15 6 5.5202 -3.8011 8.7230 16 7 6.8190 -3.7181 8.5342 17 14 4.8479 -4.2487 10.4074 18 1 3.3640 -4.2761 10.3567 19 1 5.3551 -5.5870 10.8032 20 1 5.2902 -3.2379 11.4013 21 8 2.0159 -0.6927 1.1557 22 1 -0.3634 0.5218 0.8853 23 1 -0.3633 0.5058 -0.8946 24 1 -0.3634 -1.0276 0.0093 25 1 2.3671 -0.0424 -2.0166 26 1 1.3012 -1.4349 -1.6304 27 1 4.1620 -0.8920 -0.6507 28 1 3.4579 -2.4348 -1.2433 29 1 4.5919 -2.8566 1.3151 30 1 4.5446 -1.1326 1.7552 31 1 2.8748 -3.2207 2.9960 32 1 5.2193 -3.4239 3.6015 33 1 5.1727 -1.6998 4.0419 34 1 3.4023 -2.1734 5.7118 35 1 3.4485 -3.8975 5.2720 36 1 5.8306 -4.0068 5.9534 37 1 5.7837 -2.2826 6.3930 38 1 7.4279 -3.8890 9.2697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398141349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = -72.987367 kcal Electronic energy + Delta-G solvation = -15444.853708 eV Core-core repulsion = 12900.119532 eV Total energy + Delta-G solvation = -2544.734176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.73747 -36.29165 -33.64229 -32.38146 -32.12714 -30.66889 -27.75895 -25.63575 -23.43622 -22.06463 -21.62009 -20.78018 -19.90456 -17.06846 -16.40109 -16.03040 -15.28585 -14.57332 -14.41974 -14.18192 -13.90168 -13.59407 -13.28835 -12.90734 -12.31799 -12.14983 -12.06456 -11.85317 -11.56920 -11.33457 -11.08894 -10.98989 -10.92503 -10.79648 -10.51111 -10.39126 -9.62575 -9.53289 -9.26512 -8.97989 -8.29609 -8.03653 -5.94691 -3.96297 3.35083 3.42172 3.47341 3.65983 4.28136 4.33740 4.51907 4.55888 4.77507 4.96904 5.10766 5.17353 5.30696 5.34722 5.39660 5.41178 5.47369 5.54224 5.67621 5.72390 5.88036 5.91738 5.97271 6.04320 6.09451 6.39809 6.79984 6.83953 7.08616 7.21592 7.43744 7.72530 7.75524 7.90634 8.06468 8.50263 9.11273 9.67434 11.16899 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.059409 B = 0.003691 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.197855 B = 7583.254637 C = 7911.516685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 H 0.076 0.924 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.085 3.915 7 H 0.066 0.934 8 C 0.060 3.940 9 N -0.684 5.684 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 O -0.354 6.354 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.336 0.664 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 4.862 -20.882 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.027 3.973 7 H 0.084 0.916 8 C -0.070 4.070 9 N -0.314 5.314 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 O -0.274 6.274 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.598 5.565 -20.384 22.812 hybrid contribution 0.154 -1.185 0.398 1.259 sum -8.444 4.381 -19.986 22.134 Atomic orbital electron populations 1.22133 0.95165 1.02467 1.02110 1.22720 0.94272 0.96467 0.85269 0.90597 1.23184 0.97805 0.99699 0.98176 1.23295 0.98674 1.01131 0.95992 1.22978 0.92387 0.89595 0.92309 0.91579 1.22096 0.94871 1.00722 0.89304 1.60468 1.20941 1.42771 1.07226 1.22131 0.91785 0.99535 0.93444 1.21618 1.00184 0.99951 0.92728 1.19077 0.92718 0.96876 0.92962 1.21317 0.93002 1.46388 0.94800 0.92593 1.25040 0.94865 0.95689 0.99029 1.69981 1.01663 1.50156 1.31907 0.86535 0.79197 0.77963 0.84321 1.19701 1.21087 1.21033 1.88628 1.70258 1.39812 1.28666 0.91804 0.91927 0.92315 0.90258 0.90557 0.90164 0.90058 0.94423 0.90505 0.84706 0.95965 0.91533 0.92481 0.93707 0.96846 0.96568 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.44 37.16 0.35 -1.07 16 2 C 0.07 0.71 4.16 -26.01 -0.11 0.60 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.15 -1.17 6.54 -24.78 -0.16 -1.33 16 5 C -0.15 -1.30 6.57 -24.48 -0.16 -1.46 16 6 C 0.09 0.98 3.62 -25.70 -0.09 0.89 16 7 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 8 C 0.06 0.79 5.40 -3.83 -0.02 0.77 16 9 N -0.68 -10.99 6.48 -113.78 -0.74 -11.73 16 10 C 0.06 1.10 5.68 -3.83 -0.02 1.08 16 11 C -0.11 -2.34 5.41 -26.73 -0.14 -2.48 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 17 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 21 O -0.35 -4.84 10.68 -35.23 -0.38 -5.22 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.53 7.85 -51.93 -0.41 0.13 16 27 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.34 5.03 8.73 -39.29 -0.34 4.68 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -31.87 310.49 -8.68 -40.55 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.05 Total: -2.01 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.91 Total: -16.56 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.00 Total: -38.63 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.38 Total: -5.22 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.87 -8.68 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398141349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds