Wall clock time and date at job start Mon Mar 30 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.89329 * 2 1 4 4 C 1.54378 * 109.82837 * 239.07223 * 2 1 3 5 5 C 1.55309 * 102.25014 * 219.13100 * 4 2 1 6 6 C 1.54944 * 100.94264 * 34.13276 * 5 4 2 7 7 H 1.08994 * 110.31231 * 82.47388 * 6 5 4 8 8 C 1.53001 * 110.31101 * 204.64479 * 6 5 4 9 9 N 1.46892 * 109.47426 * 182.16545 * 8 6 5 10 10 C 1.46899 * 111.00503 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47456 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47059 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99974 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99913 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46887 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47035 * 120.00166 * 17 15 13 20 20 H 1.48495 * 109.46595 * 239.99753 * 17 15 13 21 21 O 1.43236 * 109.82846 * 120.93714 * 2 1 3 22 22 H 1.09002 * 109.47234 * 300.51656 * 1 2 3 23 23 H 1.09002 * 109.47126 * 60.51940 * 1 2 3 24 24 H 1.09002 * 109.47243 * 180.51822 * 1 2 3 25 25 H 1.08997 * 110.85123 * 100.93782 * 4 2 1 26 26 H 1.09007 * 110.84905 * 337.31125 * 4 2 1 27 27 H 1.09000 * 111.12311 * 276.21255 * 5 4 2 28 28 H 1.08999 * 111.16419 * 152.06915 * 5 4 2 29 29 H 1.09008 * 109.46663 * 302.16716 * 8 6 5 30 30 H 1.08999 * 109.47075 * 62.15925 * 8 6 5 31 31 H 1.00902 * 110.99942 * 56.04260 * 9 8 6 32 32 H 1.09003 * 109.46781 * 300.00334 * 10 9 8 33 33 H 1.09000 * 109.46623 * 59.99704 * 10 9 8 34 34 H 1.09003 * 109.47404 * 299.99960 * 11 10 9 35 35 H 1.09000 * 109.47441 * 60.00212 * 11 10 9 36 36 H 1.09003 * 109.47352 * 299.99872 * 12 11 10 37 37 H 1.09000 * 109.47316 * 60.00112 * 12 11 10 38 38 H 0.97004 * 119.99711 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 -1.2458 5 6 3.2730 -1.5221 -0.6768 6 6 2.7747 -1.8445 0.7544 7 1 2.1401 -2.7306 0.7435 8 6 3.9625 -2.0523 1.6961 9 7 3.4707 -2.4073 3.0339 10 6 4.5860 -2.6155 3.9670 11 6 4.0354 -2.9821 5.3465 12 6 5.1971 -3.1982 6.3184 13 6 4.6547 -3.5587 7.6774 14 1 3.5880 -3.6264 7.8325 15 6 5.5202 -3.8011 8.7230 16 7 6.8190 -3.7181 8.5342 17 14 4.8479 -4.2487 10.4074 18 1 3.3640 -4.2761 10.3567 19 1 5.3551 -5.5870 10.8032 20 1 5.2902 -3.2379 11.4013 21 8 2.0159 -0.6927 1.1557 22 1 -0.3634 0.5218 0.8853 23 1 -0.3633 0.5058 -0.8946 24 1 -0.3634 -1.0276 0.0093 25 1 2.3671 -0.0424 -2.0166 26 1 1.3012 -1.4349 -1.6304 27 1 4.1620 -0.8920 -0.6507 28 1 3.4579 -2.4348 -1.2433 29 1 4.5919 -2.8566 1.3151 30 1 4.5446 -1.1326 1.7552 31 1 2.8748 -3.2207 2.9960 32 1 5.2193 -3.4239 3.6015 33 1 5.1727 -1.6998 4.0419 34 1 3.4023 -2.1734 5.7118 35 1 3.4485 -3.8975 5.2720 36 1 5.8306 -4.0068 5.9534 37 1 5.7837 -2.2826 6.3930 38 1 7.4279 -3.8890 9.2697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398141349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:28 Heat of formation + Delta-G solvation = -94.257364 kcal Electronic energy + Delta-G solvation = -15445.776044 eV Core-core repulsion = 12900.119532 eV Total energy + Delta-G solvation = -2545.656513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.56284 -37.70748 -35.54658 -33.66661 -33.13542 -32.04738 -29.10718 -27.19799 -24.74924 -23.52330 -22.50485 -21.94404 -21.33463 -18.49955 -17.89116 -17.19136 -16.56965 -16.44365 -15.65163 -15.33768 -15.06682 -14.65735 -14.29612 -14.25491 -13.80141 -13.60650 -13.24110 -12.89500 -12.81793 -12.64072 -12.56043 -12.48311 -12.28540 -11.90956 -11.70585 -11.66046 -11.53327 -11.35514 -11.04221 -10.56379 -10.39931 -9.31442 -8.20719 -6.31826 1.39751 1.40530 1.54378 2.41045 2.85472 3.12194 3.23014 3.61326 3.88428 3.92259 4.16067 4.21122 4.31192 4.36111 4.44987 4.49886 4.58002 4.66339 4.71239 4.78859 4.90478 4.93024 4.97747 5.05760 5.08350 5.15876 5.23150 5.27841 5.37745 5.51408 5.74035 5.85024 6.03741 6.25711 6.30242 6.51849 6.84935 7.37362 8.91558 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.059409 B = 0.003691 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.197855 B = 7583.254637 C = 7911.516685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.059 3.941 3 H 0.075 0.925 4 C -0.142 4.142 5 C -0.147 4.147 6 C 0.082 3.918 7 H 0.070 0.930 8 C 0.060 3.940 9 N -0.692 5.692 10 C 0.073 3.927 11 C -0.093 4.093 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.277 1.277 21 O -0.391 6.391 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.343 0.657 32 H 0.027 0.973 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.051 0.949 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 4.519 -21.887 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 H 0.093 0.907 4 C -0.180 4.180 5 C -0.185 4.185 6 C 0.025 3.975 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.323 5.323 10 C -0.056 4.056 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.203 1.203 21 O -0.311 6.311 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.642 5.225 -21.413 24.058 hybrid contribution 0.486 -1.045 0.683 1.340 sum -9.156 4.180 -20.730 23.044 Atomic orbital electron populations 1.22115 0.94466 1.02384 1.02572 1.22947 0.94930 0.96501 0.85467 0.90688 1.23170 0.97508 0.99883 0.97404 1.23286 0.98932 1.02159 0.94112 1.23037 0.91676 0.89356 0.93473 0.91221 1.22171 0.95977 1.00688 0.88114 1.60383 1.20173 1.43168 1.08619 1.21824 0.92323 0.99148 0.92280 1.21377 0.98121 0.99959 0.93613 1.18976 0.93807 0.94721 0.93741 1.21733 0.93351 1.46905 0.96188 0.92336 1.26018 0.95103 0.95281 1.03590 1.70105 1.03089 1.50727 1.33510 0.85356 0.78887 0.77938 0.78611 1.18670 1.20118 1.20284 1.88586 1.70793 1.40667 1.31036 0.93226 0.89626 0.92585 0.88357 0.89497 0.90128 0.88114 0.92754 0.91501 0.83920 0.95496 0.92420 0.93345 0.92997 0.98840 0.99122 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.44 71.98 0.68 -1.90 16 2 C 0.06 1.10 4.16 31.06 0.13 1.23 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -1.82 6.54 31.86 0.21 -1.61 16 5 C -0.15 -2.15 6.57 32.05 0.21 -1.94 16 6 C 0.08 1.78 3.62 31.26 0.11 1.89 16 7 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.06 1.51 5.40 86.31 0.47 1.98 16 9 N -0.69 -21.86 6.48 -513.90 -3.33 -25.19 16 10 C 0.07 2.71 5.68 86.30 0.49 3.20 16 11 C -0.09 -4.11 5.41 30.59 0.17 -3.94 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -32.31 9.11 25.60 0.23 -32.07 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 16 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 17 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 O -0.39 -10.43 10.68 -148.98 -1.59 -12.02 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.94 7.85 -2.38 -0.02 0.93 16 27 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.34 9.95 8.73 -89.69 -0.78 9.16 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -68.60 310.49 0.91 -67.69 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.22 Total: 11.28 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.31 Total: -31.30 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.05 Total: -83.15 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.59 Total: -12.02 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.60 0.91 -67.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398141349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.570 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds