Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.45803 * 2 1 4 4 C 1.53040 * 109.46264 * 119.97405 * 2 1 3 5 5 C 1.53114 * 109.28082 * 179.19313 * 4 2 1 6 6 C 1.53123 * 109.16051 * 302.34639 * 5 4 2 7 7 H 1.08997 * 109.50652 * 177.63067 * 6 5 4 8 8 O 1.42902 * 109.50171 * 297.71125 * 6 5 4 9 9 C 1.42895 * 114.00165 * 209.99708 * 8 6 5 10 10 C 1.53000 * 109.47298 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47355 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53040 * 109.27979 * 57.64789 * 6 5 4 21 21 N 1.46845 * 109.45720 * 240.02220 * 2 1 3 22 22 H 1.09005 * 109.46619 * 300.02743 * 1 2 3 23 23 H 1.08997 * 109.47292 * 60.02290 * 1 2 3 24 24 H 1.08999 * 109.47799 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.50284 * 59.24921 * 4 2 1 26 26 H 1.08998 * 109.53548 * 299.15218 * 4 2 1 27 27 H 1.08992 * 109.52842 * 182.43970 * 5 4 2 28 28 H 1.08998 * 109.57731 * 62.27697 * 5 4 2 29 29 H 1.09002 * 109.46850 * 60.00271 * 9 8 6 30 30 H 1.08992 * 109.47626 * 300.00230 * 9 8 6 31 31 H 1.09002 * 109.46807 * 60.00418 * 10 9 8 32 32 H 1.08998 * 109.47285 * 300.00021 * 10 9 8 33 33 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 34 34 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.45831 * 60.84279 * 20 6 5 37 37 H 1.09000 * 109.46309 * 180.80736 * 20 6 5 38 38 H 1.00895 * 111.00493 * 302.33933 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5709 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0467 7 1 5.1439 -1.3954 -0.0829 8 8 3.6059 -2.7755 -0.0634 9 6 4.4749 -3.6667 -0.7653 10 6 3.8989 -5.0833 -0.7182 11 6 4.8297 -6.0376 -1.4691 12 6 4.2620 -7.4328 -1.4233 13 1 3.3303 -7.6201 -0.9102 14 6 4.9321 -8.4702 -2.0363 15 7 6.0664 -8.2420 -2.6615 16 14 4.2288 -10.1998 -1.9788 17 1 5.1321 -11.1260 -2.7078 18 1 4.1062 -10.6376 -0.5652 19 1 2.8886 -10.2106 -2.6184 20 6 3.4864 -0.6779 -1.2591 21 7 2.0191 -0.6918 -1.1994 22 1 -0.3633 0.5143 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 -0.3635 -1.0276 0.0005 25 1 1.6658 -1.7447 1.2576 26 1 1.6896 -0.1988 2.1403 27 1 3.9379 -1.2863 2.1019 28 1 3.9466 0.2865 1.2677 29 1 5.4588 -3.6591 -0.2962 30 1 4.5646 -3.3448 -1.8027 31 1 2.9149 -5.0911 -1.1869 32 1 3.8097 -5.4050 0.3194 33 1 5.8136 -6.0296 -1.0000 34 1 4.9194 -5.7160 -2.5068 35 1 6.5380 -8.9719 -3.0925 36 1 3.8403 0.3531 -1.2533 37 1 3.8173 -1.1701 -2.1736 38 1 1.6645 -1.6354 -1.2425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399396870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -78.889127 kcal Electronic energy + Delta-G solvation = -16005.050625 eV Core-core repulsion = 13460.060529 eV Total energy + Delta-G solvation = -2544.990096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54358 -36.72947 -33.89253 -32.11977 -31.65417 -30.96858 -26.97068 -26.37954 -23.56301 -22.88175 -21.55507 -20.32715 -20.00362 -16.60599 -15.98837 -15.75704 -15.64247 -14.88249 -14.58199 -14.44511 -13.85850 -13.49851 -13.17396 -12.71419 -12.26111 -12.12263 -11.86954 -11.81378 -11.53605 -11.37196 -11.12967 -10.91803 -10.80929 -10.62635 -10.47968 -10.26303 -9.92282 -9.43791 -9.36523 -9.11727 -8.35339 -8.19536 -6.00762 -4.03107 3.34179 3.38066 3.40952 3.90102 4.29465 4.47106 4.75675 4.76529 4.91713 4.99347 5.24597 5.29654 5.35190 5.41278 5.58770 5.62704 5.69469 5.72939 5.77750 5.82158 5.85129 6.00482 6.05824 6.11957 6.19238 6.26699 6.67782 6.71363 7.04173 7.08640 7.44152 7.58790 7.66146 7.78076 7.98547 8.41491 9.03258 9.60926 11.10777 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045893 B = 0.004545 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.962706 B = 6159.403681 C = 6368.279385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.114 4.114 6 C 0.048 3.952 7 H 0.060 0.940 8 O -0.382 6.382 9 C 0.063 3.937 10 C -0.106 4.106 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.038 3.962 21 N -0.676 5.676 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 17.069 5.856 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.187 4.187 5 C -0.152 4.152 6 C -0.012 4.012 7 H 0.078 0.922 8 O -0.302 6.302 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.092 4.092 21 N -0.306 5.306 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.257 17.470 5.416 19.331 hybrid contribution 0.333 -1.591 0.584 1.727 sum -5.924 15.879 6.000 17.979 Atomic orbital electron populations 1.21788 0.94531 1.02176 1.01691 1.21557 0.95170 0.97825 0.88264 0.90749 1.22212 0.95586 1.02066 0.98882 1.21624 0.96488 0.99814 0.97248 1.22760 0.98221 0.84047 0.96165 0.92204 1.87906 1.49522 1.16478 1.76266 1.22823 0.92716 0.91027 0.94770 1.21636 1.00508 0.90889 1.01362 1.19039 0.94211 0.92952 0.95111 1.21179 1.07557 0.92874 1.34245 0.92616 1.25024 0.94937 0.99178 0.95298 1.69956 1.15674 1.32306 1.35652 0.86625 0.78924 0.84085 0.78187 1.21268 1.20217 1.20184 1.22454 0.88695 1.00219 0.97853 1.60765 1.08050 1.23356 1.38457 0.92436 0.92026 0.92560 0.90856 0.91980 0.91367 0.91207 0.93973 0.93879 0.92644 0.92749 0.96569 0.96498 0.92919 0.90647 0.90432 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.47 37.16 0.35 -1.00 16 2 C 0.08 0.86 3.03 -67.72 -0.21 0.66 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.61 5.20 -26.65 -0.14 -1.75 16 5 C -0.11 -1.27 5.73 -26.61 -0.15 -1.43 16 6 C 0.05 0.62 2.95 -26.65 -0.08 0.54 16 7 H 0.06 0.75 7.79 -51.93 -0.40 0.34 16 8 O -0.38 -6.22 8.93 -35.23 -0.31 -6.53 16 9 C 0.06 1.12 5.75 37.16 0.21 1.34 16 10 C -0.11 -2.28 5.52 -26.73 -0.15 -2.43 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.04 0.46 6.24 -3.83 -0.02 0.43 16 21 N -0.68 -8.30 6.49 -106.76 -0.69 -9.00 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.94 7.80 -51.93 -0.40 0.54 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.98 7.88 -51.93 -0.41 0.58 16 38 H 0.35 4.73 8.32 -39.29 -0.33 4.41 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -29.79 304.50 -8.42 -38.21 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.99 Total: -0.83 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.73 Total: -16.88 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.04 Total: -35.39 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.31 Total: -6.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.79 -8.42 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399396870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.679 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds