Wall clock time and date at job start Mon Mar 30 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.45803 * 2 1 4 4 C 1.53040 * 109.46264 * 119.97405 * 2 1 3 5 5 C 1.53114 * 109.28082 * 179.19313 * 4 2 1 6 6 C 1.53123 * 109.16051 * 302.34639 * 5 4 2 7 7 H 1.08997 * 109.50652 * 177.63067 * 6 5 4 8 8 O 1.42902 * 109.50171 * 297.71125 * 6 5 4 9 9 C 1.42895 * 114.00165 * 209.99708 * 8 6 5 10 10 C 1.53000 * 109.47298 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47355 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53040 * 109.27979 * 57.64789 * 6 5 4 21 21 N 1.46845 * 109.45720 * 240.02220 * 2 1 3 22 22 H 1.09005 * 109.46619 * 300.02743 * 1 2 3 23 23 H 1.08997 * 109.47292 * 60.02290 * 1 2 3 24 24 H 1.08999 * 109.47799 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.50284 * 59.24921 * 4 2 1 26 26 H 1.08998 * 109.53548 * 299.15218 * 4 2 1 27 27 H 1.08992 * 109.52842 * 182.43970 * 5 4 2 28 28 H 1.08998 * 109.57731 * 62.27697 * 5 4 2 29 29 H 1.09002 * 109.46850 * 60.00271 * 9 8 6 30 30 H 1.08992 * 109.47626 * 300.00230 * 9 8 6 31 31 H 1.09002 * 109.46807 * 60.00418 * 10 9 8 32 32 H 1.08998 * 109.47285 * 300.00021 * 10 9 8 33 33 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 34 34 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.45831 * 60.84279 * 20 6 5 37 37 H 1.09000 * 109.46309 * 180.80736 * 20 6 5 38 38 H 1.00895 * 111.00493 * 302.33933 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5709 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0467 7 1 5.1439 -1.3954 -0.0829 8 8 3.6059 -2.7755 -0.0634 9 6 4.4749 -3.6667 -0.7653 10 6 3.8989 -5.0833 -0.7182 11 6 4.8297 -6.0376 -1.4691 12 6 4.2620 -7.4328 -1.4233 13 1 3.3303 -7.6201 -0.9102 14 6 4.9321 -8.4702 -2.0363 15 7 6.0664 -8.2420 -2.6615 16 14 4.2288 -10.1998 -1.9788 17 1 5.1321 -11.1260 -2.7078 18 1 4.1062 -10.6376 -0.5652 19 1 2.8886 -10.2106 -2.6184 20 6 3.4864 -0.6779 -1.2591 21 7 2.0191 -0.6918 -1.1994 22 1 -0.3633 0.5143 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 -0.3635 -1.0276 0.0005 25 1 1.6658 -1.7447 1.2576 26 1 1.6896 -0.1988 2.1403 27 1 3.9379 -1.2863 2.1019 28 1 3.9466 0.2865 1.2677 29 1 5.4588 -3.6591 -0.2962 30 1 4.5646 -3.3448 -1.8027 31 1 2.9149 -5.0911 -1.1869 32 1 3.8097 -5.4050 0.3194 33 1 5.8136 -6.0296 -1.0000 34 1 4.9194 -5.7160 -2.5068 35 1 6.5380 -8.9719 -3.0925 36 1 3.8403 0.3531 -1.2533 37 1 3.8173 -1.1701 -2.1736 38 1 1.6645 -1.6354 -1.2425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399396870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:40 Heat of formation + Delta-G solvation = -97.907387 kcal Electronic energy + Delta-G solvation = -16005.875318 eV Core-core repulsion = 13460.060529 eV Total energy + Delta-G solvation = -2545.814790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.56861 -37.94452 -35.83186 -33.73514 -32.55457 -32.35063 -28.62391 -27.54048 -25.01213 -24.25966 -22.48248 -22.01570 -21.09642 -18.58615 -17.37941 -17.02607 -16.67919 -16.47020 -15.82587 -15.70856 -15.15464 -14.61524 -14.35848 -14.06640 -13.89356 -13.62927 -13.19264 -12.86856 -12.74806 -12.70832 -12.51238 -12.37151 -12.04555 -11.99898 -11.83274 -11.64813 -11.51622 -11.27580 -11.18830 -10.70421 -10.56929 -9.15776 -8.22354 -6.33661 1.39901 1.43131 1.51168 2.39192 2.70867 3.11043 3.37344 3.82465 3.89355 3.99690 4.05532 4.17529 4.26036 4.38882 4.48892 4.54100 4.57269 4.67656 4.80209 4.86337 4.90186 4.93720 4.97224 5.00762 5.11577 5.15410 5.19327 5.36349 5.39587 5.47437 5.67632 5.80660 6.09577 6.20571 6.37711 6.44059 6.81779 7.35621 8.89558 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045893 B = 0.004545 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.962706 B = 6159.403681 C = 6368.279385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.087 0.913 4 C -0.144 4.144 5 C -0.112 4.112 6 C 0.040 3.960 7 H 0.065 0.935 8 O -0.392 6.392 9 C 0.076 3.924 10 C -0.094 4.094 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.281 1.281 18 H -0.267 1.267 19 H -0.267 1.267 20 C 0.041 3.959 21 N -0.684 5.684 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.051 0.949 33 H -0.005 1.005 34 H -0.004 1.004 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 17.835 6.578 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 H 0.105 0.895 4 C -0.184 4.184 5 C -0.150 4.150 6 C -0.019 4.019 7 H 0.084 0.916 8 O -0.312 6.312 9 C 0.000 4.000 10 C -0.132 4.132 11 C -0.009 4.009 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.206 1.206 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.090 4.090 21 N -0.313 5.313 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.069 18.262 6.150 20.525 hybrid contribution 0.590 -1.755 0.368 1.888 sum -6.479 16.507 6.517 18.893 Atomic orbital electron populations 1.21768 0.93764 1.01775 1.02541 1.21649 0.95833 0.98013 0.87309 0.89491 1.22172 0.95370 1.00891 0.99927 1.21661 0.96672 1.00819 0.95810 1.23039 0.98780 0.82327 0.97750 0.91646 1.87874 1.49331 1.18067 1.75950 1.22460 0.92602 0.89616 0.95325 1.21362 0.99331 0.92292 1.00174 1.18915 0.94157 0.93548 0.94277 1.21619 1.07951 0.94330 1.34584 0.92314 1.25976 0.95182 1.03867 0.94621 1.70082 1.16983 1.33852 1.36315 0.85479 0.78419 0.78353 0.78681 1.20591 1.19190 1.19169 1.22456 0.88627 1.01050 0.96838 1.60817 1.08132 1.22713 1.39602 0.90716 0.92040 0.93587 0.93322 0.90128 0.91967 0.88684 0.93735 0.93558 0.92812 0.93064 0.98646 0.98550 0.92631 0.88600 0.91556 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.47 71.98 0.68 -1.71 16 2 C 0.08 1.55 3.03 44.94 0.14 1.69 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.14 -2.87 5.20 30.65 0.16 -2.71 16 5 C -0.11 -2.26 5.73 30.67 0.18 -2.09 16 6 C 0.04 0.98 2.95 30.65 0.09 1.07 16 7 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16 8 O -0.39 -12.57 8.93 -148.98 -1.33 -13.90 16 9 C 0.08 2.74 5.75 71.98 0.41 3.16 16 10 C -0.09 -4.09 5.52 30.59 0.17 -3.92 16 11 C 0.03 1.52 4.97 29.85 0.15 1.67 16 12 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.04 0.91 6.24 86.33 0.54 1.45 16 21 N -0.68 -15.96 6.49 -491.67 -3.19 -19.16 16 22 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 1.21 7.80 -2.39 -0.02 1.19 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 30 H 0.05 1.62 7.87 -2.39 -0.02 1.60 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.64 7.88 -2.39 -0.02 1.62 16 38 H 0.34 9.07 8.32 -89.70 -0.75 8.33 16 Total: -1.00 -63.45 304.50 1.25 -62.20 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.25 Total: 13.42 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 3.21 Total: -32.44 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -2.91 Total: -75.97 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.33 Total: -13.90 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.45 1.25 -62.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399396870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.709 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds