Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.45351 * 2 1 4 4 C 1.53040 * 109.45898 * 240.02702 * 2 1 3 5 5 C 1.53120 * 109.27757 * 180.80390 * 4 2 1 6 6 C 1.53120 * 109.15835 * 57.65195 * 5 4 2 7 7 H 1.09002 * 109.50357 * 62.28890 * 6 5 4 8 8 O 1.42907 * 109.50334 * 182.40220 * 6 5 4 9 9 C 1.53041 * 109.28215 * 302.34563 * 6 5 4 10 10 N 1.46839 * 109.46389 * 119.97260 * 2 1 3 11 11 C 1.46901 * 111.00234 * 305.85476 * 10 2 1 12 12 C 1.53000 * 109.46769 * 301.83737 * 11 10 2 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 H 1.09004 * 109.47309 * 300.02625 * 1 2 3 23 23 H 1.09002 * 109.47615 * 60.02674 * 1 2 3 24 24 H 1.08993 * 109.47420 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.50255 * 60.86452 * 4 2 1 26 26 H 1.08998 * 109.53691 * 300.76086 * 4 2 1 27 27 H 1.08994 * 109.52534 * 297.75273 * 5 4 2 28 28 H 1.09001 * 109.57639 * 177.58826 * 5 4 2 29 29 H 0.96701 * 114.00272 * 299.80607 * 8 6 5 30 30 H 1.09002 * 109.45916 * 299.16269 * 9 6 5 31 31 H 1.09003 * 109.45322 * 179.19246 * 9 6 5 32 32 H 1.09002 * 109.47401 * 181.83444 * 11 10 2 33 33 H 1.09001 * 109.46874 * 61.83457 * 11 10 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 38 38 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7361 -1.2357 6 6 4.0547 -1.4188 0.0466 7 1 3.7124 -2.4536 0.0594 8 8 5.4826 -1.3873 0.0944 9 6 3.4864 -0.6777 1.2590 10 7 2.0192 -0.6917 1.1993 11 6 1.4373 -0.1105 2.4165 12 6 1.7845 1.3779 2.4873 13 6 1.1789 1.9831 3.7553 14 6 1.5214 3.4490 3.8254 15 1 2.1122 3.9035 3.0438 16 6 1.0804 4.2100 4.8872 17 7 1.3797 5.4892 4.9485 18 14 0.0579 3.4242 6.2386 19 1 0.9563 2.9085 7.3027 20 1 -0.8624 4.4369 6.8154 21 1 -0.7331 2.3024 5.6719 22 1 -0.3634 0.5143 0.8898 23 1 -0.3634 0.5134 -0.8902 24 1 -0.3634 -1.0276 0.0005 25 1 1.6893 -0.1981 -2.1400 26 1 1.6658 -1.7447 -1.2583 27 1 3.9456 0.2869 -1.2673 28 1 3.9387 -1.2857 -2.1021 29 1 5.9110 -1.8394 -0.6454 30 1 3.8404 0.3533 1.2531 31 1 3.8175 -1.1700 2.1734 32 1 1.8413 -0.6199 3.2914 33 1 0.3541 -0.2303 2.3943 34 1 2.8677 1.4977 2.5095 35 1 1.3805 1.8872 1.6124 36 1 0.0957 1.8634 3.7336 37 1 1.5833 1.4737 4.6300 38 1 1.0691 6.0246 5.6954 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399504029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = -67.210105 kcal Electronic energy + Delta-G solvation = -16478.739258 eV Core-core repulsion = 13934.255602 eV Total energy + Delta-G solvation = -2544.483656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.66949 -36.80269 -34.32348 -32.73533 -31.52273 -30.86017 -27.27315 -26.13369 -24.05868 -22.37810 -21.20191 -20.65779 -18.87338 -17.34214 -16.63828 -15.91266 -15.24134 -14.76777 -14.44350 -14.09013 -13.77637 -13.32313 -13.27459 -12.73241 -12.55507 -12.37938 -11.90808 -11.75266 -11.47749 -11.29394 -11.14986 -10.97022 -10.80311 -10.56114 -10.22825 -9.95213 -9.87350 -9.75049 -9.63155 -9.21126 -8.52578 -7.93320 -6.03107 -4.01031 3.31633 3.38742 3.42505 3.76575 4.46260 4.50690 4.68918 4.80835 4.91022 5.15365 5.30766 5.35779 5.45363 5.56658 5.60123 5.64494 5.78432 5.83141 5.85878 5.90026 6.00496 6.02572 6.12778 6.14497 6.27942 6.38367 6.50972 6.65452 6.88524 7.27576 7.29922 7.33551 7.45067 7.58155 7.80910 8.55736 9.01684 9.59514 11.10526 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.006031 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.761897 B = 4641.381934 C = 4892.484394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.154 4.154 6 C 0.108 3.892 7 H 0.061 0.939 8 O -0.568 6.568 9 C 0.060 3.940 10 N -0.531 5.531 11 C 0.049 3.951 12 C -0.138 4.138 13 C -0.010 4.010 14 C -0.520 4.520 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.376 0.624 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -15.258 -11.961 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.191 4.191 6 C 0.049 3.951 7 H 0.079 0.921 8 O -0.373 6.373 9 C -0.068 4.068 10 N -0.256 5.256 11 C -0.078 4.078 12 C -0.177 4.177 13 C -0.048 4.048 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.327 -15.261 -11.341 19.060 hybrid contribution -0.111 0.379 0.307 0.501 sum 1.215 -14.882 -11.034 18.566 Atomic orbital electron populations 1.21898 0.94233 1.02119 1.02295 1.21657 0.95636 0.96298 0.89903 0.93146 1.21564 0.94334 1.01396 0.97260 1.22326 0.96973 1.01955 0.97894 1.21766 0.79954 0.98667 0.94703 0.92126 1.86499 1.19081 1.80484 1.51235 1.21857 0.87875 0.99785 0.97329 1.62141 1.05817 1.54813 1.02840 1.22398 1.00030 0.94530 0.90819 1.22076 1.00787 0.94295 1.00558 1.19493 0.95783 0.96660 0.92856 1.21159 1.33815 0.92297 1.08508 0.91287 1.25051 0.95832 0.94713 0.97996 1.69926 1.46526 1.06244 1.31712 0.86757 0.80707 0.79349 0.82347 1.20305 1.21419 1.18982 0.91528 0.92497 0.92190 0.91413 0.91232 0.91297 0.91910 0.77741 0.93400 0.90257 0.91130 0.90414 0.92825 0.92537 0.96662 0.97107 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.68 37.16 0.32 -1.54 16 2 C 0.07 0.99 1.84 -67.73 -0.12 0.87 16 3 H 0.05 0.78 6.61 -51.93 -0.34 0.44 16 4 C -0.11 -1.18 5.37 -26.65 -0.14 -1.32 16 5 C -0.15 -1.65 5.63 -26.61 -0.15 -1.80 16 6 C 0.11 1.30 3.63 -26.65 -0.10 1.20 16 7 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 8 O -0.57 -6.77 13.32 -35.23 -0.47 -7.24 16 9 C 0.06 0.88 4.70 -3.83 -0.02 0.86 16 10 N -0.53 -7.75 4.69 -226.69 -1.06 -8.82 16 11 C 0.05 0.81 4.79 -3.82 -0.02 0.79 16 12 C -0.14 -2.78 4.35 -26.73 -0.12 -2.89 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 18 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 22 H 0.07 0.94 6.07 -51.93 -0.32 0.63 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.38 2.66 9.08 45.56 0.41 3.07 16 30 H 0.05 0.80 6.76 -51.93 -0.35 0.45 16 31 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.08 1.24 6.32 -51.93 -0.33 0.91 16 34 H 0.05 1.12 6.68 -51.93 -0.35 0.78 16 35 H 0.06 1.15 6.23 -51.93 -0.32 0.83 16 36 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 37 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -31.86 290.31 -7.68 -39.54 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.74 Total: 0.25 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.89 Total: -17.85 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.29 Total: -36.47 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.47 Total: -7.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.86 -7.68 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399504029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.665 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds