Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.45351 * 2 1 4 4 C 1.53040 * 109.45898 * 240.02702 * 2 1 3 5 5 C 1.53120 * 109.27757 * 180.80390 * 4 2 1 6 6 C 1.53120 * 109.15835 * 57.65195 * 5 4 2 7 7 H 1.09002 * 109.50357 * 62.28890 * 6 5 4 8 8 O 1.42907 * 109.50334 * 182.40220 * 6 5 4 9 9 C 1.53041 * 109.28215 * 302.34563 * 6 5 4 10 10 N 1.46839 * 109.46389 * 119.97260 * 2 1 3 11 11 C 1.46901 * 111.00234 * 305.85476 * 10 2 1 12 12 C 1.53000 * 109.46769 * 301.83737 * 11 10 2 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 H 1.09004 * 109.47309 * 300.02625 * 1 2 3 23 23 H 1.09002 * 109.47615 * 60.02674 * 1 2 3 24 24 H 1.08993 * 109.47420 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.50255 * 60.86452 * 4 2 1 26 26 H 1.08998 * 109.53691 * 300.76086 * 4 2 1 27 27 H 1.08994 * 109.52534 * 297.75273 * 5 4 2 28 28 H 1.09001 * 109.57639 * 177.58826 * 5 4 2 29 29 H 0.96701 * 114.00272 * 299.80607 * 8 6 5 30 30 H 1.09002 * 109.45916 * 299.16269 * 9 6 5 31 31 H 1.09003 * 109.45322 * 179.19246 * 9 6 5 32 32 H 1.09002 * 109.47401 * 181.83444 * 11 10 2 33 33 H 1.09001 * 109.46874 * 61.83457 * 11 10 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 38 38 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5708 -0.7361 -1.2357 6 6 4.0547 -1.4188 0.0466 7 1 3.7124 -2.4536 0.0594 8 8 5.4826 -1.3873 0.0944 9 6 3.4864 -0.6777 1.2590 10 7 2.0192 -0.6917 1.1993 11 6 1.4373 -0.1105 2.4165 12 6 1.7845 1.3779 2.4873 13 6 1.1789 1.9831 3.7553 14 6 1.5214 3.4490 3.8254 15 1 2.1122 3.9035 3.0438 16 6 1.0804 4.2100 4.8872 17 7 1.3797 5.4892 4.9485 18 14 0.0579 3.4242 6.2386 19 1 0.9563 2.9085 7.3027 20 1 -0.8624 4.4369 6.8154 21 1 -0.7331 2.3024 5.6719 22 1 -0.3634 0.5143 0.8898 23 1 -0.3634 0.5134 -0.8902 24 1 -0.3634 -1.0276 0.0005 25 1 1.6893 -0.1981 -2.1400 26 1 1.6658 -1.7447 -1.2583 27 1 3.9456 0.2869 -1.2673 28 1 3.9387 -1.2857 -2.1021 29 1 5.9110 -1.8394 -0.6454 30 1 3.8404 0.3533 1.2531 31 1 3.8175 -1.1700 2.1734 32 1 1.8413 -0.6199 3.2914 33 1 0.3541 -0.2303 2.3943 34 1 2.8677 1.4977 2.5095 35 1 1.3805 1.8872 1.6124 36 1 0.0957 1.8634 3.7336 37 1 1.5833 1.4737 4.6300 38 1 1.0691 6.0246 5.6954 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399504029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = -91.405610 kcal Electronic energy + Delta-G solvation = -16479.788453 eV Core-core repulsion = 13934.255602 eV Total energy + Delta-G solvation = -2545.532851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77230 -37.85167 -35.92561 -34.47657 -32.75368 -32.37114 -28.81815 -27.36816 -25.47602 -23.63085 -22.61075 -22.08494 -20.10081 -18.93996 -18.19804 -17.06736 -16.55583 -16.21904 -15.85797 -15.46799 -15.10365 -14.68881 -14.60433 -14.24317 -13.91725 -13.67024 -13.30416 -13.03141 -12.83284 -12.73011 -12.41848 -12.31632 -12.08951 -11.84226 -11.75094 -11.61632 -11.42988 -11.29962 -11.16811 -10.79607 -10.74872 -9.24535 -8.32768 -6.37938 1.34365 1.36469 1.49012 2.34170 2.70175 3.02440 3.55052 3.74379 3.86106 3.94089 4.09608 4.20417 4.28386 4.34712 4.43928 4.52866 4.64027 4.70905 4.74450 4.84564 4.90102 4.91893 4.99244 5.03702 5.04868 5.13912 5.17672 5.28476 5.41189 5.51407 5.52329 5.62666 6.05437 6.14615 6.25493 6.69696 6.91254 7.26924 8.84479 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.006031 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.761897 B = 4641.381934 C = 4892.484394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.021 0.979 4 C -0.102 4.102 5 C -0.150 4.150 6 C 0.114 3.886 7 H 0.077 0.923 8 O -0.587 6.587 9 C 0.055 3.945 10 N -0.519 5.519 11 C 0.058 3.942 12 C -0.125 4.125 13 C -0.006 4.006 14 C -0.537 4.537 15 H 0.022 0.978 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.956 3.044 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.242 1.242 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.398 0.602 30 H 0.016 0.984 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -18.076 -12.337 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 H 0.039 0.961 4 C -0.139 4.139 5 C -0.188 4.188 6 C 0.055 3.945 7 H 0.095 0.905 8 O -0.396 6.396 9 C -0.073 4.073 10 N -0.243 5.243 11 C -0.070 4.070 12 C -0.164 4.164 13 C -0.044 4.044 14 C -0.575 4.575 15 H 0.040 0.960 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.165 1.165 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.248 0.752 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.205 -18.103 -11.755 21.586 hybrid contribution 0.342 1.344 0.347 1.430 sum 0.548 -16.759 -11.408 20.281 Atomic orbital electron populations 1.21874 0.93253 1.02968 1.02070 1.21797 0.96497 0.95091 0.90757 0.96142 1.21552 0.94330 1.01936 0.96125 1.22307 0.96886 1.01139 0.98431 1.21665 0.80118 0.98972 0.93711 0.90541 1.86450 1.19107 1.81150 1.52851 1.21909 0.88041 0.98396 0.98959 1.62234 1.05671 1.53940 1.02488 1.22286 1.00958 0.91479 0.92232 1.21910 0.99146 0.97069 0.98307 1.19440 0.96482 0.93515 0.94974 1.21513 1.33338 0.95140 1.07502 0.95992 1.26116 0.97247 0.95161 1.01011 1.70089 1.48149 1.08173 1.33018 0.85567 0.79027 0.78976 0.78541 1.19129 1.20789 1.16501 0.93477 0.91097 0.90661 0.89875 0.89738 0.93278 0.88796 0.75210 0.96528 0.90782 0.90547 0.89169 0.94744 0.93554 0.95675 0.96292 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.68 71.98 0.63 -2.75 16 2 C 0.07 1.74 1.84 44.94 0.08 1.82 16 3 H 0.02 0.66 6.61 -2.39 -0.02 0.64 16 4 C -0.10 -1.96 5.37 30.65 0.16 -1.79 16 5 C -0.15 -2.89 5.63 30.67 0.17 -2.72 16 6 C 0.11 2.54 3.63 30.65 0.11 2.65 16 7 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 8 O -0.59 -13.12 13.32 -148.98 -1.98 -15.10 16 9 C 0.06 1.61 4.70 86.33 0.41 2.02 16 10 N -0.52 -14.59 4.69 -871.11 -4.09 -18.68 16 11 C 0.06 1.86 4.79 86.30 0.41 2.27 16 12 C -0.13 -5.15 4.35 30.59 0.13 -5.02 16 13 C -0.01 -0.30 4.04 29.85 0.12 -0.17 16 14 C -0.54 -32.42 9.66 25.60 0.25 -32.17 16 15 H 0.02 1.47 7.99 -2.91 -0.02 1.45 16 16 C 0.00 0.06 5.47 84.65 0.46 0.53 16 17 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 18 Si 0.96 45.12 27.47 68.60 1.88 47.00 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 22 H 0.05 1.28 6.07 -2.38 -0.01 1.26 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.40 4.69 9.08 -74.06 -0.67 4.02 16 30 H 0.02 0.58 6.76 -2.39 -0.02 0.56 16 31 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 32 H 0.08 2.37 8.06 -2.39 -0.02 2.35 16 33 H 0.09 2.70 6.32 -2.39 -0.02 2.68 16 34 H 0.03 1.52 6.68 -2.39 -0.02 1.50 16 35 H 0.05 1.97 6.23 -2.39 -0.01 1.95 16 36 H 0.02 1.16 7.20 -2.39 -0.02 1.15 16 37 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -70.86 290.31 -0.65 -71.51 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.30 Total: 11.95 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 2.94 Total: -35.33 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -3.79 Total: -80.03 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.98 Total: -15.10 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -70.86 -0.65 -71.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399504029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.893 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds