Wall clock time and date at job start Mon Mar 30 2020 03:15:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.87039 * 2 1
4 4 C 1.54104 * 109.88136 * 121.00881 * 2 1 3
5 5 C 1.54805 * 104.18715 * 121.60340 * 4 2 1
6 6 H 1.09008 * 110.90524 * 262.68042 * 5 4 2
7 7 N 1.46904 * 110.90536 * 139.11733 * 5 4 2
8 8 C 1.46892 * 111.00168 * 56.04102 * 7 5 4
9 9 C 1.46902 * 110.99924 * 179.97438 * 7 5 4
10 10 C 1.52996 * 109.47110 * 169.99713 * 9 7 5
11 11 C 1.52998 * 109.47164 * 179.97438 * 10 9 7
12 12 C 1.50695 * 109.47314 * 180.02562 * 11 10 9
13 13 H 1.07994 * 120.00124 * 359.97438 * 12 11 10
14 14 C 1.37877 * 120.00354 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11
16 16 Si 1.86798 * 120.00483 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.46965 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.47123 * 119.99742 * 16 14 12
19 19 H 1.48497 * 109.47676 * 240.00264 * 16 14 12
20 20 C 1.54993 * 102.09764 * 20.87963 * 5 4 2
21 21 O 1.43741 * 110.00290 * 238.91266 * 2 1 3
22 22 H 1.09003 * 109.46790 * 299.29523 * 1 2 3
23 23 H 1.08999 * 109.47529 * 59.29844 * 1 2 3
24 24 H 1.08998 * 109.47103 * 179.30219 * 1 2 3
25 25 H 1.09004 * 110.48326 * 240.27942 * 4 2 1
26 26 H 1.09003 * 110.48376 * 2.92383 * 4 2 1
27 27 H 1.09006 * 109.47181 * 60.00062 * 8 7 5
28 28 H 1.09001 * 109.47088 * 179.97438 * 8 7 5
29 29 H 1.08997 * 109.47635 * 299.99921 * 8 7 5
30 30 H 1.09004 * 109.47218 * 290.00113 * 9 7 5
31 31 H 1.09003 * 109.47019 * 49.99477 * 9 7 5
32 32 H 1.08997 * 109.47185 * 299.99441 * 10 9 7
33 33 H 1.08995 * 109.47063 * 59.99930 * 10 9 7
34 34 H 1.09004 * 109.47276 * 299.99893 * 11 10 9
35 35 H 1.09008 * 109.47317 * 60.00008 * 11 10 9
36 36 H 0.96994 * 120.00338 * 180.02562 * 15 14 12
37 37 H 1.09000 * 110.61715 * 81.47543 * 20 5 4
38 38 H 1.08999 * 110.61939 * 204.47512 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7466 1.2421
5 6 2.9227 -1.8882 0.6601
6 1 2.3591 -2.8200 0.6122
7 7 4.1530 -2.0623 1.4438
8 6 3.8456 -2.3025 2.8599
9 6 4.9787 -3.1457 0.8936
10 6 6.3506 -3.1354 1.5706
11 6 7.2103 -4.2641 0.9981
12 6 8.5615 -4.2544 1.6654
13 1 8.7849 -3.5167 2.4218
14 6 9.5129 -5.1866 1.3094
15 7 9.2415 -6.0841 0.3871
16 14 11.1880 -5.1742 2.1360
17 1 11.2410 -4.0727 3.1306
18 1 11.4107 -6.4718 2.8229
19 1 12.2438 -4.9684 1.1122
20 6 3.2417 -1.3609 -0.7620
21 8 2.0217 -0.6974 -1.1567
22 1 -0.3633 0.5029 0.8963
23 1 -0.3634 0.5247 -0.8836
24 1 -0.3633 -1.0276 -0.0125
25 1 2.6598 -0.0826 1.8588
26 1 1.2248 -1.1547 1.8199
27 1 3.2415 -3.2051 2.9526
28 1 4.7740 -2.4284 3.4170
29 1 3.2931 -1.4528 3.2611
30 1 4.4905 -4.1031 1.0761
31 1 5.1019 -2.9995 -0.1795
32 1 6.8387 -2.1781 1.3880
33 1 6.2274 -3.2816 2.6437
34 1 6.7221 -5.2214 1.1810
35 1 7.3337 -4.1184 -0.0751
36 1 9.9106 -6.7402 0.1370
37 1 4.0708 -0.6539 -0.7322
38 1 3.4649 -2.1874 -1.4367
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000401466903.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:38
Heat of formation + Delta-G solvation = -59.657708 kcal
Electronic energy + Delta-G solvation = -15966.815751 eV
Core-core repulsion = 13422.659592 eV
Total energy + Delta-G solvation = -2544.156159 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.84020 -36.98294 -33.72142 -32.33526 -31.53708 -29.75527 -27.47339 -25.92832
-24.65567 -22.65358 -21.30503 -20.20179 -19.88954 -16.79372 -16.22336 -16.02481
-15.53300 -14.70129 -14.54757 -14.15663 -13.90080 -13.76503 -13.08323 -12.56312
-12.49999 -12.28202 -12.26208 -11.81292 -11.51499 -11.25425 -11.02359 -10.97612
-10.82627 -10.75464 -10.48359 -10.42512 -9.71898 -9.60775 -9.32552 -9.03711
-8.33641 -8.15779 -5.98682 -4.00702 3.32008 3.39407 3.43791 3.69613
4.16317 4.45382 4.49373 4.63632 4.89127 5.12725 5.15624 5.24737
5.36575 5.37726 5.49157 5.59041 5.63279 5.68930 5.75900 5.82977
5.87191 5.89293 5.99686 6.04532 6.10611 6.30515 6.67444 6.72347
6.86714 7.10862 7.30846 7.34702 7.69683 7.84073 8.01770 8.45079
9.06755 9.63364 11.12830
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.062151 B = 0.004399 C = 0.004251
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 450.409290 B = 6363.346450 C = 6585.414207
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.073 3.927
3 H 0.067 0.933
4 C -0.146 4.146
5 C 0.049 3.951
6 H 0.054 0.946
7 N -0.532 5.532
8 C 0.022 3.978
9 C 0.053 3.947
10 C -0.104 4.104
11 C 0.021 3.979
12 C -0.518 4.518
13 H 0.055 0.945
14 C 0.055 3.945
15 N -0.896 5.896
16 Si 0.891 3.109
17 H -0.273 1.273
18 H -0.285 1.285
19 H -0.284 1.284
20 C 0.056 3.944
21 O -0.377 6.377
22 H 0.067 0.933
23 H 0.061 0.939
24 H 0.061 0.939
25 H 0.086 0.914
26 H 0.074 0.926
27 H 0.022 0.978
28 H 0.078 0.922
29 H 0.062 0.938
30 H 0.030 0.970
31 H 0.070 0.930
32 H 0.056 0.944
33 H 0.048 0.952
34 H 0.013 0.987
35 H 0.016 0.984
36 H 0.259 0.741
37 H 0.074 0.926
38 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.775 10.265 1.403 18.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.015 3.985
3 H 0.085 0.915
4 C -0.184 4.184
5 C -0.060 4.060
6 H 0.072 0.928
7 N -0.257 5.257
8 C -0.126 4.126
9 C -0.074 4.074
10 C -0.142 4.142
11 C -0.017 4.017
12 C -0.556 4.556
13 H 0.074 0.926
14 C -0.145 4.145
15 N -0.536 5.536
16 Si 0.719 3.281
17 H -0.197 1.197
18 H -0.211 1.211
19 H -0.210 1.210
20 C -0.021 4.021
21 O -0.296 6.296
22 H 0.086 0.914
23 H 0.080 0.920
24 H 0.080 0.920
25 H 0.105 0.895
26 H 0.092 0.908
27 H 0.040 0.960
28 H 0.096 0.904
29 H 0.081 0.919
30 H 0.048 0.952
31 H 0.088 0.912
32 H 0.074 0.926
33 H 0.066 0.934
34 H 0.032 0.968
35 H 0.034 0.966
36 H 0.069 0.931
37 H 0.092 0.908
38 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -15.543 10.557 1.067 18.820
hybrid contribution 0.618 -0.940 0.685 1.317
sum -14.925 9.617 1.752 17.842
Atomic orbital electron populations
1.21935 0.94019 1.02663 1.02151 1.22671 0.94766 0.95901 0.85114
0.91457 1.23085 0.99399 0.97788 0.98090 1.23178 0.91051 0.97512
0.94303 0.92843 1.62167 1.15631 1.45539 1.02363 1.22433 1.01594
0.99289 0.89308 1.22365 0.94915 0.90539 0.99596 1.21655 0.92566
1.01134 0.98872 1.19084 0.93786 0.92511 0.96286 1.21284 0.98242
1.14513 1.21551 0.92625 1.25033 0.98731 0.95573 0.95212 1.69975
1.34599 1.17954 1.31070 0.86544 0.84254 0.77839 0.79416 1.19725
1.21072 1.21009 1.23567 0.87510 0.96826 0.94159 1.88867 1.39969
1.67774 1.33011 0.91420 0.92032 0.92026 0.89524 0.90752 0.95982
0.90378 0.91878 0.95187 0.91158 0.92560 0.93376 0.96837 0.96577
0.93096 0.90793 0.88962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 9.37 37.16 0.35 -0.96 16
2 C 0.07 0.79 4.05 -26.16 -0.11 0.69 16
3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
4 C -0.15 -1.56 5.18 -25.20 -0.13 -1.69 16
5 C 0.05 0.64 2.80 -65.71 -0.18 0.45 16
6 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16
7 N -0.53 -7.89 4.61 -232.47 -1.07 -8.96 16
8 C 0.02 0.29 9.06 60.06 0.54 0.83 16
9 C 0.05 0.92 4.86 -3.83 -0.02 0.90 16
10 C -0.10 -2.17 5.08 -26.73 -0.14 -2.30 16
11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16
12 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16
13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16
14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16
15 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16
16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16
17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16
19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
20 C 0.06 0.75 6.39 38.21 0.24 0.99 16
21 O -0.38 -5.10 11.19 -35.23 -0.39 -5.49 16
22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
25 H 0.09 0.92 7.33 -51.93 -0.38 0.54 16
26 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16
27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16
28 H 0.08 1.11 6.30 -51.93 -0.33 0.79 16
29 H 0.06 0.71 6.64 -51.93 -0.34 0.36 16
30 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16
31 H 0.07 1.21 6.93 -51.93 -0.36 0.85 16
32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
33 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16
34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16
36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.09 1.20 7.83 -51.93 -0.41 0.79 16
LS Contribution 301.07 15.07 4.54 4.54
Total: -1.00 -30.37 301.07 -7.95 -38.32
By element:
Atomic # 1 Polarization: 2.27 SS G_CDS: -6.75 Total: -4.47 kcal
Atomic # 6 Polarization: -14.30 SS G_CDS: 0.01 Total: -14.29 kcal
Atomic # 7 Polarization: -35.05 SS G_CDS: -0.34 Total: -35.39 kcal
Atomic # 8 Polarization: -5.10 SS G_CDS: -0.39 Total: -5.49 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.37 -7.95 -38.32 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000401466903.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.335 kcal
(2) G-P(sol) polarization free energy of solvation -30.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds