Wall clock time and date at job start Mon Mar 30 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.87039 * 2 1 4 4 C 1.54104 * 109.88136 * 121.00881 * 2 1 3 5 5 C 1.54805 * 104.18715 * 121.60340 * 4 2 1 6 6 H 1.09008 * 110.90524 * 262.68042 * 5 4 2 7 7 N 1.46904 * 110.90536 * 139.11733 * 5 4 2 8 8 C 1.46892 * 111.00168 * 56.04102 * 7 5 4 9 9 C 1.46902 * 110.99924 * 179.97438 * 7 5 4 10 10 C 1.52996 * 109.47110 * 169.99713 * 9 7 5 11 11 C 1.52998 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47314 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00124 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00354 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00483 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47123 * 119.99742 * 16 14 12 19 19 H 1.48497 * 109.47676 * 240.00264 * 16 14 12 20 20 C 1.54993 * 102.09764 * 20.87963 * 5 4 2 21 21 O 1.43741 * 110.00290 * 238.91266 * 2 1 3 22 22 H 1.09003 * 109.46790 * 299.29523 * 1 2 3 23 23 H 1.08999 * 109.47529 * 59.29844 * 1 2 3 24 24 H 1.08998 * 109.47103 * 179.30219 * 1 2 3 25 25 H 1.09004 * 110.48326 * 240.27942 * 4 2 1 26 26 H 1.09003 * 110.48376 * 2.92383 * 4 2 1 27 27 H 1.09006 * 109.47181 * 60.00062 * 8 7 5 28 28 H 1.09001 * 109.47088 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47635 * 299.99921 * 8 7 5 30 30 H 1.09004 * 109.47218 * 290.00113 * 9 7 5 31 31 H 1.09003 * 109.47019 * 49.99477 * 9 7 5 32 32 H 1.08997 * 109.47185 * 299.99441 * 10 9 7 33 33 H 1.08995 * 109.47063 * 59.99930 * 10 9 7 34 34 H 1.09004 * 109.47276 * 299.99893 * 11 10 9 35 35 H 1.09008 * 109.47317 * 60.00008 * 11 10 9 36 36 H 0.96994 * 120.00338 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.61715 * 81.47543 * 20 5 4 38 38 H 1.08999 * 110.61939 * 204.47512 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7466 1.2421 5 6 2.9227 -1.8882 0.6601 6 1 2.3591 -2.8200 0.6122 7 7 4.1530 -2.0623 1.4438 8 6 3.8456 -2.3025 2.8599 9 6 4.9787 -3.1457 0.8936 10 6 6.3506 -3.1354 1.5706 11 6 7.2103 -4.2641 0.9981 12 6 8.5615 -4.2544 1.6654 13 1 8.7849 -3.5167 2.4218 14 6 9.5129 -5.1866 1.3094 15 7 9.2415 -6.0841 0.3871 16 14 11.1880 -5.1742 2.1360 17 1 11.2410 -4.0727 3.1306 18 1 11.4107 -6.4718 2.8229 19 1 12.2438 -4.9684 1.1122 20 6 3.2417 -1.3609 -0.7620 21 8 2.0217 -0.6974 -1.1567 22 1 -0.3633 0.5029 0.8963 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 2.6598 -0.0826 1.8588 26 1 1.2248 -1.1547 1.8199 27 1 3.2415 -3.2051 2.9526 28 1 4.7740 -2.4284 3.4170 29 1 3.2931 -1.4528 3.2611 30 1 4.4905 -4.1031 1.0761 31 1 5.1019 -2.9995 -0.1795 32 1 6.8387 -2.1781 1.3880 33 1 6.2274 -3.2816 2.6437 34 1 6.7221 -5.2214 1.1810 35 1 7.3337 -4.1184 -0.0751 36 1 9.9106 -6.7402 0.1370 37 1 4.0708 -0.6539 -0.7322 38 1 3.4649 -2.1874 -1.4367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401466903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:38 Heat of formation + Delta-G solvation = -59.657708 kcal Electronic energy + Delta-G solvation = -15966.815751 eV Core-core repulsion = 13422.659592 eV Total energy + Delta-G solvation = -2544.156159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84020 -36.98294 -33.72142 -32.33526 -31.53708 -29.75527 -27.47339 -25.92832 -24.65567 -22.65358 -21.30503 -20.20179 -19.88954 -16.79372 -16.22336 -16.02481 -15.53300 -14.70129 -14.54757 -14.15663 -13.90080 -13.76503 -13.08323 -12.56312 -12.49999 -12.28202 -12.26208 -11.81292 -11.51499 -11.25425 -11.02359 -10.97612 -10.82627 -10.75464 -10.48359 -10.42512 -9.71898 -9.60775 -9.32552 -9.03711 -8.33641 -8.15779 -5.98682 -4.00702 3.32008 3.39407 3.43791 3.69613 4.16317 4.45382 4.49373 4.63632 4.89127 5.12725 5.15624 5.24737 5.36575 5.37726 5.49157 5.59041 5.63279 5.68930 5.75900 5.82977 5.87191 5.89293 5.99686 6.04532 6.10611 6.30515 6.67444 6.72347 6.86714 7.10862 7.30846 7.34702 7.69683 7.84073 8.01770 8.45079 9.06755 9.63364 11.12830 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.062151 B = 0.004399 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.409290 B = 6363.346450 C = 6585.414207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.067 0.933 4 C -0.146 4.146 5 C 0.049 3.951 6 H 0.054 0.946 7 N -0.532 5.532 8 C 0.022 3.978 9 C 0.053 3.947 10 C -0.104 4.104 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.056 3.944 21 O -0.377 6.377 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.074 0.926 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 10.265 1.403 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 H 0.085 0.915 4 C -0.184 4.184 5 C -0.060 4.060 6 H 0.072 0.928 7 N -0.257 5.257 8 C -0.126 4.126 9 C -0.074 4.074 10 C -0.142 4.142 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.021 4.021 21 O -0.296 6.296 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.543 10.557 1.067 18.820 hybrid contribution 0.618 -0.940 0.685 1.317 sum -14.925 9.617 1.752 17.842 Atomic orbital electron populations 1.21935 0.94019 1.02663 1.02151 1.22671 0.94766 0.95901 0.85114 0.91457 1.23085 0.99399 0.97788 0.98090 1.23178 0.91051 0.97512 0.94303 0.92843 1.62167 1.15631 1.45539 1.02363 1.22433 1.01594 0.99289 0.89308 1.22365 0.94915 0.90539 0.99596 1.21655 0.92566 1.01134 0.98872 1.19084 0.93786 0.92511 0.96286 1.21284 0.98242 1.14513 1.21551 0.92625 1.25033 0.98731 0.95573 0.95212 1.69975 1.34599 1.17954 1.31070 0.86544 0.84254 0.77839 0.79416 1.19725 1.21072 1.21009 1.23567 0.87510 0.96826 0.94159 1.88867 1.39969 1.67774 1.33011 0.91420 0.92032 0.92026 0.89524 0.90752 0.95982 0.90378 0.91878 0.95187 0.91158 0.92560 0.93376 0.96837 0.96577 0.93096 0.90793 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.37 37.16 0.35 -0.96 16 2 C 0.07 0.79 4.05 -26.16 -0.11 0.69 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.15 -1.56 5.18 -25.20 -0.13 -1.69 16 5 C 0.05 0.64 2.80 -65.71 -0.18 0.45 16 6 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 7 N -0.53 -7.89 4.61 -232.47 -1.07 -8.96 16 8 C 0.02 0.29 9.06 60.06 0.54 0.83 16 9 C 0.05 0.92 4.86 -3.83 -0.02 0.90 16 10 C -0.10 -2.17 5.08 -26.73 -0.14 -2.30 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.06 0.75 6.39 38.21 0.24 0.99 16 21 O -0.38 -5.10 11.19 -35.23 -0.39 -5.49 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.92 7.33 -51.93 -0.38 0.54 16 26 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 1.11 6.30 -51.93 -0.33 0.79 16 29 H 0.06 0.71 6.64 -51.93 -0.34 0.36 16 30 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.07 1.21 6.93 -51.93 -0.36 0.85 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.20 7.83 -51.93 -0.41 0.79 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -30.37 301.07 -7.95 -38.32 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -6.75 Total: -4.47 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 0.01 Total: -14.29 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.34 Total: -35.39 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.39 Total: -5.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.37 -7.95 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401466903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.335 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds