Wall clock time and date at job start Mon Mar 30 2020 03:15:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.87039 * 2 1
4 4 C 1.54104 * 109.88136 * 121.00881 * 2 1 3
5 5 C 1.54805 * 104.18715 * 121.60340 * 4 2 1
6 6 H 1.09008 * 110.90524 * 262.68042 * 5 4 2
7 7 N 1.46904 * 110.90536 * 139.11733 * 5 4 2
8 8 C 1.46892 * 111.00168 * 56.04102 * 7 5 4
9 9 C 1.46902 * 110.99924 * 179.97438 * 7 5 4
10 10 C 1.52996 * 109.47110 * 169.99713 * 9 7 5
11 11 C 1.52998 * 109.47164 * 179.97438 * 10 9 7
12 12 C 1.50695 * 109.47314 * 180.02562 * 11 10 9
13 13 H 1.07994 * 120.00124 * 359.97438 * 12 11 10
14 14 C 1.37877 * 120.00354 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11
16 16 Si 1.86798 * 120.00483 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.46965 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.47123 * 119.99742 * 16 14 12
19 19 H 1.48497 * 109.47676 * 240.00264 * 16 14 12
20 20 C 1.54993 * 102.09764 * 20.87963 * 5 4 2
21 21 O 1.43741 * 110.00290 * 238.91266 * 2 1 3
22 22 H 1.09003 * 109.46790 * 299.29523 * 1 2 3
23 23 H 1.08999 * 109.47529 * 59.29844 * 1 2 3
24 24 H 1.08998 * 109.47103 * 179.30219 * 1 2 3
25 25 H 1.09004 * 110.48326 * 240.27942 * 4 2 1
26 26 H 1.09003 * 110.48376 * 2.92383 * 4 2 1
27 27 H 1.09006 * 109.47181 * 60.00062 * 8 7 5
28 28 H 1.09001 * 109.47088 * 179.97438 * 8 7 5
29 29 H 1.08997 * 109.47635 * 299.99921 * 8 7 5
30 30 H 1.09004 * 109.47218 * 290.00113 * 9 7 5
31 31 H 1.09003 * 109.47019 * 49.99477 * 9 7 5
32 32 H 1.08997 * 109.47185 * 299.99441 * 10 9 7
33 33 H 1.08995 * 109.47063 * 59.99930 * 10 9 7
34 34 H 1.09004 * 109.47276 * 299.99893 * 11 10 9
35 35 H 1.09008 * 109.47317 * 60.00008 * 11 10 9
36 36 H 0.96994 * 120.00338 * 180.02562 * 15 14 12
37 37 H 1.09000 * 110.61715 * 81.47543 * 20 5 4
38 38 H 1.08999 * 110.61939 * 204.47512 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7466 1.2421
5 6 2.9227 -1.8882 0.6601
6 1 2.3591 -2.8200 0.6122
7 7 4.1530 -2.0623 1.4438
8 6 3.8456 -2.3025 2.8599
9 6 4.9787 -3.1457 0.8936
10 6 6.3506 -3.1354 1.5706
11 6 7.2103 -4.2641 0.9981
12 6 8.5615 -4.2544 1.6654
13 1 8.7849 -3.5167 2.4218
14 6 9.5129 -5.1866 1.3094
15 7 9.2415 -6.0841 0.3871
16 14 11.1880 -5.1742 2.1360
17 1 11.2410 -4.0727 3.1306
18 1 11.4107 -6.4718 2.8229
19 1 12.2438 -4.9684 1.1122
20 6 3.2417 -1.3609 -0.7620
21 8 2.0217 -0.6974 -1.1567
22 1 -0.3633 0.5029 0.8963
23 1 -0.3634 0.5247 -0.8836
24 1 -0.3633 -1.0276 -0.0125
25 1 2.6598 -0.0826 1.8588
26 1 1.2248 -1.1547 1.8199
27 1 3.2415 -3.2051 2.9526
28 1 4.7740 -2.4284 3.4170
29 1 3.2931 -1.4528 3.2611
30 1 4.4905 -4.1031 1.0761
31 1 5.1019 -2.9995 -0.1795
32 1 6.8387 -2.1781 1.3880
33 1 6.2274 -3.2816 2.6437
34 1 6.7221 -5.2214 1.1810
35 1 7.3337 -4.1184 -0.0751
36 1 9.9106 -6.7402 0.1370
37 1 4.0708 -0.6539 -0.7322
38 1 3.4649 -2.1874 -1.4367
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000401466903.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:37
Heat of formation + Delta-G solvation = -79.335295 kcal
Electronic energy + Delta-G solvation = -15967.669035 eV
Core-core repulsion = 13422.659592 eV
Total energy + Delta-G solvation = -2545.009443 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.84162 -38.22640 -35.66440 -33.61805 -32.94133 -30.95643 -28.92540 -27.25728
-25.89997 -24.29161 -22.36395 -21.61226 -21.18940 -18.50787 -17.74278 -17.04087
-16.59901 -16.48299 -15.94911 -15.48119 -15.11965 -14.96402 -14.32014 -14.07834
-13.66984 -13.51526 -13.31786 -13.11138 -13.00002 -12.70722 -12.57737 -12.51281
-12.15476 -11.99338 -11.79475 -11.71142 -11.39769 -11.31615 -11.05840 -10.66882
-10.55391 -9.35823 -8.20170 -6.31119 1.40300 1.40641 1.54199 2.40841
2.66518 3.12087 3.13132 3.50778 3.77299 4.01761 4.08882 4.17295
4.26818 4.28612 4.43840 4.54714 4.66290 4.68534 4.72660 4.75115
4.83098 4.86733 4.95318 5.01440 5.05280 5.10185 5.11910 5.26372
5.30842 5.52563 5.73525 5.85546 5.88198 6.02614 6.16348 6.27242
6.86040 7.38261 8.92015
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.062151 B = 0.004399 C = 0.004251
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 450.409290 B = 6363.346450 C = 6585.414207
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.066 3.934
3 H 0.074 0.926
4 C -0.136 4.136
5 C 0.048 3.952
6 H 0.051 0.949
7 N -0.535 5.535
8 C 0.021 3.979
9 C 0.064 3.936
10 C -0.088 4.088
11 C 0.024 3.976
12 C -0.541 4.541
13 H 0.060 0.940
14 C -0.002 4.002
15 N -0.934 5.934
16 Si 0.966 3.034
17 H -0.262 1.262
18 H -0.278 1.278
19 H -0.278 1.278
20 C 0.056 3.944
21 O -0.395 6.395
22 H 0.090 0.910
23 H 0.061 0.939
24 H 0.057 0.943
25 H 0.091 0.909
26 H 0.092 0.908
27 H 0.025 0.975
28 H 0.066 0.934
29 H 0.089 0.911
30 H 0.025 0.975
31 H 0.067 0.933
32 H 0.052 0.948
33 H 0.053 0.947
34 H -0.010 1.010
35 H -0.008 1.008
36 H 0.263 0.737
37 H 0.067 0.933
38 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.292 11.427 2.693 20.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.008 3.992
3 H 0.092 0.908
4 C -0.174 4.174
5 C -0.061 4.061
6 H 0.069 0.931
7 N -0.260 5.260
8 C -0.127 4.127
9 C -0.064 4.064
10 C -0.126 4.126
11 C -0.013 4.013
12 C -0.579 4.579
13 H 0.078 0.922
14 C -0.199 4.199
15 N -0.575 5.575
16 Si 0.790 3.210
17 H -0.185 1.185
18 H -0.203 1.203
19 H -0.204 1.204
20 C -0.021 4.021
21 O -0.314 6.314
22 H 0.109 0.891
23 H 0.080 0.920
24 H 0.076 0.924
25 H 0.109 0.891
26 H 0.111 0.889
27 H 0.043 0.957
28 H 0.085 0.915
29 H 0.108 0.892
30 H 0.043 0.957
31 H 0.086 0.914
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.008 0.992
35 H 0.010 0.990
36 H 0.072 0.928
37 H 0.085 0.915
38 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -16.080 11.736 2.367 20.048
hybrid contribution 0.733 -1.288 0.257 1.504
sum -15.347 10.449 2.624 18.751
Atomic orbital electron populations
1.21938 0.92331 1.02773 1.03337 1.22910 0.96148 0.95914 0.84221
0.90810 1.23061 0.99453 0.96746 0.98139 1.23206 0.90453 0.98366
0.94109 0.93129 1.62098 1.16562 1.43970 1.03356 1.22496 1.01441
1.00671 0.88100 1.22081 0.93667 0.91412 0.99203 1.21389 0.93581
0.98615 0.99046 1.18987 0.94053 0.93342 0.94939 1.21715 0.99517
1.14785 1.21895 0.92221 1.25996 1.03134 0.95026 0.95776 1.70104
1.36198 1.18705 1.32458 0.85387 0.78792 0.78289 0.78509 1.18548
1.20339 1.20360 1.23513 0.87535 0.96617 0.94460 1.88855 1.39860
1.68116 1.34553 0.89149 0.92012 0.92397 0.89081 0.88940 0.95658
0.91513 0.89237 0.95717 0.91403 0.92873 0.92884 0.99199 0.98991
0.92782 0.91452 0.89397
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.19 9.37 71.98 0.67 -1.51 16
2 C 0.07 1.28 4.05 30.97 0.13 1.40 16
3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
4 C -0.14 -2.56 5.18 31.58 0.16 -2.40 16
5 C 0.05 1.17 2.80 46.21 0.13 1.30 16
6 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
7 N -0.53 -15.22 4.61 -889.42 -4.10 -19.32 16
8 C 0.02 0.51 9.06 127.69 1.16 1.66 16
9 C 0.06 2.23 4.86 86.30 0.42 2.65 16
10 C -0.09 -3.70 5.08 30.59 0.16 -3.54 16
11 C 0.02 1.31 4.97 29.85 0.15 1.46 16
12 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16
13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16
14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16
15 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16
16 Si 0.97 44.65 29.54 68.60 2.03 46.68 16
17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
20 C 0.06 1.46 6.39 72.66 0.46 1.92 16
21 O -0.39 -10.28 11.19 -148.98 -1.67 -11.95 16
22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.09 1.66 7.33 -2.38 -0.02 1.64 16
26 H 0.09 1.42 7.70 -2.39 -0.02 1.40 16
27 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16
28 H 0.07 1.80 6.30 -2.39 -0.02 1.79 16
29 H 0.09 1.74 6.64 -2.39 -0.02 1.72 16
30 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16
31 H 0.07 2.38 6.93 -2.39 -0.02 2.36 16
32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.05 2.15 6.47 -2.39 -0.02 2.14 16
34 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16
35 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16
36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16
37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
38 H 0.09 2.31 7.83 -2.39 -0.02 2.29 16
Total: -1.00 -64.89 301.07 1.67 -63.22
By element:
Atomic # 1 Polarization: 5.30 SS G_CDS: 1.00 Total: 6.30 kcal
Atomic # 6 Polarization: -31.86 SS G_CDS: 4.13 Total: -27.73 kcal
Atomic # 7 Polarization: -72.70 SS G_CDS: -3.82 Total: -76.52 kcal
Atomic # 8 Polarization: -10.28 SS G_CDS: -1.67 Total: -11.95 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -64.89 1.67 -63.22 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000401466903.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.114 kcal
(2) G-P(sol) polarization free energy of solvation -64.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds