Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.87039 * 2 1 4 4 C 1.54104 * 109.88136 * 121.00881 * 2 1 3 5 5 C 1.54805 * 104.18715 * 121.60340 * 4 2 1 6 6 H 1.09008 * 110.90524 * 262.68042 * 5 4 2 7 7 N 1.46904 * 110.90536 * 139.11733 * 5 4 2 8 8 C 1.46892 * 111.00168 * 56.04102 * 7 5 4 9 9 C 1.46902 * 110.99924 * 179.97438 * 7 5 4 10 10 C 1.52996 * 109.47110 * 169.99713 * 9 7 5 11 11 C 1.52998 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47314 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00124 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00354 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99998 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00483 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47123 * 119.99742 * 16 14 12 19 19 H 1.48497 * 109.47676 * 240.00264 * 16 14 12 20 20 C 1.54993 * 102.09764 * 20.87963 * 5 4 2 21 21 O 1.43741 * 110.00290 * 238.91266 * 2 1 3 22 22 H 1.09003 * 109.46790 * 299.29523 * 1 2 3 23 23 H 1.08999 * 109.47529 * 59.29844 * 1 2 3 24 24 H 1.08998 * 109.47103 * 179.30219 * 1 2 3 25 25 H 1.09004 * 110.48326 * 240.27942 * 4 2 1 26 26 H 1.09003 * 110.48376 * 2.92383 * 4 2 1 27 27 H 1.09006 * 109.47181 * 60.00062 * 8 7 5 28 28 H 1.09001 * 109.47088 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47635 * 299.99921 * 8 7 5 30 30 H 1.09004 * 109.47218 * 290.00113 * 9 7 5 31 31 H 1.09003 * 109.47019 * 49.99477 * 9 7 5 32 32 H 1.08997 * 109.47185 * 299.99441 * 10 9 7 33 33 H 1.08995 * 109.47063 * 59.99930 * 10 9 7 34 34 H 1.09004 * 109.47276 * 299.99893 * 11 10 9 35 35 H 1.09008 * 109.47317 * 60.00008 * 11 10 9 36 36 H 0.96994 * 120.00338 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.61715 * 81.47543 * 20 5 4 38 38 H 1.08999 * 110.61939 * 204.47512 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7466 1.2421 5 6 2.9227 -1.8882 0.6601 6 1 2.3591 -2.8200 0.6122 7 7 4.1530 -2.0623 1.4438 8 6 3.8456 -2.3025 2.8599 9 6 4.9787 -3.1457 0.8936 10 6 6.3506 -3.1354 1.5706 11 6 7.2103 -4.2641 0.9981 12 6 8.5615 -4.2544 1.6654 13 1 8.7849 -3.5167 2.4218 14 6 9.5129 -5.1866 1.3094 15 7 9.2415 -6.0841 0.3871 16 14 11.1880 -5.1742 2.1360 17 1 11.2410 -4.0727 3.1306 18 1 11.4107 -6.4718 2.8229 19 1 12.2438 -4.9684 1.1122 20 6 3.2417 -1.3609 -0.7620 21 8 2.0217 -0.6974 -1.1567 22 1 -0.3633 0.5029 0.8963 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 2.6598 -0.0826 1.8588 26 1 1.2248 -1.1547 1.8199 27 1 3.2415 -3.2051 2.9526 28 1 4.7740 -2.4284 3.4170 29 1 3.2931 -1.4528 3.2611 30 1 4.4905 -4.1031 1.0761 31 1 5.1019 -2.9995 -0.1795 32 1 6.8387 -2.1781 1.3880 33 1 6.2274 -3.2816 2.6437 34 1 6.7221 -5.2214 1.1810 35 1 7.3337 -4.1184 -0.0751 36 1 9.9106 -6.7402 0.1370 37 1 4.0708 -0.6539 -0.7322 38 1 3.4649 -2.1874 -1.4367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401466903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -79.335295 kcal Electronic energy + Delta-G solvation = -15967.669035 eV Core-core repulsion = 13422.659592 eV Total energy + Delta-G solvation = -2545.009443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84162 -38.22640 -35.66440 -33.61805 -32.94133 -30.95643 -28.92540 -27.25728 -25.89997 -24.29161 -22.36395 -21.61226 -21.18940 -18.50787 -17.74278 -17.04087 -16.59901 -16.48299 -15.94911 -15.48119 -15.11965 -14.96402 -14.32014 -14.07834 -13.66984 -13.51526 -13.31786 -13.11138 -13.00002 -12.70722 -12.57737 -12.51281 -12.15476 -11.99338 -11.79475 -11.71142 -11.39769 -11.31615 -11.05840 -10.66882 -10.55391 -9.35823 -8.20170 -6.31119 1.40300 1.40641 1.54199 2.40841 2.66518 3.12087 3.13132 3.50778 3.77299 4.01761 4.08882 4.17295 4.26818 4.28612 4.43840 4.54714 4.66290 4.68534 4.72660 4.75115 4.83098 4.86733 4.95318 5.01440 5.05280 5.10185 5.11910 5.26372 5.30842 5.52563 5.73525 5.85546 5.88198 6.02614 6.16348 6.27242 6.86040 7.38261 8.92015 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.062151 B = 0.004399 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.409290 B = 6363.346450 C = 6585.414207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.048 3.952 6 H 0.051 0.949 7 N -0.535 5.535 8 C 0.021 3.979 9 C 0.064 3.936 10 C -0.088 4.088 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.056 3.944 21 O -0.395 6.395 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.053 0.947 34 H -0.010 1.010 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.292 11.427 2.693 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.174 4.174 5 C -0.061 4.061 6 H 0.069 0.931 7 N -0.260 5.260 8 C -0.127 4.127 9 C -0.064 4.064 10 C -0.126 4.126 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.021 4.021 21 O -0.314 6.314 22 H 0.109 0.891 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.080 11.736 2.367 20.048 hybrid contribution 0.733 -1.288 0.257 1.504 sum -15.347 10.449 2.624 18.751 Atomic orbital electron populations 1.21938 0.92331 1.02773 1.03337 1.22910 0.96148 0.95914 0.84221 0.90810 1.23061 0.99453 0.96746 0.98139 1.23206 0.90453 0.98366 0.94109 0.93129 1.62098 1.16562 1.43970 1.03356 1.22496 1.01441 1.00671 0.88100 1.22081 0.93667 0.91412 0.99203 1.21389 0.93581 0.98615 0.99046 1.18987 0.94053 0.93342 0.94939 1.21715 0.99517 1.14785 1.21895 0.92221 1.25996 1.03134 0.95026 0.95776 1.70104 1.36198 1.18705 1.32458 0.85387 0.78792 0.78289 0.78509 1.18548 1.20339 1.20360 1.23513 0.87535 0.96617 0.94460 1.88855 1.39860 1.68116 1.34553 0.89149 0.92012 0.92397 0.89081 0.88940 0.95658 0.91513 0.89237 0.95717 0.91403 0.92873 0.92884 0.99199 0.98991 0.92782 0.91452 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.37 71.98 0.67 -1.51 16 2 C 0.07 1.28 4.05 30.97 0.13 1.40 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.14 -2.56 5.18 31.58 0.16 -2.40 16 5 C 0.05 1.17 2.80 46.21 0.13 1.30 16 6 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 7 N -0.53 -15.22 4.61 -889.42 -4.10 -19.32 16 8 C 0.02 0.51 9.06 127.69 1.16 1.66 16 9 C 0.06 2.23 4.86 86.30 0.42 2.65 16 10 C -0.09 -3.70 5.08 30.59 0.16 -3.54 16 11 C 0.02 1.31 4.97 29.85 0.15 1.46 16 12 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 15 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 16 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C 0.06 1.46 6.39 72.66 0.46 1.92 16 21 O -0.39 -10.28 11.19 -148.98 -1.67 -11.95 16 22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 1.66 7.33 -2.38 -0.02 1.64 16 26 H 0.09 1.42 7.70 -2.39 -0.02 1.40 16 27 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 1.80 6.30 -2.39 -0.02 1.79 16 29 H 0.09 1.74 6.64 -2.39 -0.02 1.72 16 30 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.07 2.38 6.93 -2.39 -0.02 2.36 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 2.15 6.47 -2.39 -0.02 2.14 16 34 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 35 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 2.31 7.83 -2.39 -0.02 2.29 16 Total: -1.00 -64.89 301.07 1.67 -63.22 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.00 Total: 6.30 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.13 Total: -27.73 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -3.82 Total: -76.52 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.67 Total: -11.95 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.89 1.67 -63.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401466903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.114 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds