Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.33276 * 2 1 4 4 O 1.44424 * 110.37555 * 237.62665 * 2 1 3 5 5 C 1.44427 * 105.27650 * 200.65761 * 4 2 1 6 6 C 1.54482 * 104.80148 * 40.51527 * 5 4 2 7 7 H 1.09002 * 110.51357 * 94.66392 * 6 5 4 8 8 N 1.46899 * 110.62463 * 217.31702 * 6 5 4 9 9 C 1.46901 * 111.00247 * 271.61222 * 8 6 5 10 10 C 1.52990 * 109.47229 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47347 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00625 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99707 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99690 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47577 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46965 * 120.00255 * 16 14 12 19 19 H 1.48507 * 109.46964 * 239.99796 * 16 14 12 20 20 C 1.54483 * 110.36912 * 122.24933 * 2 1 3 21 21 H 1.09004 * 110.50507 * 261.45634 * 20 2 1 22 22 C 1.52996 * 110.51400 * 24.16504 * 20 2 1 23 23 H 1.08991 * 109.47420 * 297.75403 * 1 2 3 24 24 H 1.09004 * 109.46616 * 57.75690 * 1 2 3 25 25 H 1.08998 * 109.47349 * 177.74678 * 1 2 3 26 26 H 1.08999 * 110.37600 * 281.68204 * 5 4 2 27 27 H 1.09000 * 110.37247 * 159.34210 * 5 4 2 28 28 H 1.00900 * 110.99708 * 147.66069 * 8 6 5 29 29 H 1.09001 * 109.47166 * 300.00554 * 9 8 6 30 30 H 1.09002 * 109.46687 * 60.00174 * 9 8 6 31 31 H 1.09001 * 109.47374 * 300.00274 * 10 9 8 32 32 H 1.09002 * 109.47268 * 60.00377 * 10 9 8 33 33 H 1.09001 * 109.47096 * 300.00431 * 11 10 9 34 34 H 1.09002 * 109.46640 * 59.99978 * 11 10 9 35 35 H 0.97004 * 120.00346 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47342 * 174.64856 * 22 20 2 37 37 H 1.09008 * 109.46965 * 294.64420 * 22 20 2 38 38 H 1.09000 * 109.47242 * 54.63914 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0880 -0.7982 6 6 3.3177 -1.5050 0.6876 7 1 3.1955 -2.5845 0.7761 8 7 4.5209 -1.0640 1.4058 9 6 5.5822 -2.0767 1.3266 10 6 6.8158 -1.5831 2.0849 11 6 7.9214 -2.6375 2.0019 12 6 9.1367 -2.1510 2.7482 13 1 9.1221 -1.1864 3.2336 14 6 10.2676 -2.9374 2.8114 15 7 10.2852 -4.1122 2.2208 16 14 11.7738 -2.3346 3.7371 17 1 11.4988 -0.9922 4.3095 18 1 12.0936 -3.2836 4.8336 19 1 12.9265 -2.2490 2.8047 20 6 2.0677 -0.7728 1.2248 21 1 2.3428 -0.0817 2.0217 22 6 1.0287 -1.7799 1.7218 23 1 -0.3634 0.4785 0.9093 24 1 -0.3633 0.5483 -0.8692 25 1 -0.3634 -1.0268 -0.0404 26 1 4.0526 -0.2334 -0.9217 27 1 3.7243 -1.9238 -1.4114 28 1 4.3069 -0.8389 2.3658 29 1 5.2304 -3.0072 1.7723 30 1 5.8421 -2.2496 0.2823 31 1 7.1677 -0.6524 1.6396 32 1 6.5555 -1.4105 3.1292 33 1 7.5697 -3.5684 2.4469 34 1 8.1815 -2.8097 0.9575 35 1 11.0809 -4.6654 2.2649 36 1 1.4589 -2.3802 2.5233 37 1 0.1553 -1.2460 2.0964 38 1 0.7314 -2.4309 0.8996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405529074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = -69.132673 kcal Electronic energy + Delta-G solvation = -15802.229327 eV Core-core repulsion = 13257.662303 eV Total energy + Delta-G solvation = -2544.567024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99811 -36.10706 -33.91260 -33.29020 -31.56154 -29.58705 -27.42620 -25.79076 -25.05056 -22.61950 -21.12265 -20.40672 -19.66988 -16.60597 -16.29227 -15.75112 -15.65121 -15.18856 -14.55215 -14.26199 -13.78964 -13.59184 -12.97995 -12.69893 -12.56283 -12.28978 -12.01674 -12.01415 -11.56850 -11.33796 -10.99628 -10.91325 -10.79419 -10.66791 -10.54748 -10.43918 -9.77678 -9.68699 -9.33798 -9.04177 -8.34606 -8.26024 -5.99328 -4.01396 3.31619 3.38983 3.43492 3.80628 4.30849 4.36915 4.47999 4.58574 4.79512 5.11893 5.17963 5.22571 5.29143 5.36599 5.43159 5.49642 5.66138 5.70411 5.72653 5.78215 5.85634 5.87851 5.96845 6.00379 6.08351 6.29494 6.67042 6.69576 6.84825 7.12468 7.30803 7.55480 7.68881 7.83229 8.01016 8.44246 9.06049 9.62660 11.12175 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066517 B = 0.004007 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.841664 B = 6985.803538 C = 7055.036083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.069 0.931 4 O -0.376 6.376 5 C 0.054 3.946 6 C 0.055 3.945 7 H 0.058 0.942 8 N -0.681 5.681 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.125 4.125 21 H 0.089 0.911 22 C -0.143 4.143 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.340 0.660 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.709 6.221 -2.591 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 H 0.087 0.913 4 O -0.295 6.295 5 C -0.023 4.023 6 C -0.055 4.055 7 H 0.076 0.924 8 N -0.314 5.314 9 C -0.071 4.071 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.144 4.144 21 H 0.107 0.893 22 C -0.200 4.200 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.159 0.841 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.479 6.384 -3.354 19.836 hybrid contribution 0.800 -0.468 1.298 1.595 sum -17.678 5.916 -2.056 18.755 Atomic orbital electron populations 1.21890 0.93611 1.02981 1.02039 1.22917 0.94867 0.95352 0.84913 0.91314 1.89103 1.27625 1.74491 1.38260 1.23463 0.83963 1.00649 0.94240 1.22982 0.89509 0.98018 0.95013 0.92402 1.60639 1.07434 1.44108 1.19202 1.22205 0.91888 0.91821 1.01162 1.21625 0.94151 1.00757 0.97952 1.19074 0.91981 0.93348 0.97229 1.21292 0.98021 1.03338 1.33023 0.92612 1.25037 0.98824 0.94956 0.95757 1.69974 1.28936 1.10554 1.44126 0.86536 0.82982 0.78847 0.79644 1.19719 1.21060 1.20999 1.22707 0.95212 0.97942 0.98554 0.89322 1.21887 0.98410 0.98709 1.01025 0.91276 0.92207 0.91444 0.90910 0.89413 0.84091 0.95605 0.91440 0.92518 0.93643 0.96814 0.96550 0.93085 0.92655 0.92076 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.42 37.16 0.31 -0.94 16 2 C 0.08 0.83 3.84 -25.95 -0.10 0.73 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 O -0.38 -4.99 11.34 -35.23 -0.40 -5.39 16 5 C 0.05 0.71 7.33 37.94 0.28 0.99 16 6 C 0.06 0.70 3.08 -66.14 -0.20 0.50 16 7 H 0.06 0.76 7.44 -51.93 -0.39 0.38 16 8 N -0.68 -9.76 6.30 -105.07 -0.66 -10.42 16 9 C 0.06 0.99 5.54 -3.83 -0.02 0.97 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.20 13.28 55.43 0.74 -26.46 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.13 -1.30 3.30 -89.05 -0.29 -1.60 16 21 H 0.09 0.88 7.59 -51.93 -0.39 0.49 16 22 C -0.14 -1.30 7.74 37.16 0.29 -1.01 16 23 H 0.07 0.47 7.78 -51.93 -0.40 0.07 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 26 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.34 4.52 8.12 -39.29 -0.32 4.20 16 29 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.46 7.05 -51.92 -0.37 0.09 16 38 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -30.34 303.47 -7.99 -38.33 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.78 Total: -1.45 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -0.43 Total: -15.98 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.07 Total: -36.89 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.40 Total: -5.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.34 -7.99 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405529074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.804 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds