Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.33276 * 2 1 4 4 O 1.44424 * 110.37555 * 237.62665 * 2 1 3 5 5 C 1.44427 * 105.27650 * 200.65761 * 4 2 1 6 6 C 1.54482 * 104.80148 * 40.51527 * 5 4 2 7 7 H 1.09002 * 110.51357 * 94.66392 * 6 5 4 8 8 N 1.46899 * 110.62463 * 217.31702 * 6 5 4 9 9 C 1.46901 * 111.00247 * 271.61222 * 8 6 5 10 10 C 1.52990 * 109.47229 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47347 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00625 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99707 * 180.02562 * 12 11 10 15 15 N 1.31505 * 119.99872 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99690 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47577 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46965 * 120.00255 * 16 14 12 19 19 H 1.48507 * 109.46964 * 239.99796 * 16 14 12 20 20 C 1.54483 * 110.36912 * 122.24933 * 2 1 3 21 21 H 1.09004 * 110.50507 * 261.45634 * 20 2 1 22 22 C 1.52996 * 110.51400 * 24.16504 * 20 2 1 23 23 H 1.08991 * 109.47420 * 297.75403 * 1 2 3 24 24 H 1.09004 * 109.46616 * 57.75690 * 1 2 3 25 25 H 1.08998 * 109.47349 * 177.74678 * 1 2 3 26 26 H 1.08999 * 110.37600 * 281.68204 * 5 4 2 27 27 H 1.09000 * 110.37247 * 159.34210 * 5 4 2 28 28 H 1.00900 * 110.99708 * 147.66069 * 8 6 5 29 29 H 1.09001 * 109.47166 * 300.00554 * 9 8 6 30 30 H 1.09002 * 109.46687 * 60.00174 * 9 8 6 31 31 H 1.09001 * 109.47374 * 300.00274 * 10 9 8 32 32 H 1.09002 * 109.47268 * 60.00377 * 10 9 8 33 33 H 1.09001 * 109.47096 * 300.00431 * 11 10 9 34 34 H 1.09002 * 109.46640 * 59.99978 * 11 10 9 35 35 H 0.97004 * 120.00346 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47342 * 174.64856 * 22 20 2 37 37 H 1.09008 * 109.46965 * 294.64420 * 22 20 2 38 38 H 1.09000 * 109.47242 * 54.63914 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0880 -0.7982 6 6 3.3177 -1.5050 0.6876 7 1 3.1955 -2.5845 0.7761 8 7 4.5209 -1.0640 1.4058 9 6 5.5822 -2.0767 1.3266 10 6 6.8158 -1.5831 2.0849 11 6 7.9214 -2.6375 2.0019 12 6 9.1367 -2.1510 2.7482 13 1 9.1221 -1.1864 3.2336 14 6 10.2676 -2.9374 2.8114 15 7 10.2852 -4.1122 2.2208 16 14 11.7738 -2.3346 3.7371 17 1 11.4988 -0.9922 4.3095 18 1 12.0936 -3.2836 4.8336 19 1 12.9265 -2.2490 2.8047 20 6 2.0677 -0.7728 1.2248 21 1 2.3428 -0.0817 2.0217 22 6 1.0287 -1.7799 1.7218 23 1 -0.3634 0.4785 0.9093 24 1 -0.3633 0.5483 -0.8692 25 1 -0.3634 -1.0268 -0.0404 26 1 4.0526 -0.2334 -0.9217 27 1 3.7243 -1.9238 -1.4114 28 1 4.3069 -0.8389 2.3658 29 1 5.2304 -3.0072 1.7723 30 1 5.8421 -2.2496 0.2823 31 1 7.1677 -0.6524 1.6396 32 1 6.5555 -1.4105 3.1292 33 1 7.5697 -3.5684 2.4469 34 1 8.1815 -2.8097 0.9575 35 1 11.0809 -4.6654 2.2649 36 1 1.4589 -2.3802 2.5233 37 1 0.1553 -1.2460 2.0964 38 1 0.7314 -2.4309 0.8996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405529074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = -89.137708 kcal Electronic energy + Delta-G solvation = -15803.096811 eV Core-core repulsion = 13257.662303 eV Total energy + Delta-G solvation = -2545.434508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94650 -37.47835 -35.51275 -34.52346 -33.21165 -30.79176 -28.59056 -27.36240 -25.98068 -24.33505 -22.21577 -21.98028 -20.71089 -18.49156 -17.52730 -16.88770 -16.69540 -16.51790 -16.18125 -15.62013 -15.18316 -14.51376 -14.29785 -14.00783 -13.92968 -13.31922 -13.30416 -13.16576 -12.78507 -12.70051 -12.65292 -12.48491 -12.14484 -11.83653 -11.75551 -11.57022 -11.51148 -11.34689 -11.05502 -10.69910 -10.56531 -9.46237 -8.20800 -6.31828 1.40107 1.40428 1.54071 2.40725 2.85380 3.12495 3.23022 3.45554 3.74233 3.95227 4.17985 4.21958 4.25856 4.39047 4.44603 4.50466 4.67005 4.69133 4.71332 4.79202 4.92419 4.94393 4.96411 4.99309 5.10672 5.16576 5.23253 5.23710 5.38415 5.51546 5.73911 5.80905 5.85476 6.06518 6.26128 6.42799 6.85478 7.37586 8.91379 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066517 B = 0.004007 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.841664 B = 6985.803538 C = 7055.036083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.070 0.930 4 O -0.392 6.392 5 C 0.053 3.947 6 C 0.055 3.945 7 H 0.054 0.946 8 N -0.678 5.678 9 C 0.072 3.928 10 C -0.092 4.092 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.119 4.119 21 H 0.098 0.902 22 C -0.140 4.140 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.349 0.651 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.052 0.948 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 7.395 -1.560 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.088 0.912 4 O -0.311 6.311 5 C -0.024 4.024 6 C -0.056 4.056 7 H 0.072 0.928 8 N -0.311 5.311 9 C -0.058 4.058 10 C -0.130 4.130 11 C -0.014 4.014 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.138 4.138 21 H 0.116 0.884 22 C -0.197 4.197 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.169 0.831 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.296 7.573 -2.320 20.858 hybrid contribution 1.013 -0.834 0.942 1.616 sum -18.283 6.738 -1.377 19.534 Atomic orbital electron populations 1.21902 0.91747 1.03273 1.03220 1.23140 0.96389 0.95092 0.84118 0.91240 1.89093 1.27453 1.74905 1.39635 1.23415 0.84098 1.00291 0.94600 1.23004 0.89738 0.98077 0.94737 0.92839 1.60527 1.07647 1.42911 1.20034 1.21894 0.91497 0.92305 1.00058 1.21369 0.93913 0.98720 0.98975 1.18985 0.93353 0.94004 0.95051 1.21731 0.99214 1.03673 1.33406 0.92170 1.26008 1.02355 0.95022 0.96620 1.70102 1.30109 1.11860 1.45398 0.85376 0.78543 0.78737 0.78255 1.18531 1.20310 1.20378 1.22698 0.94315 0.98129 0.98646 0.88386 1.21872 0.98677 0.98401 1.00730 0.89138 0.92118 0.91478 0.91768 0.89522 0.83097 0.95739 0.92132 0.92822 0.92876 0.99063 0.99086 0.92770 0.92769 0.90024 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.42 71.98 0.61 -1.49 16 2 C 0.07 1.38 3.84 31.10 0.12 1.50 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 O -0.39 -10.06 11.34 -148.98 -1.69 -11.75 16 5 C 0.05 1.38 7.33 72.49 0.53 1.91 16 6 C 0.05 1.33 3.08 45.93 0.14 1.47 16 7 H 0.05 1.37 7.44 -2.39 -0.02 1.35 16 8 N -0.68 -18.66 6.30 -486.34 -3.06 -21.72 16 9 C 0.07 2.44 5.54 86.30 0.48 2.92 16 10 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 15 N -0.93 -57.47 13.28 21.45 0.28 -57.18 16 16 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 C -0.12 -2.24 3.30 -9.78 -0.03 -2.27 16 21 H 0.10 1.69 7.59 -2.39 -0.02 1.67 16 22 C -0.14 -2.21 7.74 71.98 0.56 -1.65 16 23 H 0.09 0.93 7.78 -2.39 -0.02 0.91 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.99 6.58 -2.39 -0.02 0.98 16 26 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.35 8.64 8.12 -89.69 -0.73 7.91 16 29 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.96 7.05 -2.38 -0.02 0.95 16 38 H 0.05 0.94 7.45 -2.39 -0.02 0.93 16 Total: -1.00 -64.69 303.47 1.25 -63.44 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.28 Total: 11.17 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.41 Total: -30.58 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.78 Total: -78.90 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.69 Total: -11.75 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -64.69 1.25 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405529074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.701 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds