Wall clock time and date at job start Mon Mar 30 2020 04:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47141 * 240.00516 * 2 1 3 5 5 C 1.50706 * 109.47070 * 175.00288 * 4 2 1 6 6 H 1.07991 * 120.00165 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99998 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47200 * 59.99748 * 9 7 5 11 11 H 1.48497 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46830 * 299.99773 * 9 7 5 13 13 N 1.46896 * 109.47153 * 120.00067 * 2 1 3 14 14 C 1.46907 * 110.99805 * 58.95364 * 13 2 1 15 15 C 1.46899 * 111.00152 * 295.00303 * 13 2 1 16 16 C 1.52997 * 109.47254 * 189.99788 * 15 13 2 17 17 H 1.09005 * 109.82538 * 305.70302 * 16 15 13 18 18 C 1.54385 * 109.83407 * 184.81261 * 16 15 13 19 19 C 1.55446 * 102.18803 * 219.18238 * 18 16 15 20 20 C 1.54950 * 100.98975 * 34.03637 * 19 18 16 21 21 O 1.43245 * 109.83212 * 66.58382 * 16 15 13 22 22 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47021 * 299.99948 * 1 2 3 24 24 H 1.09006 * 109.46785 * 59.99479 * 1 2 3 25 25 H 1.09008 * 109.47052 * 294.99899 * 4 2 1 26 26 H 1.09002 * 109.47485 * 54.99865 * 4 2 1 27 27 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47407 * 296.04618 * 14 13 2 29 29 H 1.09006 * 109.46770 * 56.04664 * 14 13 2 30 30 H 1.09003 * 109.46848 * 176.04346 * 14 13 2 31 31 H 1.09002 * 109.47043 * 309.99859 * 15 13 2 32 32 H 1.09001 * 109.47354 * 69.99921 * 15 13 2 33 33 H 1.09000 * 110.84670 * 337.32271 * 18 16 15 34 34 H 1.08998 * 110.84705 * 100.93882 * 18 16 15 35 35 H 1.09001 * 111.06022 * 276.12476 * 19 18 16 36 36 H 1.08996 * 111.18295 * 152.00684 * 19 18 16 37 37 H 1.09001 * 110.30904 * 204.68976 * 20 19 18 38 38 H 1.09005 * 110.39454 * 82.56416 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2306 -1.1934 -2.3578 8 7 3.5766 -1.8384 -3.2990 9 14 6.0921 -1.0610 -2.4368 10 1 6.6846 -1.6861 -1.2271 11 1 6.5873 -1.7621 -3.6486 12 1 6.4845 0.3700 -2.4972 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3788 -0.5663 3.6185 17 1 2.1815 -1.6371 3.6697 18 6 1.9040 0.1165 4.9192 19 6 3.2256 0.2349 5.7290 20 6 4.2496 0.4712 4.5904 21 8 3.7876 -0.3373 3.4966 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 1.7517 -1.7715 -1.2057 26 1 1.6054 -0.2616 -2.1370 27 1 4.0610 -2.2451 -4.0345 28 1 0.4420 -2.0732 1.3346 29 1 1.8168 -2.5950 0.3316 30 1 1.9618 -2.5869 2.1057 31 1 1.9297 1.0869 2.3125 32 1 0.5722 -0.0346 2.5726 33 1 1.4878 1.1020 4.7103 34 1 1.1808 -0.5081 5.4435 35 1 3.4407 -0.6896 6.2651 36 1 3.1945 1.0839 6.4118 37 1 5.2437 0.1519 4.9033 38 1 4.2634 1.5228 4.3041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591028781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:32 Heat of formation + Delta-G solvation = -46.930794 kcal Electronic energy + Delta-G solvation = -16654.163088 eV Core-core repulsion = 14110.558809 eV Total energy + Delta-G solvation = -2543.604279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41852 -37.41707 -32.94070 -31.99909 -31.25248 -29.02865 -27.35763 -26.19225 -24.07403 -22.68870 -21.61141 -20.38507 -18.59654 -16.77847 -16.07722 -15.93271 -15.16320 -14.64466 -14.22434 -14.07672 -13.59652 -13.20156 -12.83742 -12.55591 -12.09149 -11.72704 -11.63098 -11.59802 -11.37752 -11.16730 -11.04369 -10.83986 -10.67418 -10.53443 -10.48114 -10.26311 -9.86315 -9.24228 -9.00365 -8.88490 -8.16248 -7.30750 -5.79914 -3.76772 3.49143 3.51419 3.57549 4.01338 4.50981 4.63438 4.66392 4.84845 5.01914 5.24508 5.32510 5.56914 5.60533 5.63088 5.69652 5.72471 5.77399 5.84440 5.93325 5.97495 6.02612 6.06625 6.12845 6.22388 6.38258 6.54130 6.71284 6.84958 7.05998 7.35942 7.62317 7.80009 8.03535 8.12403 8.22641 8.68468 9.30001 9.84741 11.32190 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025850 B = 0.007897 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.919650 B = 3544.739231 C = 4341.719820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.907 5.907 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.505 5.505 14 C 0.023 3.977 15 C 0.044 3.956 16 C 0.085 3.915 17 H 0.078 0.922 18 C -0.152 4.152 19 C -0.156 4.156 20 C 0.046 3.954 21 O -0.352 6.352 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.012 0.988 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 3.630 16.266 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.548 5.548 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.227 5.227 14 C -0.125 4.125 15 C -0.085 4.085 16 C 0.027 3.973 17 H 0.096 0.904 18 C -0.190 4.190 19 C -0.194 4.194 20 C -0.031 4.031 21 O -0.271 6.271 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.004 3.440 15.898 16.751 hybrid contribution -0.044 0.152 0.126 0.203 sum -4.047 3.592 16.024 16.913 Atomic orbital electron populations 1.22534 1.00047 1.01237 1.00517 1.21937 0.89772 0.98451 0.92055 0.91405 1.19232 0.96440 0.95384 0.89791 1.21183 0.91790 1.32744 1.06859 0.91993 1.24999 0.97999 0.95940 0.96013 1.69962 1.35245 1.37179 1.12445 0.86681 0.86479 0.77958 0.76991 1.20280 1.21776 1.20561 1.62032 1.58824 1.01412 1.00423 1.22445 0.95831 0.91133 1.03074 1.22495 0.95949 0.98749 0.91262 1.22812 0.82011 0.99363 0.93107 0.90447 1.23198 0.97989 1.01800 0.95988 1.23279 0.95181 1.02527 0.98382 1.23355 0.97779 0.95718 0.86235 1.88667 1.21601 1.70887 1.45964 0.92902 0.94314 0.92611 0.96152 0.96455 0.93386 0.96968 0.89781 0.92790 0.91108 0.94948 0.90563 0.90388 0.90643 0.90373 0.90204 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.50 37.16 0.32 -2.96 16 2 C 0.09 1.83 2.29 -67.71 -0.16 1.68 16 3 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 4 C 0.03 0.75 4.27 -27.88 -0.12 0.63 16 5 C -0.49 -14.23 8.84 -34.44 -0.30 -14.54 16 6 H 0.06 1.84 7.74 -52.49 -0.41 1.43 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -28.05 13.29 55.43 0.74 -27.31 16 9 Si 0.89 22.96 29.54 -169.99 -5.02 17.94 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.50 -10.20 4.44 -234.88 -1.04 -11.24 16 14 C 0.02 0.44 8.53 60.07 0.51 0.95 16 15 C 0.04 0.72 3.93 -3.83 -0.02 0.71 16 16 C 0.09 1.26 3.48 -26.01 -0.09 1.16 16 17 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 18 C -0.15 -1.63 6.56 -24.71 -0.16 -1.79 16 19 C -0.16 -1.54 7.16 -24.40 -0.17 -1.71 16 20 C 0.05 0.59 7.78 38.19 0.30 0.88 16 21 O -0.35 -6.13 10.99 -35.23 -0.39 -6.52 16 22 H 0.05 0.93 6.48 -51.93 -0.34 0.60 16 23 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.02 0.56 6.10 -51.92 -0.32 0.25 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.01 0.20 6.51 -51.93 -0.34 -0.13 16 29 H 0.08 1.82 6.03 -51.93 -0.31 1.51 16 30 H 0.05 0.93 6.36 -51.93 -0.33 0.60 16 31 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 32 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 33 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -32.09 294.78 -7.68 -39.77 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.41 Total: -3.46 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 0.01 Total: -13.62 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.31 Total: -38.56 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.39 Total: -6.52 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.09 -7.68 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591028781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.158 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds