Wall clock time and date at job start Mon Mar 30 2020 04:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.52999 * 109.46956 * 119.99995 * 2 1 3 5 5 C 1.50704 * 109.46599 * 182.82611 * 4 2 1 6 6 H 1.08001 * 120.00278 * 355.42398 * 5 4 2 7 7 C 1.37880 * 119.99641 * 175.43122 * 5 4 2 8 8 N 1.31515 * 119.99853 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00229 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47277 * 90.00130 * 9 7 5 11 11 H 1.48503 * 109.47110 * 209.99998 * 9 7 5 12 12 H 1.48504 * 109.47330 * 330.00024 * 9 7 5 13 13 N 1.46899 * 109.46762 * 239.99753 * 2 1 3 14 14 C 1.46906 * 111.00132 * 70.04742 * 13 2 1 15 15 C 1.46893 * 111.00373 * 306.09340 * 13 2 1 16 16 C 1.53004 * 109.47257 * 190.00103 * 15 13 2 17 17 H 1.08994 * 110.32917 * 307.24933 * 16 15 13 18 18 C 1.54475 * 110.36979 * 184.99709 * 16 15 13 19 19 C 1.54513 * 104.06147 * 217.18784 * 18 16 15 20 20 C 1.54478 * 104.06152 * 0.02562 * 19 18 16 21 21 O 1.44420 * 110.37246 * 69.61581 * 16 15 13 22 22 H 1.08998 * 109.47647 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47272 * 300.00133 * 1 2 3 24 24 H 1.09001 * 109.47659 * 60.00132 * 1 2 3 25 25 H 1.08999 * 109.47083 * 302.81950 * 4 2 1 26 26 H 1.08995 * 109.47318 * 62.82777 * 4 2 1 27 27 H 0.96999 * 120.00278 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47074 * 53.50336 * 14 13 2 29 29 H 1.09001 * 109.46573 * 293.51096 * 14 13 2 30 30 H 1.08992 * 109.47093 * 173.50904 * 14 13 2 31 31 H 1.09004 * 109.47157 * 310.00102 * 15 13 2 32 32 H 1.08999 * 109.47279 * 69.99862 * 15 13 2 33 33 H 1.08997 * 110.51935 * 335.83459 * 18 16 15 34 34 H 1.09001 * 110.51090 * 98.55047 * 18 16 15 35 35 H 1.08999 * 110.51133 * 118.64915 * 19 18 16 36 36 H 1.08997 * 110.51069 * 241.21970 * 19 18 16 37 37 H 1.09002 * 110.37345 * 142.81086 * 20 19 18 38 38 H 1.08999 * 110.36915 * 265.03469 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5453 -0.6608 1.2847 6 1 4.0879 -0.2237 0.4594 7 6 4.2300 -1.1637 2.3707 8 7 5.5438 -1.1114 2.4014 9 14 3.2917 -1.9192 3.7983 10 1 3.1075 -3.3726 3.5557 11 1 4.0579 -1.7203 5.0548 12 1 1.9639 -1.2653 3.9193 13 7 2.0196 -0.6926 -1.1994 14 6 1.7538 0.0976 -2.4090 15 6 1.4334 -2.0350 -1.3084 16 6 2.1455 -2.8142 -2.4160 17 1 2.1471 -2.2396 -3.3422 18 6 1.4642 -4.1834 -2.6336 19 6 2.6378 -5.1437 -2.9304 20 6 3.8892 -4.2411 -2.8563 21 8 3.4964 -3.1333 -2.0174 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6359 -0.2374 2.1385 26 1 1.7186 -1.7625 1.2243 27 1 6.0255 -1.4655 3.1652 28 1 2.1595 1.1015 -2.2836 29 1 0.6780 0.1586 -2.5740 30 1 2.2264 -0.3808 -3.2667 31 1 1.5511 -2.5609 -0.3609 32 1 0.3733 -1.9503 -1.5476 33 1 0.9349 -4.4942 -1.7329 34 1 0.7822 -4.1400 -3.4828 35 1 2.6886 -5.9292 -2.1763 36 1 2.5346 -5.5768 -3.9252 37 1 4.7213 -4.7823 -2.4059 38 1 4.1614 -3.8875 -3.8508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591028782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:34 Heat of formation + Delta-G solvation = -65.574676 kcal Electronic energy + Delta-G solvation = -16901.227162 eV Core-core repulsion = 14356.814424 eV Total energy + Delta-G solvation = -2544.412738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52336 -38.92964 -34.92501 -33.15718 -32.78070 -30.95644 -29.41502 -27.26673 -25.60505 -24.10086 -22.71676 -21.78362 -20.24781 -18.73742 -17.39979 -17.09739 -16.49463 -16.39960 -15.70821 -15.55224 -15.14641 -14.59951 -14.45976 -14.13578 -13.83867 -13.49216 -13.15439 -12.99757 -12.69092 -12.64037 -12.51526 -12.38035 -12.06949 -11.84530 -11.69350 -11.52095 -11.39678 -11.31428 -11.09045 -10.64134 -10.51430 -8.79937 -8.12939 -6.10827 1.35817 1.38025 1.48408 2.43916 3.03464 3.19157 3.29931 3.75815 3.91005 4.07104 4.13943 4.22733 4.31595 4.42183 4.46913 4.51671 4.61999 4.69422 4.72853 4.76888 4.88271 4.91664 4.95636 5.05305 5.08199 5.14472 5.15167 5.20759 5.23382 5.32154 5.58946 5.79005 6.15128 6.40374 6.51694 6.60907 6.97728 7.48483 9.05238 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.009968 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.107721 B = 2808.410198 C = 3485.566628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.060 0.940 4 C -0.004 4.004 5 C -0.482 4.482 6 H 0.032 0.968 7 C -0.007 4.007 8 N -0.960 5.960 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.244 1.244 13 N -0.544 5.544 14 C 0.027 3.973 15 C 0.065 3.935 16 C 0.074 3.926 17 H 0.073 0.927 18 C -0.145 4.145 19 C -0.146 4.146 20 C 0.028 3.972 21 O -0.392 6.392 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.022 0.978 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 -5.566 -11.894 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.078 0.922 4 C -0.041 4.041 5 C -0.520 4.520 6 H 0.050 0.950 7 C -0.201 4.201 8 N -0.604 5.604 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.168 1.168 13 N -0.267 5.267 14 C -0.121 4.121 15 C -0.063 4.063 16 C 0.016 3.984 17 H 0.090 0.910 18 C -0.183 4.183 19 C -0.184 4.184 20 C -0.049 4.049 21 O -0.311 6.311 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.338 -5.536 -11.581 17.804 hybrid contribution -0.356 -0.245 0.662 0.791 sum -12.694 -5.781 -10.918 17.714 Atomic orbital electron populations 1.22408 0.96128 1.02196 1.02583 1.21519 0.92584 0.96939 0.90159 0.92211 1.19641 0.94647 0.95555 0.94277 1.21271 0.91778 1.36375 1.02590 0.95007 1.25973 0.95560 0.97013 1.01561 1.70103 1.08436 1.49883 1.31931 0.85766 0.79799 0.79131 0.78505 1.20069 1.21377 1.16752 1.61849 1.59913 1.02515 1.02463 1.22405 0.99332 0.97838 0.92496 1.22156 0.95694 0.89818 0.98582 1.23198 0.82430 0.95969 0.96769 0.90969 1.22982 0.98578 0.93411 1.03353 1.22909 0.93507 0.98224 1.03722 1.23580 0.98381 0.87742 0.95150 1.89435 1.30438 1.51351 1.59883 0.92268 0.91748 0.91364 0.95958 0.96979 0.93260 0.92417 0.94064 0.91553 0.92429 0.91678 0.90955 0.87932 0.90986 0.88001 0.90092 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 8.45 71.98 0.61 -4.58 16 2 C 0.10 3.86 2.28 44.91 0.10 3.96 16 3 H 0.06 2.53 7.98 -2.39 -0.02 2.51 16 4 C 0.00 -0.18 3.44 29.85 0.10 -0.08 16 5 C -0.48 -29.43 9.35 25.60 0.24 -29.19 16 6 H 0.03 2.20 7.93 -2.91 -0.02 2.18 16 7 C -0.01 -0.43 5.47 84.66 0.46 0.03 16 8 N -0.96 -64.41 13.96 21.45 0.30 -64.11 16 9 Si 0.94 47.05 27.56 68.60 1.89 48.94 16 10 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.24 -11.09 6.41 99.48 0.64 -10.45 16 13 N -0.54 -21.28 4.32 -897.05 -3.88 -25.15 16 14 C 0.03 0.82 8.96 127.69 1.14 1.97 16 15 C 0.07 2.24 3.51 86.31 0.30 2.54 16 16 C 0.07 2.31 3.25 31.10 0.10 2.41 16 17 H 0.07 2.04 6.36 -2.39 -0.02 2.03 16 18 C -0.15 -3.30 6.63 31.61 0.21 -3.09 16 19 C -0.15 -3.18 7.09 31.61 0.22 -2.96 16 20 C 0.03 0.82 7.63 72.48 0.55 1.37 16 21 O -0.39 -15.92 11.34 -148.98 -1.69 -17.61 16 22 H 0.06 1.67 6.56 -2.39 -0.02 1.66 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.80 16 24 H 0.07 1.71 6.83 -2.39 -0.02 1.70 16 25 H 0.02 1.06 6.88 -2.39 -0.02 1.05 16 26 H 0.01 0.59 5.91 -2.39 -0.01 0.57 16 27 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 28 H 0.06 1.79 8.00 -2.39 -0.02 1.77 16 29 H 0.04 1.02 6.88 -2.39 -0.02 1.01 16 30 H 0.07 1.90 6.46 -2.39 -0.02 1.88 16 31 H 0.06 2.35 6.04 -2.38 -0.01 2.33 16 32 H 0.07 1.80 6.81 -2.39 -0.02 1.78 16 33 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.52 291.54 1.62 -73.90 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.94 Total: 11.65 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.05 Total: -27.62 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.58 Total: -89.27 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -1.69 Total: -17.61 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.89 Total: 48.94 kcal Total: -75.52 1.62 -73.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591028782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.328 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds