Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47518 * 2 1 4 4 C 1.53003 * 109.46836 * 120.00161 * 2 1 3 5 5 C 1.50707 * 109.47097 * 184.00447 * 4 2 1 6 6 H 1.08005 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00037 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47069 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47083 * 300.00004 * 9 7 5 12 12 H 1.48497 * 109.47173 * 60.00336 * 9 7 5 13 13 N 1.46900 * 109.47215 * 239.99824 * 2 1 3 14 14 C 1.46849 * 111.00027 * 70.61336 * 13 2 1 15 15 C 1.53037 * 109.52254 * 174.16103 * 14 13 2 16 16 H 1.09002 * 109.50351 * 299.19788 * 15 14 13 17 17 C 1.53002 * 109.50210 * 179.11864 * 15 14 13 18 18 C 1.53113 * 109.28062 * 59.17770 * 15 14 13 19 19 C 1.53125 * 109.16230 * 302.34708 * 18 15 14 20 20 H 1.08999 * 109.50143 * 297.70973 * 19 18 15 21 21 O 1.42896 * 109.50349 * 177.63449 * 19 18 15 22 22 C 1.46846 * 111.00263 * 306.40208 * 13 2 1 23 23 H 1.09001 * 109.47277 * 60.00091 * 1 2 3 24 24 H 1.09005 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47287 * 300.00119 * 1 2 3 26 26 H 1.08997 * 109.47553 * 64.00464 * 4 2 1 27 27 H 1.09001 * 109.46865 * 303.99906 * 4 2 1 28 28 H 0.97005 * 120.00220 * 0.02562 * 8 7 5 29 29 H 1.09000 * 109.45995 * 294.17409 * 14 13 2 30 30 H 1.08999 * 109.45825 * 54.15285 * 14 13 2 31 31 H 1.09003 * 109.46852 * 59.99730 * 17 15 14 32 32 H 1.08997 * 109.47091 * 179.97438 * 17 15 14 33 33 H 1.08996 * 109.47019 * 300.00180 * 17 15 14 34 34 H 1.09007 * 109.52372 * 62.25131 * 18 15 14 35 35 H 1.08997 * 109.52647 * 182.37303 * 18 15 14 36 36 H 0.96698 * 113.99743 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.46418 * 305.85820 * 22 13 2 38 38 H 1.09000 * 109.46173 * 65.81744 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5437 -0.6360 1.2999 6 1 4.0818 -0.1193 0.5190 7 6 4.2324 -1.2174 2.3432 8 7 3.5770 -1.8461 3.2945 9 14 6.0964 -1.1123 2.4056 10 1 6.5913 -1.8112 3.6189 11 1 6.6692 -1.7546 1.1954 12 1 6.5105 0.3130 2.4526 13 7 2.0196 -0.6925 -1.1994 14 6 1.7660 0.1035 -2.4071 15 6 2.4157 -0.5772 -3.6140 16 1 3.4924 -0.6445 -3.4579 17 6 2.1325 0.2409 -4.8755 18 6 1.8328 -1.9838 -3.7755 19 6 2.0676 -2.7762 -2.4864 20 1 3.1387 -2.8788 -2.3123 21 8 1.4780 -4.0721 -2.6089 22 6 1.4280 -2.0318 -1.3123 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7363 -1.7676 1.2141 27 1 1.6191 -0.2505 2.1378 28 1 2.6091 -1.9011 3.2619 29 1 0.6913 0.1834 -2.5702 30 1 2.1894 1.0999 -2.2808 31 1 2.5446 1.2433 -4.7586 32 1 2.5958 -0.2441 -5.7347 33 1 1.0558 0.3067 -5.0318 34 1 0.7626 -1.9145 -3.9707 35 1 2.3230 -2.4879 -4.6084 36 1 1.5888 -4.6301 -1.8270 37 1 1.6057 -2.5862 -0.3907 38 1 0.3549 -1.9418 -1.4804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591040815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = -69.974795 kcal Electronic energy + Delta-G solvation = -16954.223298 eV Core-core repulsion = 14409.619757 eV Total energy + Delta-G solvation = -2544.603542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.41925 -36.39720 -35.07585 -32.83737 -30.60566 -29.40152 -27.03353 -26.40050 -23.96496 -22.64502 -21.83165 -19.72321 -18.88649 -16.92818 -16.63284 -15.67416 -15.00256 -14.41569 -14.17827 -13.75156 -13.63778 -13.18362 -12.92708 -12.79628 -12.59018 -12.01500 -11.79876 -11.58005 -11.38881 -11.20901 -11.04350 -10.76856 -10.61152 -10.43149 -10.28098 -10.03816 -9.99566 -9.65248 -9.36038 -8.47156 -8.23043 -7.54737 -6.23231 -3.88812 3.50292 3.52423 3.70861 4.16897 4.56062 4.64106 5.02147 5.05968 5.23576 5.32404 5.50921 5.52169 5.63462 5.65187 5.70993 5.78187 5.79966 5.84953 5.91749 6.00829 6.02476 6.17953 6.20822 6.28593 6.37757 6.46561 6.57579 6.58717 6.82077 7.24921 7.42398 7.69139 7.87023 7.92292 8.37182 8.65116 9.02077 9.79942 11.16824 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.008172 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.559822 B = 3425.305675 C = 3506.953068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.095 3.905 3 H 0.071 0.929 4 C 0.017 3.983 5 C -0.571 4.571 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.923 5.923 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.506 5.506 14 C 0.057 3.943 15 C -0.088 4.088 16 H 0.081 0.919 17 C -0.142 4.142 18 C -0.103 4.103 19 C 0.105 3.895 20 H 0.066 0.934 21 O -0.574 6.574 22 C 0.029 3.971 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.265 0.735 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.379 0.621 37 H 0.084 0.916 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 1.576 -12.747 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.013 4.013 3 H 0.090 0.910 4 C -0.020 4.020 5 C -0.610 4.610 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.561 5.561 9 Si 0.896 3.104 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.217 1.217 13 N -0.230 5.230 14 C -0.072 4.072 15 C -0.107 4.107 16 H 0.100 0.900 17 C -0.200 4.200 18 C -0.141 4.141 19 C 0.046 3.954 20 H 0.084 0.916 21 O -0.380 6.380 22 C -0.100 4.100 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.102 0.898 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.673 1.310 -12.401 12.753 hybrid contribution -2.150 0.368 -0.370 2.212 sum -4.823 1.678 -12.771 13.754 Atomic orbital electron populations 1.22544 0.99732 1.01344 1.00819 1.21748 0.89920 0.98242 0.91375 0.91040 1.19318 0.97530 0.94588 0.90538 1.21951 0.91267 1.37752 1.09999 0.92761 1.25772 1.06653 0.94036 0.92948 1.70800 1.09877 1.41335 1.34041 0.83564 0.74867 0.76115 0.75823 1.21130 1.21588 1.21684 1.61925 1.58311 1.01385 1.01418 1.22170 0.97458 0.97247 0.90305 1.21112 1.01370 0.93840 0.94375 0.90018 1.21755 1.01344 0.99873 0.97009 1.21548 1.01193 0.94722 0.96610 1.21813 0.96802 0.82096 0.94668 0.91638 1.86411 1.81220 1.26436 1.43895 1.22728 0.96013 0.91950 0.99266 0.93934 0.92907 0.92543 0.97387 0.97338 0.92490 0.95638 0.91055 0.92465 0.92633 0.92979 0.92024 0.91697 0.77388 0.89773 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 8.44 37.15 0.31 -2.91 16 2 C 0.10 1.95 2.26 -67.71 -0.15 1.79 16 3 H 0.07 1.50 7.98 -51.93 -0.41 1.09 16 4 C 0.02 0.43 3.68 -27.88 -0.10 0.33 16 5 C -0.57 -16.05 8.81 -34.44 -0.30 -16.35 16 6 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.01 0.23 5.46 -17.82 -0.10 0.13 16 8 N -0.92 -28.36 13.65 55.43 0.76 -27.60 16 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.51 -9.64 4.29 -226.70 -0.97 -10.62 16 14 C 0.06 0.89 4.42 -3.83 -0.02 0.87 16 15 C -0.09 -1.21 2.88 -90.54 -0.26 -1.48 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.14 -1.55 9.20 37.16 0.34 -1.21 16 18 C -0.10 -1.47 4.94 -26.61 -0.13 -1.60 16 19 C 0.11 1.70 3.63 -26.65 -0.10 1.60 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 21 O -0.57 -8.78 13.32 -35.23 -0.47 -9.25 16 22 C 0.03 0.52 4.16 -3.84 -0.02 0.50 16 23 H 0.04 0.66 6.84 -51.93 -0.36 0.31 16 24 H 0.05 0.92 6.45 -51.93 -0.34 0.58 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.01 0.21 6.15 -51.93 -0.32 -0.11 16 27 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 28 H 0.26 8.10 7.22 -40.82 -0.29 7.81 16 29 H 0.03 0.39 6.89 -51.93 -0.36 0.03 16 30 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.38 4.58 9.08 45.56 0.41 5.00 16 37 H 0.08 1.70 6.17 -51.93 -0.32 1.38 16 38 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -30.97 292.62 -7.62 -38.59 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.74 Total: 2.09 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.52 Total: -18.32 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.22 Total: -38.22 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.47 Total: -9.25 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.97 -7.62 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.387 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds