Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47518 * 2 1 4 4 C 1.53003 * 109.46836 * 120.00161 * 2 1 3 5 5 C 1.50707 * 109.47097 * 184.00447 * 4 2 1 6 6 H 1.08005 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00037 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47069 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47083 * 300.00004 * 9 7 5 12 12 H 1.48497 * 109.47173 * 60.00336 * 9 7 5 13 13 N 1.46900 * 109.47215 * 239.99824 * 2 1 3 14 14 C 1.46849 * 111.00027 * 70.61336 * 13 2 1 15 15 C 1.53037 * 109.52254 * 174.16103 * 14 13 2 16 16 H 1.09002 * 109.50351 * 299.19788 * 15 14 13 17 17 C 1.53002 * 109.50210 * 179.11864 * 15 14 13 18 18 C 1.53113 * 109.28062 * 59.17770 * 15 14 13 19 19 C 1.53125 * 109.16230 * 302.34708 * 18 15 14 20 20 H 1.08999 * 109.50143 * 297.70973 * 19 18 15 21 21 O 1.42896 * 109.50349 * 177.63449 * 19 18 15 22 22 C 1.46846 * 111.00263 * 306.40208 * 13 2 1 23 23 H 1.09001 * 109.47277 * 60.00091 * 1 2 3 24 24 H 1.09005 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47287 * 300.00119 * 1 2 3 26 26 H 1.08997 * 109.47553 * 64.00464 * 4 2 1 27 27 H 1.09001 * 109.46865 * 303.99906 * 4 2 1 28 28 H 0.97005 * 120.00220 * 0.02562 * 8 7 5 29 29 H 1.09000 * 109.45995 * 294.17409 * 14 13 2 30 30 H 1.08999 * 109.45825 * 54.15285 * 14 13 2 31 31 H 1.09003 * 109.46852 * 59.99730 * 17 15 14 32 32 H 1.08997 * 109.47091 * 179.97438 * 17 15 14 33 33 H 1.08996 * 109.47019 * 300.00180 * 17 15 14 34 34 H 1.09007 * 109.52372 * 62.25131 * 18 15 14 35 35 H 1.08997 * 109.52647 * 182.37303 * 18 15 14 36 36 H 0.96698 * 113.99743 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.46418 * 305.85820 * 22 13 2 38 38 H 1.09000 * 109.46173 * 65.81744 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5437 -0.6360 1.2999 6 1 4.0818 -0.1193 0.5190 7 6 4.2324 -1.2174 2.3432 8 7 3.5770 -1.8461 3.2945 9 14 6.0964 -1.1123 2.4056 10 1 6.5913 -1.8112 3.6189 11 1 6.6692 -1.7546 1.1954 12 1 6.5105 0.3130 2.4526 13 7 2.0196 -0.6925 -1.1994 14 6 1.7660 0.1035 -2.4071 15 6 2.4157 -0.5772 -3.6140 16 1 3.4924 -0.6445 -3.4579 17 6 2.1325 0.2409 -4.8755 18 6 1.8328 -1.9838 -3.7755 19 6 2.0676 -2.7762 -2.4864 20 1 3.1387 -2.8788 -2.3123 21 8 1.4780 -4.0721 -2.6089 22 6 1.4280 -2.0318 -1.3123 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7363 -1.7676 1.2141 27 1 1.6191 -0.2505 2.1378 28 1 2.6091 -1.9011 3.2619 29 1 0.6913 0.1834 -2.5702 30 1 2.1894 1.0999 -2.2808 31 1 2.5446 1.2433 -4.7586 32 1 2.5958 -0.2441 -5.7347 33 1 1.0558 0.3067 -5.0318 34 1 0.7626 -1.9145 -3.9707 35 1 2.3230 -2.4879 -4.6084 36 1 1.5888 -4.6301 -1.8270 37 1 1.6057 -2.5862 -0.3907 38 1 0.3549 -1.9418 -1.4804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591040815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = -92.093100 kcal Electronic energy + Delta-G solvation = -16955.182420 eV Core-core repulsion = 14409.619757 eV Total energy + Delta-G solvation = -2545.562663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78418 -37.80113 -36.42209 -34.84478 -32.02774 -30.81508 -28.86886 -27.54679 -25.54947 -24.57421 -23.08605 -21.07429 -20.36533 -18.78903 -18.18369 -17.11028 -16.30066 -15.71451 -15.64294 -15.52294 -15.13824 -14.93656 -14.48803 -14.08539 -13.81415 -13.46052 -13.04093 -12.95805 -12.84537 -12.75328 -12.57805 -12.51980 -12.20526 -11.93373 -11.67717 -11.55761 -11.46355 -11.13699 -10.83961 -10.60579 -10.46187 -9.01853 -8.56359 -6.22119 1.53821 1.62261 1.81059 2.61672 2.85070 3.25213 3.34732 3.80910 3.84600 3.99523 4.06157 4.17201 4.28176 4.31908 4.39740 4.51789 4.58506 4.66268 4.76425 4.77027 4.85361 4.92144 4.97556 5.01720 5.06014 5.09222 5.18985 5.26194 5.33563 5.46475 5.50273 6.09883 6.27762 6.32457 6.38674 6.72930 6.74257 7.55020 8.84249 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.008172 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.559822 B = 3425.305675 C = 3506.953068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.066 0.934 4 C 0.021 3.979 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.046 4.046 8 N -0.949 5.949 9 Si 1.113 2.887 10 H -0.288 1.288 11 H -0.273 1.273 12 H -0.271 1.271 13 N -0.527 5.527 14 C 0.057 3.943 15 C -0.083 4.083 16 H 0.068 0.932 17 C -0.135 4.135 18 C -0.098 4.098 19 C 0.109 3.891 20 H 0.049 0.951 21 O -0.578 6.578 22 C 0.037 3.963 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.058 0.942 26 H -0.009 1.009 27 H -0.013 1.013 28 H 0.251 0.749 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.390 0.610 37 H 0.051 0.949 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 2.305 -14.873 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 H 0.084 0.916 4 C -0.016 4.016 5 C -0.613 4.613 6 H 0.068 0.932 7 C -0.242 4.242 8 N -0.588 5.588 9 Si 0.936 3.064 10 H -0.214 1.214 11 H -0.199 1.199 12 H -0.197 1.197 13 N -0.252 5.252 14 C -0.071 4.071 15 C -0.102 4.102 16 H 0.087 0.913 17 C -0.193 4.193 18 C -0.135 4.135 19 C 0.050 3.950 20 H 0.067 0.933 21 O -0.384 6.384 22 C -0.092 4.092 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.009 0.991 27 H 0.005 0.995 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.070 0.930 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.553 2.044 -14.546 14.910 hybrid contribution -2.227 0.121 0.299 2.250 sum -4.780 2.166 -14.247 15.183 Atomic orbital electron populations 1.22399 0.97180 1.01560 1.02191 1.21485 0.91942 0.97103 0.90191 0.91579 1.19216 0.96172 0.93966 0.92276 1.22260 0.92870 1.36781 1.09430 0.93190 1.27227 1.10858 0.93413 0.92657 1.70932 1.09185 1.43329 1.35354 0.82968 0.69956 0.77241 0.76239 1.21361 1.19895 1.19661 1.61829 1.59068 1.02097 1.02207 1.22267 0.98412 0.97010 0.89412 1.21097 1.00286 0.93938 0.94927 0.91305 1.21704 1.02140 0.99765 0.95658 1.21545 1.01686 0.94660 0.95646 1.21750 0.95604 0.82532 0.95102 0.93332 1.86391 1.81041 1.26207 1.44803 1.22618 0.96488 0.91446 0.98599 0.91405 0.93238 0.92284 0.99080 0.99528 0.93921 0.94493 0.90847 0.91739 0.91264 0.92117 0.91502 0.90375 0.76043 0.93041 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 8.44 71.98 0.61 -5.27 16 2 C 0.10 4.13 2.26 44.91 0.10 4.23 16 3 H 0.07 2.75 7.98 -2.39 -0.02 2.73 16 4 C 0.02 1.08 3.68 29.85 0.11 1.19 16 5 C -0.58 -32.85 8.81 25.60 0.23 -32.63 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C -0.05 -2.70 5.46 84.65 0.46 -2.23 16 8 N -0.95 -59.73 13.65 21.45 0.29 -59.44 16 9 Si 1.11 51.80 29.90 68.60 2.05 53.86 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 N -0.53 -19.80 4.29 -871.13 -3.74 -23.53 16 14 C 0.06 1.66 4.42 86.33 0.38 2.04 16 15 C -0.08 -2.10 2.88 -10.74 -0.03 -2.13 16 16 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.13 -2.48 9.20 71.98 0.66 -1.81 16 18 C -0.10 -2.55 4.94 30.67 0.15 -2.40 16 19 C 0.11 3.44 3.63 30.65 0.11 3.55 16 20 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 21 O -0.58 -17.02 13.32 -148.98 -1.98 -19.00 16 22 C 0.04 1.32 4.16 86.32 0.36 1.68 16 23 H 0.07 1.94 6.84 -2.39 -0.02 1.93 16 24 H 0.05 1.69 6.45 -2.38 -0.02 1.67 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H -0.01 -0.49 6.15 -2.39 -0.01 -0.51 16 27 H -0.01 -0.75 8.01 -2.39 -0.02 -0.76 16 28 H 0.25 16.02 7.22 -92.70 -0.67 15.35 16 29 H 0.04 1.01 6.89 -2.39 -0.02 1.00 16 30 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.39 9.28 9.08 -74.06 -0.67 8.61 16 37 H 0.05 2.15 6.17 -2.39 -0.01 2.14 16 38 H 0.04 1.27 6.57 -2.39 -0.02 1.25 16 Total: -1.00 -66.58 292.62 0.21 -66.37 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.45 Total: 15.53 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 3.14 Total: -33.78 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.44 Total: -82.97 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.98 Total: -19.00 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.86 kcal Total: -66.58 0.21 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.724 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds