Wall clock time and date at job start Mon Mar 30 2020 04:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47038 * 2 1 4 4 C 1.53002 * 109.47066 * 239.99964 * 2 1 3 5 5 C 1.50698 * 109.47074 * 175.68683 * 4 2 1 6 6 H 1.08000 * 120.00123 * 354.99084 * 5 4 2 7 7 C 1.37876 * 119.99780 * 174.99115 * 5 4 2 8 8 N 1.31503 * 120.00250 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 60.00055 * 9 7 5 11 11 H 1.48501 * 109.47359 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47477 * 300.00086 * 9 7 5 13 13 N 1.46898 * 109.47055 * 119.99975 * 2 1 3 14 14 C 1.47839 * 111.00382 * 298.83484 * 13 2 1 15 15 C 1.54906 * 104.80052 * 146.36173 * 14 13 2 16 16 C 1.55145 * 101.65233 * 322.92983 * 15 14 13 17 17 H 1.09000 * 110.85234 * 277.19971 * 16 15 14 18 18 C 1.52997 * 110.70699 * 154.03696 * 16 15 14 19 19 C 1.52997 * 109.47287 * 71.40108 * 18 16 15 20 20 O 1.42896 * 109.47319 * 180.02562 * 19 18 16 21 21 C 1.47450 * 110.99781 * 59.67513 * 13 2 1 22 22 H 1.09003 * 109.47008 * 306.16296 * 1 2 3 23 23 H 1.09006 * 109.47206 * 66.15810 * 1 2 3 24 24 H 1.08999 * 109.47337 * 186.15859 * 1 2 3 25 25 H 1.08993 * 109.46988 * 295.69030 * 4 2 1 26 26 H 1.09007 * 109.46750 * 55.68893 * 4 2 1 27 27 H 0.97003 * 120.00504 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.37062 * 265.19574 * 14 13 2 29 29 H 1.09003 * 110.37586 * 27.52933 * 14 13 2 30 30 H 1.09002 * 110.99049 * 204.83739 * 15 14 13 31 31 H 1.09001 * 110.98976 * 81.01928 * 15 14 13 32 32 H 1.09001 * 109.46626 * 311.39694 * 18 16 15 33 33 H 1.08994 * 109.47047 * 191.40103 * 18 16 15 34 34 H 1.09007 * 109.46964 * 299.99797 * 19 18 16 35 35 H 1.08992 * 109.47195 * 59.99801 * 19 18 16 36 36 H 0.96698 * 114.00099 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.88976 * 117.33371 * 21 13 2 38 38 H 1.09004 * 109.88547 * 356.14576 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5432 -0.6294 -1.3038 6 1 4.0753 -0.0410 -0.5709 7 6 4.2393 -1.2965 -2.2895 8 7 3.5914 -2.0125 -3.1822 9 14 6.1025 -1.1820 -2.3576 10 1 6.6773 -1.7084 -1.0935 11 1 6.6063 -1.9839 -3.5015 12 1 6.5054 0.2367 -2.5315 13 7 2.0197 -0.6925 1.1994 14 6 1.5687 -0.0061 2.4288 15 6 1.3541 -1.1419 3.4600 16 6 0.7783 -2.2719 2.5663 17 1 -0.2935 -2.1408 2.4174 18 6 1.0744 -3.6451 3.1727 19 6 0.2117 -3.8486 4.4197 20 8 0.4886 -5.1309 4.9864 21 6 1.5405 -2.0864 1.2374 22 1 -0.3633 0.6064 0.8297 23 1 -0.3634 0.4154 -0.9400 24 1 -0.3634 -1.0217 0.1102 25 1 1.7411 -1.7687 -1.2114 26 1 1.6149 -0.2539 -2.1376 27 1 4.0811 -2.4822 -3.8754 28 1 2.3345 0.6855 2.7798 29 1 0.6333 0.5229 2.2467 30 1 0.6362 -0.8447 4.2245 31 1 2.2995 -1.4440 3.9107 32 1 2.1279 -3.7018 3.4463 33 1 0.8463 -4.4215 2.4425 34 1 0.4398 -3.0721 5.1500 35 1 -0.8418 -3.7918 4.1460 36 1 -0.0237 -5.3280 5.7825 37 1 2.3877 -2.7710 1.1971 38 1 0.8712 -2.2714 0.3971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593014741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:01 Heat of formation + Delta-G solvation = -60.458013 kcal Electronic energy + Delta-G solvation = -16467.636010 eV Core-core repulsion = 13923.445148 eV Total energy + Delta-G solvation = -2544.190863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.25235 -37.05376 -34.60608 -32.51704 -30.95984 -28.33954 -27.43282 -27.05503 -23.19134 -22.70271 -21.27746 -20.00057 -18.49409 -17.38458 -16.31140 -16.08503 -15.27932 -14.50452 -14.38682 -14.01207 -13.56527 -13.28151 -13.01976 -12.33928 -12.09409 -11.78879 -11.68538 -11.46968 -11.32612 -11.17383 -10.84256 -10.62366 -10.54783 -10.43199 -10.34306 -10.23576 -9.99635 -9.87259 -9.09421 -8.98233 -8.21869 -7.39293 -5.85136 -3.82856 3.44040 3.47397 3.51527 4.10882 4.59545 4.68436 4.82731 5.01485 5.04812 5.22099 5.35103 5.47372 5.52728 5.62332 5.70713 5.83172 5.84791 5.93187 6.02864 6.07271 6.12613 6.15878 6.23730 6.39387 6.52630 6.56172 6.69000 6.80227 7.02170 7.50203 7.57112 7.73398 7.90184 8.06771 8.16393 8.61657 9.22458 9.78614 11.26869 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027122 B = 0.006735 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.131355 B = 4156.189507 C = 4603.530962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.501 5.501 14 C 0.033 3.967 15 C -0.123 4.123 16 C -0.109 4.109 17 H 0.070 0.930 18 C -0.108 4.108 19 C 0.077 3.923 20 O -0.576 6.576 21 C 0.055 3.945 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.023 0.977 26 H 0.014 0.986 27 H 0.258 0.742 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.375 0.625 37 H 0.076 0.924 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -0.420 14.303 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.224 5.224 14 C -0.094 4.094 15 C -0.161 4.161 16 C -0.129 4.129 17 H 0.088 0.912 18 C -0.146 4.146 19 C -0.001 4.001 20 O -0.381 6.381 21 C -0.073 4.073 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.221 0.779 37 H 0.094 0.906 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.426 -0.535 13.589 15.495 hybrid contribution -0.310 0.083 0.347 0.473 sum -7.736 -0.451 13.936 15.946 Atomic orbital electron populations 1.22569 0.99907 1.01048 1.00869 1.22037 0.89912 0.98580 0.92394 0.91320 1.19235 0.96406 0.95556 0.89723 1.21120 0.91664 1.28784 1.11286 0.92289 1.24990 0.98027 0.95809 0.95995 1.69948 1.35282 1.32722 1.16606 0.86692 0.86400 0.77817 0.77238 1.20361 1.21667 1.20510 1.63738 1.56799 1.00963 1.00863 1.23105 0.98779 0.96587 0.90969 1.22781 1.00734 0.95471 0.97146 1.22413 0.99776 0.93874 0.96793 0.91193 1.21487 1.00516 0.96935 0.95675 1.22256 0.98161 0.84224 0.95457 1.86507 1.68634 1.36329 1.46634 1.22784 0.98196 0.91693 0.94589 0.93948 0.92530 0.92947 0.95861 0.96752 0.93288 0.91120 0.93872 0.91928 0.90804 0.90816 0.91114 0.93732 0.94015 0.77862 0.90598 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.59 37.16 0.32 -2.88 16 2 C 0.08 1.64 2.33 -67.71 -0.16 1.48 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.72 4.28 -27.88 -0.12 0.60 16 5 C -0.49 -13.98 8.82 -34.44 -0.30 -14.28 16 6 H 0.06 1.69 7.75 -52.49 -0.41 1.28 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -27.61 13.28 55.43 0.74 -26.87 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.50 -9.75 4.90 -223.29 -1.09 -10.85 16 14 C 0.03 0.52 6.49 -2.30 -0.01 0.50 16 15 C -0.12 -1.62 5.92 -24.59 -0.15 -1.76 16 16 C -0.11 -1.52 2.92 -88.80 -0.26 -1.77 16 17 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.11 -1.42 4.94 -26.73 -0.13 -1.56 16 19 C 0.08 0.83 6.94 37.16 0.26 1.09 16 20 O -0.58 -6.52 13.66 -35.23 -0.48 -7.00 16 21 C 0.06 1.01 5.04 -2.83 -0.01 0.99 16 22 H 0.04 0.64 6.29 -51.93 -0.33 0.32 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.89 6.15 -51.93 -0.32 0.57 16 25 H 0.02 0.64 6.41 -51.93 -0.33 0.30 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.64 5.70 -51.93 -0.30 0.34 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 32 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.43 7.68 -51.92 -0.40 0.03 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.34 9.12 45.56 0.42 2.76 16 37 H 0.08 1.53 7.82 -51.93 -0.41 1.12 16 38 H 0.06 1.20 4.82 -51.93 -0.25 0.95 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -31.71 295.53 -7.74 -39.45 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.67 Total: -0.40 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.67 Total: -16.20 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.36 Total: -37.72 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.48 Total: -7.00 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.71 -7.74 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593014741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.005 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds