Wall clock time and date at job start Mon Mar 30 2020 04:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47038 * 2 1 4 4 C 1.53002 * 109.47066 * 239.99964 * 2 1 3 5 5 C 1.50698 * 109.47074 * 175.68683 * 4 2 1 6 6 H 1.08000 * 120.00123 * 354.99084 * 5 4 2 7 7 C 1.37876 * 119.99780 * 174.99115 * 5 4 2 8 8 N 1.31503 * 120.00250 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 60.00055 * 9 7 5 11 11 H 1.48501 * 109.47359 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47477 * 300.00086 * 9 7 5 13 13 N 1.46898 * 109.47055 * 119.99975 * 2 1 3 14 14 C 1.47839 * 111.00382 * 298.83484 * 13 2 1 15 15 C 1.54906 * 104.80052 * 146.36173 * 14 13 2 16 16 C 1.55145 * 101.65233 * 322.92983 * 15 14 13 17 17 H 1.09000 * 110.85234 * 277.19971 * 16 15 14 18 18 C 1.52997 * 110.70699 * 154.03696 * 16 15 14 19 19 C 1.52997 * 109.47287 * 71.40108 * 18 16 15 20 20 O 1.42896 * 109.47319 * 180.02562 * 19 18 16 21 21 C 1.47450 * 110.99781 * 59.67513 * 13 2 1 22 22 H 1.09003 * 109.47008 * 306.16296 * 1 2 3 23 23 H 1.09006 * 109.47206 * 66.15810 * 1 2 3 24 24 H 1.08999 * 109.47337 * 186.15859 * 1 2 3 25 25 H 1.08993 * 109.46988 * 295.69030 * 4 2 1 26 26 H 1.09007 * 109.46750 * 55.68893 * 4 2 1 27 27 H 0.97003 * 120.00504 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.37062 * 265.19574 * 14 13 2 29 29 H 1.09003 * 110.37586 * 27.52933 * 14 13 2 30 30 H 1.09002 * 110.99049 * 204.83739 * 15 14 13 31 31 H 1.09001 * 110.98976 * 81.01928 * 15 14 13 32 32 H 1.09001 * 109.46626 * 311.39694 * 18 16 15 33 33 H 1.08994 * 109.47047 * 191.40103 * 18 16 15 34 34 H 1.09007 * 109.46964 * 299.99797 * 19 18 16 35 35 H 1.08992 * 109.47195 * 59.99801 * 19 18 16 36 36 H 0.96698 * 114.00099 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.88976 * 117.33371 * 21 13 2 38 38 H 1.09004 * 109.88547 * 356.14576 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5432 -0.6294 -1.3038 6 1 4.0753 -0.0410 -0.5709 7 6 4.2393 -1.2965 -2.2895 8 7 3.5914 -2.0125 -3.1822 9 14 6.1025 -1.1820 -2.3576 10 1 6.6773 -1.7084 -1.0935 11 1 6.6063 -1.9839 -3.5015 12 1 6.5054 0.2367 -2.5315 13 7 2.0197 -0.6925 1.1994 14 6 1.5687 -0.0061 2.4288 15 6 1.3541 -1.1419 3.4600 16 6 0.7783 -2.2719 2.5663 17 1 -0.2935 -2.1408 2.4174 18 6 1.0744 -3.6451 3.1727 19 6 0.2117 -3.8486 4.4197 20 8 0.4886 -5.1309 4.9864 21 6 1.5405 -2.0864 1.2374 22 1 -0.3633 0.6064 0.8297 23 1 -0.3634 0.4154 -0.9400 24 1 -0.3634 -1.0217 0.1102 25 1 1.7411 -1.7687 -1.2114 26 1 1.6149 -0.2539 -2.1376 27 1 4.0811 -2.4822 -3.8754 28 1 2.3345 0.6855 2.7798 29 1 0.6333 0.5229 2.2467 30 1 0.6362 -0.8447 4.2245 31 1 2.2995 -1.4440 3.9107 32 1 2.1279 -3.7018 3.4463 33 1 0.8463 -4.4215 2.4425 34 1 0.4398 -3.0721 5.1500 35 1 -0.8418 -3.7918 4.1460 36 1 -0.0237 -5.3280 5.7825 37 1 2.3877 -2.7710 1.1971 38 1 0.8712 -2.2714 0.3971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593014741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:00 Heat of formation + Delta-G solvation = -83.985974 kcal Electronic energy + Delta-G solvation = -16468.656259 eV Core-core repulsion = 13923.445148 eV Total energy + Delta-G solvation = -2545.211112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60789 -37.97749 -36.09246 -34.47330 -32.36754 -29.66822 -29.30041 -28.32267 -25.16634 -23.77412 -22.73843 -21.12433 -20.09120 -18.38012 -18.22589 -17.60682 -16.54574 -16.18469 -15.74588 -15.10839 -15.05332 -14.51626 -14.36247 -14.15152 -13.59066 -13.26727 -13.25853 -12.95837 -12.68651 -12.65109 -12.52684 -12.33793 -12.20270 -11.73796 -11.67227 -11.50971 -11.43367 -11.12812 -10.97997 -10.81151 -10.48177 -8.86394 -8.10979 -6.16092 1.40115 1.43435 1.50759 2.46461 3.17519 3.26198 3.36916 3.71354 3.84663 4.06947 4.22551 4.28278 4.41040 4.43244 4.52423 4.56705 4.59343 4.60851 4.74644 4.82043 4.98018 5.02842 5.07236 5.13699 5.15575 5.22364 5.29182 5.32084 5.46689 5.49879 5.71112 5.89101 6.32643 6.40173 6.57075 6.95078 6.97229 7.49606 9.00828 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027122 B = 0.006735 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.131355 B = 4156.189507 C = 4603.530962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.502 4.502 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.529 5.529 14 C 0.032 3.968 15 C -0.112 4.112 16 C -0.094 4.094 17 H 0.088 0.912 18 C -0.108 4.108 19 C 0.082 3.918 20 O -0.599 6.599 21 C 0.056 3.944 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.052 0.948 25 H -0.002 1.002 26 H -0.011 1.011 27 H 0.259 0.741 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.042 0.958 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 0.340 16.574 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.253 5.253 14 C -0.096 4.096 15 C -0.150 4.150 16 C -0.113 4.113 17 H 0.106 0.894 18 C -0.146 4.146 19 C 0.004 3.996 20 O -0.408 6.408 21 C -0.072 4.072 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.016 0.984 26 H 0.007 0.993 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.061 0.939 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.065 0.234 15.890 17.821 hybrid contribution -0.109 -0.174 -0.368 0.421 sum -8.174 0.060 15.522 17.543 Atomic orbital electron populations 1.22423 0.96972 1.01745 1.02113 1.21718 0.92236 0.97261 0.90890 0.91924 1.19100 0.95232 0.94450 0.91591 1.21445 0.93223 1.28392 1.10961 0.92704 1.25848 1.02994 0.95520 0.95687 1.70079 1.37158 1.33661 1.17318 0.85631 0.80509 0.78314 0.77323 1.19933 1.21139 1.19314 1.63560 1.58174 1.01654 1.01889 1.23203 0.99454 0.97265 0.89631 1.22759 1.01519 0.93711 0.96984 1.22272 0.99999 0.94749 0.94324 0.89406 1.21428 1.00289 0.96058 0.96814 1.22176 0.98226 0.84649 0.94502 1.86445 1.69636 1.36605 1.48127 1.22655 0.97066 0.90703 0.96769 0.90839 0.92693 0.92902 0.98376 0.99255 0.93242 0.90934 0.92299 0.88182 0.91262 0.92409 0.92714 0.91874 0.92393 0.75287 0.93906 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 8.59 71.98 0.62 -5.17 16 2 C 0.09 3.65 2.33 44.92 0.10 3.76 16 3 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.03 1.79 4.28 29.85 0.13 1.92 16 5 C -0.50 -29.41 8.82 25.60 0.23 -29.19 16 6 H 0.05 3.19 7.75 -2.91 -0.02 3.17 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -59.01 13.28 21.45 0.28 -58.72 16 9 Si 0.96 46.67 29.54 68.60 2.03 48.69 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 N -0.53 -20.51 4.90 -860.37 -4.21 -24.73 16 14 C 0.03 0.90 6.49 86.77 0.56 1.46 16 15 C -0.11 -2.57 5.92 31.98 0.19 -2.38 16 16 C -0.09 -2.44 2.92 -9.61 -0.03 -2.47 16 17 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 18 C -0.11 -2.72 4.94 30.59 0.15 -2.57 16 19 C 0.08 1.53 6.94 71.98 0.50 2.03 16 20 O -0.60 -12.20 13.66 -148.98 -2.03 -14.23 16 21 C 0.06 2.08 5.04 86.64 0.44 2.52 16 22 H 0.07 1.99 6.29 -2.39 -0.02 1.98 16 23 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.05 1.75 6.15 -2.39 -0.01 1.73 16 25 H 0.00 -0.12 6.41 -2.39 -0.02 -0.14 16 26 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.51 5.70 -2.39 -0.01 1.49 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.68 7.94 -2.39 -0.02 1.66 16 32 H 0.06 1.62 8.00 -2.39 -0.02 1.60 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 0.96 7.68 -2.38 -0.02 0.94 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.40 3.86 9.12 -74.06 -0.68 3.19 16 37 H 0.04 1.82 7.82 -2.39 -0.02 1.81 16 38 H 0.04 1.72 4.82 -2.38 -0.01 1.71 16 Total: -1.00 -70.16 295.53 -0.23 -70.40 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.35 Total: 8.51 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 3.35 Total: -29.91 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.93 Total: -83.45 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -2.03 Total: -14.23 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -70.16 -0.23 -70.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593014741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.591 kcal (2) G-P(sol) polarization free energy of solvation -70.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds