Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47622 * 2 1 4 4 C 1.52998 * 109.47008 * 120.00327 * 2 1 3 5 5 C 1.50702 * 109.47048 * 185.00122 * 4 2 1 6 6 H 1.08000 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00263 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00281 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47055 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47401 * 119.99680 * 9 7 5 12 12 H 1.48498 * 109.47428 * 239.99757 * 9 7 5 13 13 N 1.46908 * 109.46995 * 239.99747 * 2 1 3 14 14 C 1.48063 * 111.16278 * 305.77884 * 13 2 1 15 15 C 1.53988 * 107.14301 * 145.63493 * 14 13 2 16 16 C 1.54600 * 105.14018 * 358.91186 * 15 14 13 17 17 H 1.09001 * 110.71831 * 96.40264 * 16 15 14 18 18 C 1.52999 * 110.88001 * 219.61871 * 16 15 14 19 19 C 1.53002 * 109.46717 * 288.58839 * 18 16 15 20 20 O 1.42906 * 109.47110 * 179.97438 * 19 18 16 21 21 C 1.48527 * 110.99687 * 63.17250 * 13 2 1 22 22 H 1.08998 * 109.47276 * 187.55505 * 1 2 3 23 23 H 1.08997 * 109.47186 * 307.55303 * 1 2 3 24 24 H 1.08992 * 109.47190 * 67.55840 * 1 2 3 25 25 H 1.09001 * 109.47288 * 304.99069 * 4 2 1 26 26 H 1.09000 * 109.47865 * 64.99701 * 4 2 1 27 27 H 0.97001 * 119.99642 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.75975 * 26.31304 * 14 13 2 29 29 H 1.09003 * 109.99376 * 265.08149 * 14 13 2 30 30 H 1.09002 * 110.30833 * 240.00056 * 15 14 13 31 31 H 1.08995 * 110.39895 * 117.87392 * 15 14 13 32 32 H 1.08994 * 109.47156 * 48.58696 * 18 16 15 33 33 H 1.08997 * 109.47299 * 168.59299 * 18 16 15 34 34 H 1.09002 * 109.47329 * 300.00152 * 19 18 16 35 35 H 1.09006 * 109.47291 * 60.00608 * 19 18 16 36 36 H 0.96697 * 113.99868 * 179.97438 * 20 19 18 37 37 H 1.09006 * 110.67263 * 81.84466 * 21 13 2 38 38 H 1.09000 * 110.67296 * 318.88080 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3582 8 7 3.5762 -1.8362 3.3005 9 14 6.0921 -1.0615 2.4366 10 1 6.5838 -0.2930 1.2650 11 1 6.4871 -0.3649 3.6872 12 1 6.6854 -2.4226 2.4196 13 7 2.0196 -0.6926 -1.1995 14 6 1.4367 -2.0492 -1.3088 15 6 1.2419 -2.3401 -2.8084 16 6 1.7214 -1.0615 -3.5333 17 1 2.7548 -1.1695 -3.8626 18 6 0.8096 -0.7312 -4.7167 19 6 1.0366 -1.7502 -5.8352 20 8 0.1846 -1.4421 -6.9404 21 6 1.6070 0.0238 -2.4334 22 1 -0.3634 -1.0187 0.1351 23 1 -0.3633 0.6263 0.8147 24 1 -0.3633 0.3923 -0.9498 25 1 1.6055 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2056 27 1 4.0606 -2.2424 4.0362 28 1 0.4750 -2.0794 -0.7966 29 1 2.1153 -2.7827 -0.8733 30 1 0.1897 -2.5253 -3.0243 31 1 1.8458 -3.1955 -3.1110 32 1 -0.2311 -0.7701 -4.3954 33 1 1.0393 0.2689 -5.0843 34 1 2.0775 -1.7113 -6.1565 35 1 0.8069 -2.7504 -5.4677 36 1 0.2756 -2.0485 -7.6881 37 1 2.2824 0.8540 -2.6405 38 1 0.5797 0.3777 -2.3476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593014743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = -83.294180 kcal Electronic energy + Delta-G solvation = -16339.954697 eV Core-core repulsion = 13794.773583 eV Total energy + Delta-G solvation = -2545.181113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52369 -37.97535 -36.17127 -34.48773 -32.17488 -30.21022 -29.09388 -28.09517 -25.21679 -23.55331 -23.12668 -21.11181 -19.92762 -18.37219 -18.21827 -17.11142 -16.73613 -16.45277 -15.89539 -15.17201 -14.95215 -14.72672 -14.34052 -13.92712 -13.60725 -13.50411 -13.26267 -12.78850 -12.75201 -12.57386 -12.46827 -12.30966 -12.15415 -11.88722 -11.65845 -11.56613 -11.28855 -11.10195 -10.98336 -10.80369 -10.49903 -8.97020 -8.11115 -6.16473 1.40782 1.41465 1.55184 2.46929 3.11853 3.24246 3.43724 3.79414 3.81757 4.09165 4.16776 4.27670 4.35415 4.43628 4.48740 4.54379 4.63205 4.65814 4.73735 4.89863 4.91438 4.96082 5.03349 5.09651 5.18918 5.24092 5.28547 5.36578 5.45778 5.48433 5.70371 5.88513 6.28148 6.32353 6.51835 6.93354 6.97581 7.49709 9.01221 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037807 B = 0.005849 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.416650 B = 4785.799036 C = 5138.734665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.063 0.937 4 C 0.038 3.962 5 C -0.501 4.501 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.515 5.515 14 C 0.034 3.966 15 C -0.116 4.116 16 C -0.077 4.077 17 H 0.082 0.918 18 C -0.103 4.103 19 C 0.077 3.923 20 O -0.597 6.597 21 C 0.032 3.968 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.070 0.930 25 H -0.009 1.009 26 H -0.007 1.007 27 H 0.259 0.741 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.074 0.926 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 0.002 -17.617 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.024 4.024 3 H 0.081 0.919 4 C 0.000 4.000 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.238 5.238 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.097 4.097 17 H 0.100 0.900 18 C -0.141 4.141 19 C -0.001 4.001 20 O -0.405 6.405 21 C -0.095 4.095 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.552 0.378 -17.011 17.898 hybrid contribution 0.291 -0.550 0.449 0.768 sum -5.260 -0.173 -16.562 17.378 Atomic orbital electron populations 1.22415 0.97216 1.01674 1.02184 1.21718 0.92175 0.97382 0.91159 0.91902 1.19008 0.95315 0.94157 0.91491 1.21525 0.93268 1.32486 1.06703 0.92525 1.25876 1.03070 0.95546 0.95647 1.70107 1.37087 1.38063 1.13028 0.85488 0.80407 0.77710 0.77955 1.18978 1.20661 1.20813 1.64826 1.55452 1.02106 1.01439 1.22836 0.97683 0.91684 0.97220 1.22474 1.01854 0.98276 0.92815 1.21901 0.99934 0.94208 0.93607 0.89989 1.21417 0.99547 0.99592 0.93516 1.22197 0.93421 0.97897 0.86575 1.86413 1.65714 1.59174 1.29226 1.23375 0.99450 0.97162 0.89555 0.92934 0.92253 0.91092 0.99096 0.98826 0.93238 0.93722 0.93543 0.90297 0.90455 0.91668 0.91247 0.92734 0.92700 0.75350 0.90718 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 8.49 71.98 0.61 -5.43 16 2 C 0.08 3.55 2.33 44.91 0.10 3.65 16 3 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 4 C 0.04 2.01 4.40 29.85 0.13 2.14 16 5 C -0.50 -29.21 8.84 25.60 0.23 -28.98 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 9 Si 0.96 46.13 29.54 68.60 2.03 48.15 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.51 -19.84 5.00 -857.42 -4.28 -24.12 16 14 C 0.03 1.20 5.31 86.41 0.46 1.66 16 15 C -0.12 -2.97 5.91 31.47 0.19 -2.78 16 16 C -0.08 -1.87 3.03 -9.59 -0.03 -1.90 16 17 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 18 C -0.10 -2.07 5.00 30.59 0.15 -1.92 16 19 C 0.08 1.31 6.94 71.98 0.50 1.81 16 20 O -0.60 -10.58 13.66 -148.98 -2.04 -12.61 16 21 C 0.03 0.95 5.85 86.65 0.51 1.45 16 22 H 0.05 1.82 6.16 -2.39 -0.01 1.81 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 2.06 5.90 -2.39 -0.01 2.04 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.38 7.21 -2.39 -0.02 -0.40 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.04 1.59 5.29 -2.39 -0.01 1.58 16 29 H 0.05 1.92 8.11 -2.39 -0.02 1.90 16 30 H 0.08 1.75 7.73 -2.39 -0.02 1.74 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.37 7.96 -2.39 -0.02 1.35 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.85 7.69 -2.38 -0.02 0.83 16 36 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.05 1.47 5.67 -2.39 -0.01 1.45 16 Total: -1.00 -68.59 296.38 -0.35 -68.94 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.35 Total: 8.12 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 3.31 Total: -30.17 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -4.00 Total: -82.42 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -2.04 Total: -12.61 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -68.59 -0.35 -68.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593014743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.355 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds