Wall clock time and date at job start Mon Mar 30 2020 03:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53386 * 2 1 4 4 C 1.53166 * 109.58613 * 239.86440 * 2 1 3 5 5 N 1.46845 * 109.55463 * 180.90842 * 4 2 1 6 6 C 1.46900 * 111.00045 * 185.84196 * 5 4 2 7 7 C 1.53000 * 109.47272 * 45.79142 * 6 5 4 8 8 C 1.50698 * 109.47229 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00040 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00303 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99840 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00614 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46897 * 59.99894 * 12 10 8 14 14 H 1.48498 * 109.47468 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46982 * 300.00354 * 12 10 8 16 16 C 1.46848 * 111.19518 * 61.74755 * 5 4 2 17 17 C 1.53037 * 109.52381 * 298.25146 * 16 5 4 18 18 H 1.08993 * 109.53667 * 179.13827 * 17 16 5 19 19 C 1.52996 * 109.50575 * 299.24608 * 17 16 5 20 20 C 1.53120 * 109.50184 * 120.09683 * 2 1 3 21 21 O 1.42901 * 109.52328 * 297.56462 * 20 2 1 22 22 H 1.09008 * 109.46892 * 299.90374 * 1 2 3 23 23 H 1.09003 * 109.47443 * 59.90382 * 1 2 3 24 24 H 1.09001 * 109.47737 * 179.90580 * 1 2 3 25 25 H 1.09003 * 109.44926 * 60.88570 * 4 2 1 26 26 H 1.09002 * 109.45193 * 300.93533 * 4 2 1 27 27 H 1.09002 * 109.47245 * 165.79508 * 6 5 4 28 28 H 1.09007 * 109.47066 * 285.78934 * 6 5 4 29 29 H 1.09001 * 109.46696 * 299.99866 * 7 6 5 30 30 H 1.08995 * 109.46848 * 60.00026 * 7 6 5 31 31 H 0.96998 * 120.00312 * 180.02562 * 11 10 8 32 32 H 1.09006 * 109.46097 * 178.23945 * 16 5 4 33 33 H 1.08996 * 109.46046 * 58.26729 * 16 5 4 34 34 H 1.08997 * 109.47561 * 179.80146 * 19 17 16 35 35 H 1.09001 * 109.46834 * 299.79776 * 19 17 16 36 36 H 1.09001 * 109.47304 * 59.79643 * 19 17 16 37 37 H 1.09002 * 109.52427 * 57.68960 * 20 2 1 38 38 H 0.96695 * 114.00471 * 60.12319 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0434 -0.7245 -1.2480 5 7 3.5117 -0.7431 -1.2363 6 6 4.0410 -1.3073 -2.4851 7 6 3.3019 -0.6933 -3.6758 8 6 3.8445 -1.2727 -4.9568 9 1 4.6375 -2.0052 -4.9249 10 6 3.3294 -0.8668 -6.1695 11 7 2.3641 0.0256 -6.2084 12 14 4.0023 -1.5843 -7.7575 13 1 3.8048 -3.0561 -7.7584 14 1 3.2857 -0.9875 -8.9132 15 1 5.4518 -1.2793 -7.8633 16 6 4.0242 -1.4735 -0.0700 17 6 3.5712 -0.7719 1.2124 18 1 3.9386 -1.3225 2.0783 19 6 4.1278 0.6530 1.2391 20 6 2.0412 -0.7238 1.2488 21 8 1.6131 -0.0209 2.4170 22 1 -0.3633 0.5124 0.8909 23 1 -0.3634 0.5153 -0.8891 24 1 -0.3634 -1.0276 -0.0017 25 1 1.6940 -0.2037 -2.1395 26 1 1.6673 -1.7475 -1.2543 27 1 5.1049 -1.0831 -2.5629 28 1 3.8965 -2.3878 -2.4856 29 1 2.2381 -0.9176 -3.5979 30 1 3.4465 0.3870 -3.6752 31 1 2.0013 0.3109 -7.0615 32 1 5.1134 -1.4968 -0.1059 33 1 3.6387 -2.4929 -0.0819 34 1 3.8019 1.1534 2.1509 35 1 5.2169 0.6181 1.2131 36 1 3.7611 1.2026 0.3721 37 1 1.6452 -1.7391 1.2691 38 1 0.6526 0.0497 2.5037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595734385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:49 Heat of formation + Delta-G solvation = -66.773795 kcal Electronic energy + Delta-G solvation = -16676.676149 eV Core-core repulsion = 14132.211414 eV Total energy + Delta-G solvation = -2544.464736 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.67652 -36.45726 -33.77330 -32.96761 -32.32181 -29.13810 -26.57758 -26.24004 -24.79846 -22.77594 -21.32077 -19.88216 -18.60726 -17.32342 -16.50721 -15.32948 -14.95183 -14.59410 -14.39101 -14.14535 -13.67074 -13.40211 -12.91935 -12.39656 -12.20262 -12.07710 -11.99637 -11.58882 -11.47962 -11.13189 -10.95137 -10.93261 -10.58555 -10.47551 -10.40551 -10.08324 -9.93883 -9.59496 -9.27128 -9.06602 -8.34909 -7.66948 -6.01462 -4.03793 3.32619 3.37035 3.39445 4.26299 4.37840 4.52639 4.83736 4.90243 5.16414 5.25420 5.34668 5.41686 5.55662 5.65847 5.77261 5.82309 5.85262 5.89245 6.03246 6.10855 6.20266 6.28833 6.32042 6.40070 6.41523 6.52617 6.61077 6.76930 6.92428 7.51002 7.61145 7.67763 7.78553 7.84711 8.03898 8.41806 9.02587 9.59969 11.09888 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044259 B = 0.006040 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.493423 B = 4634.360907 C = 5021.046916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 H 0.088 0.912 4 C 0.058 3.942 5 N -0.537 5.537 6 C 0.063 3.937 7 C 0.021 3.979 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.060 3.940 17 C -0.079 4.079 18 H 0.070 0.930 19 C -0.133 4.133 20 C 0.114 3.886 21 O -0.566 6.566 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -1.108 14.269 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.070 4.070 5 N -0.261 5.261 6 C -0.064 4.064 7 C -0.016 4.016 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.069 4.069 17 C -0.097 4.097 18 H 0.089 0.911 19 C -0.190 4.190 20 C 0.055 3.945 21 O -0.372 6.372 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.352 -0.489 14.264 14.336 hybrid contribution -0.571 -1.361 -1.164 1.880 sum -1.923 -1.850 13.100 13.369 Atomic orbital electron populations 1.21821 0.95302 1.01663 1.02051 1.21948 0.95174 1.01846 0.95200 0.89339 1.22219 0.88149 0.98498 0.98121 1.62012 1.07487 1.53901 1.02683 1.22315 0.99636 0.95856 0.88592 1.19236 0.95262 0.96807 0.90268 1.21151 1.19759 1.24060 0.91142 0.92817 1.24985 0.95051 0.95078 0.99149 1.69952 1.26432 1.31140 1.25813 0.86648 0.79152 0.79278 0.82855 1.20314 1.21267 1.20201 1.22076 1.00136 0.94392 0.90284 1.21121 0.93002 0.98444 0.97174 0.91142 1.21642 0.99702 0.95476 1.02153 1.21908 0.94957 0.93515 0.84142 1.86485 1.27021 1.79186 1.44493 0.92834 0.91690 0.92886 0.88515 0.95643 0.91860 0.96285 0.96208 0.95669 0.92926 0.90595 0.95548 0.93019 0.93467 0.91057 0.93547 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 2 C -0.12 -1.73 2.26 -90.47 -0.20 -1.94 16 3 H 0.09 1.36 6.59 -51.93 -0.34 1.02 16 4 C 0.06 1.01 4.14 -3.77 -0.02 0.99 16 5 N -0.54 -9.75 4.09 -234.58 -0.96 -10.71 16 6 C 0.06 1.33 5.21 -3.82 -0.02 1.31 16 7 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 8 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 9 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 12 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 C 0.06 0.91 4.86 -3.83 -0.02 0.89 16 17 C -0.08 -1.08 2.97 -90.54 -0.27 -1.35 16 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.13 -1.86 8.58 37.16 0.32 -1.54 16 20 C 0.11 1.50 2.69 -26.61 -0.07 1.43 16 21 O -0.57 -6.98 12.54 -35.23 -0.44 -7.42 16 22 H 0.05 0.50 6.84 -51.92 -0.36 0.15 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 1.93 5.81 -51.93 -0.30 1.63 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.12 6.01 -51.93 -0.31 0.80 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.37 3.24 7.47 45.56 0.34 3.58 16 LS Contribution 291.32 15.07 4.39 4.39 Total: -1.00 -29.94 291.32 -7.65 -37.59 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.88 Total: 0.22 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.48 Total: -14.69 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.22 Total: -36.69 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.44 Total: -7.42 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.94 -7.65 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595734385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.186 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds