Wall clock time and date at job start Mon Mar 30 2020 03:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.21163 * 2 1
4 4 C 1.54720 * 109.21312 * 240.63299 * 2 1 3
5 5 C 1.50981 * 109.07865 * 166.35747 * 4 2 1
6 6 N 1.48024 * 113.13027 * 92.04294 * 5 4 2
7 7 C 1.46896 * 111.00176 * 84.00118 * 6 5 4
8 8 C 1.52996 * 109.47256 * 66.04164 * 7 6 5
9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6
10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7
11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7
12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8
13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8
14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9
15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9
16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9
17 17 C 1.47400 * 113.47585 * 318.18002 * 6 5 4
18 18 C 1.51043 * 111.55704 * 319.08938 * 17 6 5
19 19 H 1.08991 * 109.89437 * 334.46559 * 18 17 6
20 20 C 1.53010 * 109.83423 * 213.53128 * 18 17 6
21 21 O 1.36609 * 109.17896 * 119.35569 * 2 1 3
22 22 H 1.08995 * 109.46880 * 179.36382 * 1 2 3
23 23 H 1.08998 * 109.47036 * 299.36883 * 1 2 3
24 24 H 1.09002 * 109.46854 * 59.36254 * 1 2 3
25 25 H 1.08999 * 109.53063 * 46.47946 * 4 2 1
26 26 H 1.08996 * 109.59981 * 286.28413 * 4 2 1
27 27 H 1.08998 * 108.75009 * 331.10232 * 5 4 2
28 28 H 1.08999 * 108.65958 * 212.91871 * 5 4 2
29 29 H 1.09004 * 109.46774 * 306.04363 * 7 6 5
30 30 H 1.09000 * 109.47723 * 186.04751 * 7 6 5
31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6
32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6
33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9
34 34 H 1.09001 * 109.06092 * 79.62099 * 17 6 5
35 35 H 1.08997 * 109.06497 * 198.55067 * 17 6 5
36 36 H 1.08997 * 109.47168 * 301.88438 * 20 18 17
37 37 H 1.09002 * 109.46792 * 61.88710 * 20 18 17
38 38 H 1.08994 * 109.46659 * 181.88136 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8887 1.0293 0.0000
4 6 2.0392 -0.7165 -1.2733
5 6 3.5109 -0.4279 -1.4468
6 7 4.3813 -1.4441 -0.8136
7 6 4.5792 -2.5960 -1.7035
8 6 5.3701 -2.1573 -2.9375
9 6 5.5725 -3.3389 -3.8507
10 1 5.1763 -4.3060 -3.5784
11 6 6.2582 -3.1839 -5.0369
12 7 6.4301 -4.2139 -5.8364
13 14 6.9429 -1.5111 -5.5081
14 1 8.3240 -1.3748 -4.9797
15 1 6.9642 -1.3839 -6.9876
16 1 6.0849 -0.4447 -4.9320
17 6 3.9088 -1.8771 0.5138
18 6 3.3965 -0.7123 1.3276
19 1 3.8707 0.2105 0.9936
20 6 3.6966 -0.9430 2.8102
21 8 1.9788 -0.6325 1.1246
22 1 -0.3633 -1.0276 -0.0114
23 1 -0.3633 0.5040 0.8956
24 1 -0.3633 0.5237 -0.8842
25 1 1.4911 -0.3502 -2.1413
26 1 1.8876 -1.7912 -1.1734
27 1 3.7314 0.5449 -1.0075
28 1 3.7355 -0.3894 -2.5127
29 1 3.6098 -2.9866 -2.0131
30 1 5.1318 -3.3728 -1.1750
31 1 6.3395 -1.7667 -2.6278
32 1 4.8175 -1.3806 -3.4660
33 1 6.9128 -4.1049 -6.6706
34 1 3.1056 -2.6029 0.3864
35 1 4.7327 -2.3499 1.0483
36 1 3.2335 -1.8751 3.1339
37 1 4.7750 -1.0026 2.9576
38 1 3.2952 -0.1155 3.3951
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595780510.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:35
Heat of formation + Delta-G solvation = -51.057026 kcal
Electronic energy + Delta-G solvation = -16638.573161 eV
Core-core repulsion = 14094.789955 eV
Total energy + Delta-G solvation = -2543.783205 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.13803 -36.54348 -34.17291 -33.05042 -31.16306 -29.73132 -28.77745 -25.94128
-24.24631 -22.86320 -21.45762 -20.52951 -19.21240 -16.94986 -16.78765 -16.09003
-15.49507 -15.06156 -14.30068 -13.84687 -13.52416 -13.27731 -12.84594 -12.74867
-12.55538 -12.45799 -12.09907 -12.05739 -11.76865 -11.54939 -11.21325 -11.13657
-10.97094 -10.65003 -10.16472 -10.12322 -9.78400 -9.68066 -9.33626 -9.15281
-8.52307 -7.76788 -6.04093 -4.02065 3.32573 3.39349 3.43964 3.59766
4.29481 4.46290 4.75235 4.90926 4.99888 5.12003 5.15686 5.29624
5.30942 5.49656 5.50720 5.56658 5.63771 5.70398 5.81536 5.93322
5.97996 6.06998 6.10579 6.11499 6.14870 6.22931 6.37004 6.47748
6.78131 7.13885 7.31600 7.54863 7.61606 7.74867 7.85328 8.53708
9.00155 9.58437 11.09350
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037303 B = 0.006354 C = 0.005984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 750.432953 B = 4405.808424 C = 4678.259223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.103 3.897
3 H 0.042 0.958
4 C -0.186 4.186
5 C 0.045 3.955
6 N -0.547 5.547
7 C 0.072 3.928
8 C -0.007 4.007
9 C -0.521 4.521
10 H 0.070 0.930
11 C 0.067 3.933
12 N -0.904 5.904
13 Si 0.882 3.118
14 H -0.276 1.276
15 H -0.289 1.289
16 H -0.266 1.266
17 C 0.031 3.969
18 C 0.092 3.908
19 H 0.070 0.930
20 C -0.140 4.140
21 O -0.384 6.384
22 H 0.061 0.939
23 H 0.059 0.941
24 H 0.068 0.932
25 H 0.075 0.925
26 H 0.072 0.928
27 H 0.062 0.938
28 H 0.084 0.916
29 H 0.026 0.974
30 H 0.065 0.935
31 H 0.020 0.980
32 H 0.016 0.984
33 H 0.263 0.737
34 H 0.043 0.957
35 H 0.079 0.921
36 H 0.063 0.937
37 H 0.074 0.926
38 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.705 9.623 13.824 18.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.044 3.956
3 H 0.060 0.940
4 C -0.226 4.226
5 C -0.083 4.083
6 N -0.271 5.271
7 C -0.054 4.054
8 C -0.044 4.044
9 C -0.560 4.560
10 H 0.088 0.912
11 C -0.134 4.134
12 N -0.543 5.543
13 Si 0.709 3.291
14 H -0.202 1.202
15 H -0.215 1.215
16 H -0.190 1.190
17 C -0.097 4.097
18 C 0.035 3.965
19 H 0.088 0.912
20 C -0.198 4.198
21 O -0.304 6.304
22 H 0.080 0.920
23 H 0.078 0.922
24 H 0.087 0.913
25 H 0.093 0.907
26 H 0.091 0.909
27 H 0.080 0.920
28 H 0.102 0.898
29 H 0.044 0.956
30 H 0.084 0.916
31 H 0.038 0.962
32 H 0.034 0.966
33 H 0.073 0.927
34 H 0.061 0.939
35 H 0.098 0.902
36 H 0.082 0.918
37 H 0.093 0.907
38 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -8.302 9.697 13.850 18.835
hybrid contribution -0.166 0.428 -0.853 0.969
sum -8.468 10.125 12.997 18.524
Atomic orbital electron populations
1.21806 0.93474 1.02713 1.02002 1.21287 0.94564 0.94357 0.85387
0.93991 1.22892 0.98461 1.02264 0.98949 1.22079 0.89499 0.95559
1.01188 1.62323 1.47343 1.14878 1.02586 1.22095 0.98744 0.90626
0.93972 1.19595 0.95402 0.97164 0.92268 1.21093 1.35547 0.95951
1.03368 0.91166 1.24997 0.95611 0.96601 0.96156 1.69916 1.42227
1.30210 1.11962 0.86748 0.79923 0.85150 0.77278 1.20218 1.21496
1.19023 1.22491 0.99421 0.97026 0.90731 1.21970 0.80326 0.98464
0.95741 0.91225 1.21752 1.01815 1.02638 0.93588 1.86350 1.23220
1.78285 1.42504 0.92000 0.92200 0.91274 0.90665 0.90943 0.91979
0.89795 0.95553 0.91620 0.96187 0.96602 0.92739 0.93912 0.90246
0.91822 0.90747 0.92062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 9.48 37.16 0.35 -1.15 16
2 C 0.10 1.30 2.91 -25.83 -0.08 1.23 16
3 H 0.04 0.51 7.72 -51.93 -0.40 0.11 16
4 C -0.19 -2.66 4.95 -26.84 -0.13 -2.79 16
5 C 0.04 0.72 4.99 -4.22 -0.02 0.70 16
6 N -0.55 -9.68 4.74 -235.72 -1.12 -10.80 16
7 C 0.07 1.51 4.79 -3.83 -0.02 1.49 16
8 C -0.01 -0.16 4.02 -27.88 -0.11 -0.27 16
9 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16
10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16
11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16
12 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16
13 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16
14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16
15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
16 H -0.27 -6.39 6.54 56.52 0.37 -6.03 16
17 C 0.03 0.47 4.63 -4.53 -0.02 0.45 16
18 C 0.09 1.19 2.90 -27.71 -0.08 1.11 16
19 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16
20 C -0.14 -1.44 9.36 37.16 0.35 -1.09 16
21 O -0.38 -5.29 9.20 -21.71 -0.20 -5.49 16
22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
25 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16
26 H 0.07 1.16 6.69 -51.93 -0.35 0.81 16
27 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16
28 H 0.08 1.51 5.80 -51.93 -0.30 1.21 16
29 H 0.03 0.56 7.58 -51.93 -0.39 0.17 16
30 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16
31 H 0.02 0.49 7.58 -51.93 -0.39 0.10 16
32 H 0.02 0.39 5.27 -51.93 -0.27 0.11 16
33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
34 H 0.04 0.68 7.12 -51.93 -0.37 0.31 16
35 H 0.08 1.13 7.74 -51.93 -0.40 0.72 16
36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16
38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 289.39 15.07 4.36 4.36
Total: -1.00 -30.82 289.39 -7.58 -38.39
By element:
Atomic # 1 Polarization: 3.88 SS G_CDS: -6.53 Total: -2.66 kcal
Atomic # 6 Polarization: -13.64 SS G_CDS: -0.19 Total: -13.83 kcal
Atomic # 7 Polarization: -37.83 SS G_CDS: -0.34 Total: -38.18 kcal
Atomic # 8 Polarization: -5.29 SS G_CDS: -0.20 Total: -5.49 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -30.82 -7.58 -38.39 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595780510.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.662 kcal
(2) G-P(sol) polarization free energy of solvation -30.817 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds