Wall clock time and date at job start Mon Mar 30 2020 03:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.21163 * 2 1
4 4 C 1.54720 * 109.21312 * 240.63299 * 2 1 3
5 5 C 1.50981 * 109.07865 * 166.35747 * 4 2 1
6 6 N 1.48024 * 113.13027 * 92.04294 * 5 4 2
7 7 C 1.46896 * 111.00176 * 84.00118 * 6 5 4
8 8 C 1.52996 * 109.47256 * 66.04164 * 7 6 5
9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6
10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7
11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7
12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8
13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8
14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9
15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9
16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9
17 17 C 1.47400 * 113.47585 * 318.18002 * 6 5 4
18 18 C 1.51043 * 111.55704 * 319.08938 * 17 6 5
19 19 H 1.08991 * 109.89437 * 334.46559 * 18 17 6
20 20 C 1.53010 * 109.83423 * 213.53128 * 18 17 6
21 21 O 1.36609 * 109.17896 * 119.35569 * 2 1 3
22 22 H 1.08995 * 109.46880 * 179.36382 * 1 2 3
23 23 H 1.08998 * 109.47036 * 299.36883 * 1 2 3
24 24 H 1.09002 * 109.46854 * 59.36254 * 1 2 3
25 25 H 1.08999 * 109.53063 * 46.47946 * 4 2 1
26 26 H 1.08996 * 109.59981 * 286.28413 * 4 2 1
27 27 H 1.08998 * 108.75009 * 331.10232 * 5 4 2
28 28 H 1.08999 * 108.65958 * 212.91871 * 5 4 2
29 29 H 1.09004 * 109.46774 * 306.04363 * 7 6 5
30 30 H 1.09000 * 109.47723 * 186.04751 * 7 6 5
31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6
32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6
33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9
34 34 H 1.09001 * 109.06092 * 79.62099 * 17 6 5
35 35 H 1.08997 * 109.06497 * 198.55067 * 17 6 5
36 36 H 1.08997 * 109.47168 * 301.88438 * 20 18 17
37 37 H 1.09002 * 109.46792 * 61.88710 * 20 18 17
38 38 H 1.08994 * 109.46659 * 181.88136 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8887 1.0293 0.0000
4 6 2.0392 -0.7165 -1.2733
5 6 3.5109 -0.4279 -1.4468
6 7 4.3813 -1.4441 -0.8136
7 6 4.5792 -2.5960 -1.7035
8 6 5.3701 -2.1573 -2.9375
9 6 5.5725 -3.3389 -3.8507
10 1 5.1763 -4.3060 -3.5784
11 6 6.2582 -3.1839 -5.0369
12 7 6.4301 -4.2139 -5.8364
13 14 6.9429 -1.5111 -5.5081
14 1 8.3240 -1.3748 -4.9797
15 1 6.9642 -1.3839 -6.9876
16 1 6.0849 -0.4447 -4.9320
17 6 3.9088 -1.8771 0.5138
18 6 3.3965 -0.7123 1.3276
19 1 3.8707 0.2105 0.9936
20 6 3.6966 -0.9430 2.8102
21 8 1.9788 -0.6325 1.1246
22 1 -0.3633 -1.0276 -0.0114
23 1 -0.3633 0.5040 0.8956
24 1 -0.3633 0.5237 -0.8842
25 1 1.4911 -0.3502 -2.1413
26 1 1.8876 -1.7912 -1.1734
27 1 3.7314 0.5449 -1.0075
28 1 3.7355 -0.3894 -2.5127
29 1 3.6098 -2.9866 -2.0131
30 1 5.1318 -3.3728 -1.1750
31 1 6.3395 -1.7667 -2.6278
32 1 4.8175 -1.3806 -3.4660
33 1 6.9128 -4.1049 -6.6706
34 1 3.1056 -2.6029 0.3864
35 1 4.7327 -2.3499 1.0483
36 1 3.2335 -1.8751 3.1339
37 1 4.7750 -1.0026 2.9576
38 1 3.2952 -0.1155 3.3951
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595780510.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:35
Heat of formation + Delta-G solvation = -71.690372 kcal
Electronic energy + Delta-G solvation = -16639.467890 eV
Core-core repulsion = 14094.789955 eV
Total energy + Delta-G solvation = -2544.677934 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.25865 -37.92997 -35.27183 -35.04280 -32.82747 -30.99598 -30.00357 -27.40304
-25.71746 -24.17375 -22.74963 -21.82882 -20.70373 -19.05991 -17.91162 -17.26288
-16.82983 -16.41200 -16.11877 -15.38213 -14.81866 -14.76741 -14.38786 -13.95413
-13.76780 -13.63485 -13.33041 -13.11369 -12.91390 -12.84816 -12.73874 -12.55551
-12.33649 -12.01470 -11.86763 -11.66737 -11.45529 -11.40604 -11.13952 -10.77287
-10.40536 -9.20217 -8.31909 -6.36462 1.35564 1.36593 1.49329 2.34845
2.62515 2.93777 3.03498 3.68903 3.82010 3.95721 4.06771 4.12931
4.26846 4.32879 4.42734 4.47119 4.54811 4.66487 4.72522 4.75387
4.81917 4.88346 4.96449 4.98765 5.06137 5.11049 5.19592 5.24585
5.29188 5.35255 5.45802 5.60118 6.07054 6.16141 6.27590 6.68049
6.71044 7.28261 8.84950
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037303 B = 0.006354 C = 0.005984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 750.432953 B = 4405.808424 C = 4678.259223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.101 3.899
3 H 0.055 0.945
4 C -0.182 4.182
5 C 0.043 3.957
6 N -0.551 5.551
7 C 0.086 3.914
8 C 0.002 3.998
9 C -0.535 4.535
10 H 0.030 0.970
11 C 0.007 3.993
12 N -0.950 5.950
13 Si 0.953 3.047
14 H -0.266 1.266
15 H -0.282 1.282
16 H -0.248 1.248
17 C 0.033 3.967
18 C 0.093 3.907
19 H 0.071 0.929
20 C -0.135 4.135
21 O -0.393 6.393
22 H 0.052 0.948
23 H 0.070 0.930
24 H 0.085 0.915
25 H 0.087 0.913
26 H 0.049 0.951
27 H 0.081 0.919
28 H 0.064 0.936
29 H 0.013 0.987
30 H 0.059 0.941
31 H 0.021 0.979
32 H 0.021 0.979
33 H 0.267 0.733
34 H 0.029 0.971
35 H 0.088 0.912
36 H 0.062 0.938
37 H 0.087 0.913
38 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.905 12.225 15.010 21.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.042 3.958
3 H 0.073 0.927
4 C -0.221 4.221
5 C -0.084 4.084
6 N -0.275 5.275
7 C -0.042 4.042
8 C -0.036 4.036
9 C -0.574 4.574
10 H 0.048 0.952
11 C -0.190 4.190
12 N -0.591 5.591
13 Si 0.776 3.224
14 H -0.191 1.191
15 H -0.208 1.208
16 H -0.171 1.171
17 C -0.095 4.095
18 C 0.037 3.963
19 H 0.089 0.911
20 C -0.193 4.193
21 O -0.312 6.312
22 H 0.071 0.929
23 H 0.089 0.911
24 H 0.104 0.896
25 H 0.105 0.895
26 H 0.068 0.932
27 H 0.100 0.900
28 H 0.082 0.918
29 H 0.031 0.969
30 H 0.077 0.923
31 H 0.039 0.961
32 H 0.039 0.961
33 H 0.076 0.924
34 H 0.047 0.953
35 H 0.106 0.894
36 H 0.081 0.919
37 H 0.105 0.895
38 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -8.518 12.303 15.062 21.232
hybrid contribution -0.139 -0.471 -1.207 1.303
sum -8.657 11.832 13.855 20.172
Atomic orbital electron populations
1.21808 0.91851 1.02604 1.03369 1.21413 0.95872 0.94435 0.84063
0.92734 1.22855 0.97449 1.01092 1.00729 1.22132 0.90464 0.95882
0.99965 1.62272 1.48643 1.13565 1.03067 1.21756 0.97402 0.91663
0.93360 1.19454 0.95947 0.95304 0.92852 1.21406 1.35340 0.95992
1.04614 0.95193 1.25981 0.95888 1.01118 0.95966 1.70064 1.43385
1.32928 1.12704 0.85616 0.79613 0.79892 0.77260 1.19104 1.20780
1.17142 1.22592 0.99327 0.97974 0.89594 1.22047 0.79989 0.97282
0.96999 0.91074 1.21750 1.02778 1.03151 0.91585 1.86372 1.23567
1.78524 1.42765 0.92860 0.91118 0.89648 0.89468 0.93236 0.90041
0.91780 0.96880 0.92254 0.96083 0.96093 0.92378 0.95290 0.89420
0.91855 0.89463 0.90777
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.59 9.48 71.98 0.68 -1.90 16
2 C 0.10 2.32 2.91 31.18 0.09 2.41 16
3 H 0.05 1.14 7.72 -2.39 -0.02 1.13 16
4 C -0.18 -4.96 4.95 30.52 0.15 -4.81 16
5 C 0.04 1.33 4.99 85.43 0.43 1.76 16
6 N -0.55 -19.00 4.74 -899.70 -4.27 -23.27 16
7 C 0.09 3.62 4.79 86.30 0.41 4.03 16
8 C 0.00 0.10 4.02 29.85 0.12 0.22 16
9 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16
10 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16
11 C 0.01 0.44 5.47 84.66 0.46 0.91 16
12 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16
13 Si 0.95 45.10 27.47 68.60 1.88 46.99 16
14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16
15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
16 H -0.25 -10.94 6.54 99.48 0.65 -10.28 16
17 C 0.03 0.94 4.63 85.57 0.40 1.34 16
18 C 0.09 2.21 2.90 29.96 0.09 2.30 16
19 H 0.07 1.68 6.78 -2.39 -0.02 1.66 16
20 C -0.14 -2.40 9.36 71.99 0.67 -1.72 16
21 O -0.39 -9.96 9.20 -100.61 -0.93 -10.89 16
22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
25 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16
26 H 0.05 1.58 6.69 -2.39 -0.02 1.56 16
27 H 0.08 2.21 6.55 -2.39 -0.02 2.19 16
28 H 0.06 2.23 5.80 -2.39 -0.01 2.21 16
29 H 0.01 0.57 7.58 -2.38 -0.02 0.56 16
30 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16
31 H 0.02 1.02 7.58 -2.38 -0.02 1.00 16
32 H 0.02 1.00 5.27 -2.39 -0.01 0.99 16
33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16
34 H 0.03 0.92 7.12 -2.39 -0.02 0.90 16
35 H 0.09 2.37 7.74 -2.39 -0.02 2.35 16
36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16
38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
Total: -1.00 -66.79 289.39 1.69 -65.10
By element:
Atomic # 1 Polarization: 8.26 SS G_CDS: 0.95 Total: 9.21 kcal
Atomic # 6 Polarization: -30.72 SS G_CDS: 3.75 Total: -26.97 kcal
Atomic # 7 Polarization: -79.47 SS G_CDS: -3.97 Total: -83.44 kcal
Atomic # 8 Polarization: -9.96 SS G_CDS: -0.93 Total: -10.89 kcal
Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal
Total: -66.79 1.69 -65.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595780510.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal
(2) G-P(sol) polarization free energy of solvation -66.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.690 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds