Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.21163 * 2 1 4 4 C 1.54720 * 109.21312 * 240.63299 * 2 1 3 5 5 C 1.50981 * 109.07865 * 166.35747 * 4 2 1 6 6 N 1.48024 * 113.13027 * 92.04294 * 5 4 2 7 7 C 1.46896 * 111.00176 * 84.00118 * 6 5 4 8 8 C 1.52996 * 109.47256 * 66.04164 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.47400 * 113.47585 * 318.18002 * 6 5 4 18 18 C 1.51043 * 111.55704 * 319.08938 * 17 6 5 19 19 H 1.08991 * 109.89437 * 334.46559 * 18 17 6 20 20 C 1.53010 * 109.83423 * 213.53128 * 18 17 6 21 21 O 1.36609 * 109.17896 * 119.35569 * 2 1 3 22 22 H 1.08995 * 109.46880 * 179.36382 * 1 2 3 23 23 H 1.08998 * 109.47036 * 299.36883 * 1 2 3 24 24 H 1.09002 * 109.46854 * 59.36254 * 1 2 3 25 25 H 1.08999 * 109.53063 * 46.47946 * 4 2 1 26 26 H 1.08996 * 109.59981 * 286.28413 * 4 2 1 27 27 H 1.08998 * 108.75009 * 331.10232 * 5 4 2 28 28 H 1.08999 * 108.65958 * 212.91871 * 5 4 2 29 29 H 1.09004 * 109.46774 * 306.04363 * 7 6 5 30 30 H 1.09000 * 109.47723 * 186.04751 * 7 6 5 31 31 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 32 32 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.06092 * 79.62099 * 17 6 5 35 35 H 1.08997 * 109.06497 * 198.55067 * 17 6 5 36 36 H 1.08997 * 109.47168 * 301.88438 * 20 18 17 37 37 H 1.09002 * 109.46792 * 61.88710 * 20 18 17 38 38 H 1.08994 * 109.46659 * 181.88136 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0392 -0.7165 -1.2733 5 6 3.5109 -0.4279 -1.4468 6 7 4.3813 -1.4441 -0.8136 7 6 4.5792 -2.5960 -1.7035 8 6 5.3701 -2.1573 -2.9375 9 6 5.5725 -3.3389 -3.8507 10 1 5.1763 -4.3060 -3.5784 11 6 6.2582 -3.1839 -5.0369 12 7 6.4301 -4.2139 -5.8364 13 14 6.9429 -1.5111 -5.5081 14 1 8.3240 -1.3748 -4.9797 15 1 6.9642 -1.3839 -6.9876 16 1 6.0849 -0.4447 -4.9320 17 6 3.9088 -1.8771 0.5138 18 6 3.3965 -0.7123 1.3276 19 1 3.8707 0.2105 0.9936 20 6 3.6966 -0.9430 2.8102 21 8 1.9788 -0.6325 1.1246 22 1 -0.3633 -1.0276 -0.0114 23 1 -0.3633 0.5040 0.8956 24 1 -0.3633 0.5237 -0.8842 25 1 1.4911 -0.3502 -2.1413 26 1 1.8876 -1.7912 -1.1734 27 1 3.7314 0.5449 -1.0075 28 1 3.7355 -0.3894 -2.5127 29 1 3.6098 -2.9866 -2.0131 30 1 5.1318 -3.3728 -1.1750 31 1 6.3395 -1.7667 -2.6278 32 1 4.8175 -1.3806 -3.4660 33 1 6.9128 -4.1049 -6.6706 34 1 3.1056 -2.6029 0.3864 35 1 4.7327 -2.3499 1.0483 36 1 3.2335 -1.8751 3.1339 37 1 4.7750 -1.0026 2.9576 38 1 3.2952 -0.1155 3.3951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -71.690372 kcal Electronic energy + Delta-G solvation = -16639.467890 eV Core-core repulsion = 14094.789955 eV Total energy + Delta-G solvation = -2544.677934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25865 -37.92997 -35.27183 -35.04280 -32.82747 -30.99598 -30.00357 -27.40304 -25.71746 -24.17375 -22.74963 -21.82882 -20.70373 -19.05991 -17.91162 -17.26288 -16.82983 -16.41200 -16.11877 -15.38213 -14.81866 -14.76741 -14.38786 -13.95413 -13.76780 -13.63485 -13.33041 -13.11369 -12.91390 -12.84816 -12.73874 -12.55551 -12.33649 -12.01470 -11.86763 -11.66737 -11.45529 -11.40604 -11.13952 -10.77287 -10.40536 -9.20217 -8.31909 -6.36462 1.35564 1.36593 1.49329 2.34845 2.62515 2.93777 3.03498 3.68903 3.82010 3.95721 4.06771 4.12931 4.26846 4.32879 4.42734 4.47119 4.54811 4.66487 4.72522 4.75387 4.81917 4.88346 4.96449 4.98765 5.06137 5.11049 5.19592 5.24585 5.29188 5.35255 5.45802 5.60118 6.07054 6.16141 6.27590 6.68049 6.71044 7.28261 8.84950 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.006354 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.432953 B = 4405.808424 C = 4678.259223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.182 4.182 5 C 0.043 3.957 6 N -0.551 5.551 7 C 0.086 3.914 8 C 0.002 3.998 9 C -0.535 4.535 10 H 0.030 0.970 11 C 0.007 3.993 12 N -0.950 5.950 13 Si 0.953 3.047 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.248 1.248 17 C 0.033 3.967 18 C 0.093 3.907 19 H 0.071 0.929 20 C -0.135 4.135 21 O -0.393 6.393 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.029 0.971 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 12.225 15.010 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 H 0.073 0.927 4 C -0.221 4.221 5 C -0.084 4.084 6 N -0.275 5.275 7 C -0.042 4.042 8 C -0.036 4.036 9 C -0.574 4.574 10 H 0.048 0.952 11 C -0.190 4.190 12 N -0.591 5.591 13 Si 0.776 3.224 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.171 1.171 17 C -0.095 4.095 18 C 0.037 3.963 19 H 0.089 0.911 20 C -0.193 4.193 21 O -0.312 6.312 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.518 12.303 15.062 21.232 hybrid contribution -0.139 -0.471 -1.207 1.303 sum -8.657 11.832 13.855 20.172 Atomic orbital electron populations 1.21808 0.91851 1.02604 1.03369 1.21413 0.95872 0.94435 0.84063 0.92734 1.22855 0.97449 1.01092 1.00729 1.22132 0.90464 0.95882 0.99965 1.62272 1.48643 1.13565 1.03067 1.21756 0.97402 0.91663 0.93360 1.19454 0.95947 0.95304 0.92852 1.21406 1.35340 0.95992 1.04614 0.95193 1.25981 0.95888 1.01118 0.95966 1.70064 1.43385 1.32928 1.12704 0.85616 0.79613 0.79892 0.77260 1.19104 1.20780 1.17142 1.22592 0.99327 0.97974 0.89594 1.22047 0.79989 0.97282 0.96999 0.91074 1.21750 1.02778 1.03151 0.91585 1.86372 1.23567 1.78524 1.42765 0.92860 0.91118 0.89648 0.89468 0.93236 0.90041 0.91780 0.96880 0.92254 0.96083 0.96093 0.92378 0.95290 0.89420 0.91855 0.89463 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.48 71.98 0.68 -1.90 16 2 C 0.10 2.32 2.91 31.18 0.09 2.41 16 3 H 0.05 1.14 7.72 -2.39 -0.02 1.13 16 4 C -0.18 -4.96 4.95 30.52 0.15 -4.81 16 5 C 0.04 1.33 4.99 85.43 0.43 1.76 16 6 N -0.55 -19.00 4.74 -899.70 -4.27 -23.27 16 7 C 0.09 3.62 4.79 86.30 0.41 4.03 16 8 C 0.00 0.10 4.02 29.85 0.12 0.22 16 9 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16 10 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 11 C 0.01 0.44 5.47 84.66 0.46 0.91 16 12 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 13 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.25 -10.94 6.54 99.48 0.65 -10.28 16 17 C 0.03 0.94 4.63 85.57 0.40 1.34 16 18 C 0.09 2.21 2.90 29.96 0.09 2.30 16 19 H 0.07 1.68 6.78 -2.39 -0.02 1.66 16 20 C -0.14 -2.40 9.36 71.99 0.67 -1.72 16 21 O -0.39 -9.96 9.20 -100.61 -0.93 -10.89 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 26 H 0.05 1.58 6.69 -2.39 -0.02 1.56 16 27 H 0.08 2.21 6.55 -2.39 -0.02 2.19 16 28 H 0.06 2.23 5.80 -2.39 -0.01 2.21 16 29 H 0.01 0.57 7.58 -2.38 -0.02 0.56 16 30 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 31 H 0.02 1.02 7.58 -2.38 -0.02 1.00 16 32 H 0.02 1.00 5.27 -2.39 -0.01 0.99 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.03 0.92 7.12 -2.39 -0.02 0.90 16 35 H 0.09 2.37 7.74 -2.39 -0.02 2.35 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.79 289.39 1.69 -65.10 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.95 Total: 9.21 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.75 Total: -26.97 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.97 Total: -83.44 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.93 Total: -10.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -66.79 1.69 -65.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds