Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45106 * 2 1 4 4 C 1.53041 * 109.46306 * 240.02666 * 2 1 3 5 5 C 1.53128 * 109.27558 * 180.80298 * 4 2 1 6 6 H 1.09001 * 109.52324 * 297.74956 * 5 4 2 7 7 O 1.42897 * 109.57331 * 177.59108 * 5 4 2 8 8 C 1.53115 * 109.16100 * 57.65491 * 5 4 2 9 9 C 1.53035 * 109.31165 * 302.32563 * 8 5 4 10 10 N 1.46846 * 109.46494 * 119.97418 * 2 1 3 11 11 C 1.46906 * 110.99751 * 305.85712 * 10 2 1 12 12 C 1.53001 * 109.46936 * 165.48234 * 11 10 2 13 13 C 1.53000 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47346 * 179.97438 * 13 12 11 15 15 H 1.07990 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99780 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99493 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47407 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46976 * 120.00390 * 18 16 14 21 21 H 1.48502 * 109.47134 * 239.99698 * 18 16 14 22 22 H 1.09002 * 109.46978 * 187.28867 * 1 2 3 23 23 H 1.08993 * 109.47041 * 307.28847 * 1 2 3 24 24 H 1.08995 * 109.47202 * 67.29092 * 1 2 3 25 25 H 1.08995 * 109.50306 * 60.86804 * 4 2 1 26 26 H 1.09000 * 109.50215 * 300.74099 * 4 2 1 27 27 H 0.96695 * 114.00370 * 180.28729 * 7 5 4 28 28 H 1.08998 * 109.50407 * 62.28264 * 8 5 4 29 29 H 1.08994 * 109.50447 * 182.36377 * 8 5 4 30 30 H 1.09002 * 109.46235 * 179.21667 * 9 8 5 31 31 H 1.08998 * 109.46089 * 299.18003 * 9 8 5 32 32 H 1.09001 * 109.47105 * 285.47954 * 11 10 2 33 33 H 1.08996 * 109.47314 * 45.48152 * 11 10 2 34 34 H 1.09001 * 109.46995 * 299.99787 * 12 11 10 35 35 H 1.08996 * 109.47186 * 59.99840 * 12 11 10 36 36 H 1.09001 * 109.46900 * 299.99706 * 13 12 11 37 37 H 1.09006 * 109.47408 * 59.99620 * 13 12 11 38 38 H 0.97005 * 120.00288 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5711 -0.7360 -1.2356 6 1 3.9457 0.2871 -1.2672 7 8 4.0534 -1.4565 -2.3714 8 6 4.0549 -1.4187 0.0467 9 6 3.4873 -0.6779 1.2596 10 7 2.0193 -0.6917 1.1994 11 6 1.4373 -0.1105 2.4166 12 6 1.6697 -1.0577 3.5954 13 6 1.0630 -0.4527 4.8630 14 6 1.2913 -1.3859 6.0241 15 1 1.8163 -2.3175 5.8729 16 6 0.8300 -1.0503 7.2793 17 7 0.1912 0.0843 7.4634 18 14 1.1137 -2.2068 8.7186 19 1 1.8520 -3.4074 8.2509 20 1 1.9086 -1.5117 9.7628 21 1 -0.1946 -2.6207 9.2863 22 1 -0.3633 -1.0194 0.1304 23 1 -0.3633 0.6226 0.8176 24 1 -0.3633 0.3967 -0.9479 25 1 1.6896 -0.1981 -2.1399 26 1 1.6660 -1.7447 -1.2576 27 1 5.0175 -1.5094 -2.4232 28 1 3.7126 -2.4534 0.0595 29 1 5.1440 -1.3951 0.0829 30 1 3.8189 -1.1702 2.1738 31 1 3.8412 0.3531 1.2537 32 1 1.9105 0.8494 2.6230 33 1 0.3667 0.0355 2.2734 34 1 1.1964 -2.0177 3.3890 35 1 2.7403 -1.2037 3.7386 36 1 1.5358 0.5074 5.0697 37 1 -0.0078 -0.3070 4.7196 38 1 -0.1331 0.3207 8.3466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602930463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -71.467393 kcal Electronic energy + Delta-G solvation = -16155.222459 eV Core-core repulsion = 13610.554194 eV Total energy + Delta-G solvation = -2544.668265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52309 -36.78626 -34.13940 -32.47861 -32.27750 -30.30110 -27.19248 -26.24928 -23.83892 -22.37655 -21.28045 -19.86102 -19.69290 -17.25947 -16.35162 -15.74605 -15.40167 -14.71336 -14.44333 -14.22865 -13.85311 -13.55416 -13.40128 -12.33612 -12.23645 -11.98740 -11.84384 -11.74405 -11.59556 -11.22274 -11.04555 -10.88152 -10.71064 -10.62753 -10.45124 -10.21031 -9.92743 -9.50956 -9.29628 -9.01774 -8.32395 -8.03993 -5.97604 -3.99357 3.32587 3.39984 3.44634 3.99045 4.09458 4.48880 4.72949 4.75602 5.01632 5.07655 5.29289 5.37892 5.38427 5.47975 5.49132 5.66811 5.77960 5.83016 5.88944 5.92074 6.03936 6.09532 6.15126 6.19660 6.34806 6.42668 6.73781 6.83509 7.16643 7.40714 7.43974 7.49027 7.71723 7.86669 8.03287 8.47033 9.08191 9.64628 11.13929 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046824 B = 0.004938 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.844279 B = 5668.392255 C = 6065.248924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.102 4.102 5 C 0.103 3.897 6 H 0.049 0.951 7 O -0.569 6.569 8 C -0.147 4.147 9 C 0.056 3.944 10 N -0.534 5.534 11 C 0.050 3.950 12 C -0.103 4.103 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.375 0.625 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 0.266 -16.835 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.140 4.140 5 C 0.044 3.956 6 H 0.067 0.933 7 O -0.374 6.374 8 C -0.186 4.186 9 C -0.072 4.072 10 N -0.260 5.260 11 C -0.076 4.076 12 C -0.141 4.141 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.222 0.778 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.011 -0.172 -16.849 17.580 hybrid contribution 1.042 0.407 1.140 1.597 sum 6.053 0.235 -15.710 16.837 Atomic orbital electron populations 1.21909 0.93918 1.03135 1.01553 1.21517 0.95834 0.95039 0.90143 0.94576 1.21578 0.92877 1.02555 0.97023 1.21892 0.95272 0.93676 0.84749 0.93311 1.86507 1.26377 1.77982 1.46582 1.22315 0.99808 1.01701 0.94736 1.22052 0.88060 0.98463 0.98645 1.62075 1.06446 1.55194 1.02242 1.22404 0.99675 0.96438 0.89122 1.21631 1.00207 0.98208 0.94044 1.19084 0.95956 0.95994 0.90616 1.21295 1.35929 1.05016 0.93260 0.92648 1.25025 0.95297 0.95267 0.98932 1.69975 1.38640 1.22451 1.22590 0.86554 0.77892 0.81090 0.82579 1.19729 1.21076 1.21024 0.91367 0.91896 0.92432 0.91295 0.90272 0.77829 0.90176 0.91667 0.89571 0.95269 0.95432 0.90484 0.92633 0.93639 0.96889 0.96631 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.56 37.16 0.32 -1.48 16 2 C 0.08 1.08 2.44 -67.72 -0.17 0.92 16 3 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.10 -1.22 5.03 -26.64 -0.13 -1.36 16 5 C 0.10 1.15 3.54 -26.61 -0.09 1.05 16 6 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 7 O -0.57 -6.15 13.33 -35.23 -0.47 -6.62 16 8 C -0.15 -1.69 5.72 -26.65 -0.15 -1.84 16 9 C 0.06 0.77 5.31 -3.79 -0.02 0.75 16 10 N -0.53 -8.11 4.46 -226.62 -1.01 -9.12 16 11 C 0.05 0.89 4.75 -3.82 -0.02 0.87 16 12 C -0.10 -2.17 5.18 -26.73 -0.14 -2.31 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.38 2.43 9.08 45.56 0.41 2.84 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.28 6.42 -51.93 -0.33 0.94 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 1.34 5.61 -51.93 -0.29 1.05 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.94 6.59 -51.93 -0.34 0.60 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -31.18 297.98 -8.15 -39.33 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.92 Total: -1.82 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -0.95 Total: -16.64 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.27 Total: -35.61 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.47 Total: -6.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.18 -8.15 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602930463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.135 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds