Wall clock time and date at job start Mon Mar 30 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.45106 * 2 1 4 4 C 1.53041 * 109.46306 * 240.02666 * 2 1 3 5 5 C 1.53128 * 109.27558 * 180.80298 * 4 2 1 6 6 H 1.09001 * 109.52324 * 297.74956 * 5 4 2 7 7 O 1.42897 * 109.57331 * 177.59108 * 5 4 2 8 8 C 1.53115 * 109.16100 * 57.65491 * 5 4 2 9 9 C 1.53035 * 109.31165 * 302.32563 * 8 5 4 10 10 N 1.46846 * 109.46494 * 119.97418 * 2 1 3 11 11 C 1.46906 * 110.99751 * 305.85712 * 10 2 1 12 12 C 1.53001 * 109.46936 * 165.48234 * 11 10 2 13 13 C 1.53000 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47346 * 179.97438 * 13 12 11 15 15 H 1.07990 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99780 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99493 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47407 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46976 * 120.00390 * 18 16 14 21 21 H 1.48502 * 109.47134 * 239.99698 * 18 16 14 22 22 H 1.09002 * 109.46978 * 187.28867 * 1 2 3 23 23 H 1.08993 * 109.47041 * 307.28847 * 1 2 3 24 24 H 1.08995 * 109.47202 * 67.29092 * 1 2 3 25 25 H 1.08995 * 109.50306 * 60.86804 * 4 2 1 26 26 H 1.09000 * 109.50215 * 300.74099 * 4 2 1 27 27 H 0.96695 * 114.00370 * 180.28729 * 7 5 4 28 28 H 1.08998 * 109.50407 * 62.28264 * 8 5 4 29 29 H 1.08994 * 109.50447 * 182.36377 * 8 5 4 30 30 H 1.09002 * 109.46235 * 179.21667 * 9 8 5 31 31 H 1.08998 * 109.46089 * 299.18003 * 9 8 5 32 32 H 1.09001 * 109.47105 * 285.47954 * 11 10 2 33 33 H 1.08996 * 109.47314 * 45.48152 * 11 10 2 34 34 H 1.09001 * 109.46995 * 299.99787 * 12 11 10 35 35 H 1.08996 * 109.47186 * 59.99840 * 12 11 10 36 36 H 1.09001 * 109.46900 * 299.99706 * 13 12 11 37 37 H 1.09006 * 109.47408 * 59.99620 * 13 12 11 38 38 H 0.97005 * 120.00288 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5711 -0.7360 -1.2356 6 1 3.9457 0.2871 -1.2672 7 8 4.0534 -1.4565 -2.3714 8 6 4.0549 -1.4187 0.0467 9 6 3.4873 -0.6779 1.2596 10 7 2.0193 -0.6917 1.1994 11 6 1.4373 -0.1105 2.4166 12 6 1.6697 -1.0577 3.5954 13 6 1.0630 -0.4527 4.8630 14 6 1.2913 -1.3859 6.0241 15 1 1.8163 -2.3175 5.8729 16 6 0.8300 -1.0503 7.2793 17 7 0.1912 0.0843 7.4634 18 14 1.1137 -2.2068 8.7186 19 1 1.8520 -3.4074 8.2509 20 1 1.9086 -1.5117 9.7628 21 1 -0.1946 -2.6207 9.2863 22 1 -0.3633 -1.0194 0.1304 23 1 -0.3633 0.6226 0.8176 24 1 -0.3633 0.3967 -0.9479 25 1 1.6896 -0.1981 -2.1399 26 1 1.6660 -1.7447 -1.2576 27 1 5.0175 -1.5094 -2.4232 28 1 3.7126 -2.4534 0.0595 29 1 5.1440 -1.3951 0.0829 30 1 3.8189 -1.1702 2.1738 31 1 3.8412 0.3531 1.2537 32 1 1.9105 0.8494 2.6230 33 1 0.3667 0.0355 2.2734 34 1 1.1964 -2.0177 3.3890 35 1 2.7403 -1.2037 3.7386 36 1 1.5358 0.5074 5.0697 37 1 -0.0078 -0.3070 4.7196 38 1 -0.1331 0.3207 8.3466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602930463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:26 Heat of formation + Delta-G solvation = -93.574587 kcal Electronic energy + Delta-G solvation = -16156.181099 eV Core-core repulsion = 13610.554194 eV Total energy + Delta-G solvation = -2545.626905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58054 -37.78747 -35.93492 -34.15482 -33.33442 -31.86551 -28.40485 -27.83739 -25.30678 -23.84333 -22.38996 -21.54947 -20.72559 -18.48529 -18.09111 -16.99443 -16.59259 -16.40995 -15.80007 -15.41349 -15.17734 -14.75620 -14.43233 -14.29116 -13.61260 -13.44229 -13.11064 -12.85987 -12.77881 -12.66530 -12.54728 -12.46043 -12.22464 -12.06010 -11.79148 -11.49363 -11.36322 -11.12800 -11.07480 -10.72454 -10.54708 -9.25218 -8.20195 -6.31024 1.39769 1.40206 1.53792 2.40903 2.88156 3.12997 3.24675 3.77712 3.80495 4.02747 4.11465 4.24593 4.27734 4.40173 4.47515 4.51423 4.60604 4.71044 4.82279 4.84548 4.91381 4.94643 5.01812 5.04110 5.14322 5.19614 5.24703 5.30554 5.41212 5.53269 5.74979 5.86310 6.11830 6.24564 6.29318 6.85825 6.89372 7.38249 8.91953 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046824 B = 0.004938 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.844279 B = 5668.392255 C = 6065.248924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.083 3.917 3 H 0.041 0.959 4 C -0.100 4.100 5 C 0.107 3.893 6 H 0.061 0.939 7 O -0.581 6.581 8 C -0.139 4.139 9 C 0.052 3.948 10 N -0.543 5.543 11 C 0.063 3.937 12 C -0.087 4.087 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.057 0.943 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.394 0.606 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.023 0.977 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.047 0.953 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -0.283 -17.697 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.059 0.941 4 C -0.138 4.138 5 C 0.048 3.952 6 H 0.079 0.921 7 O -0.389 6.389 8 C -0.177 4.177 9 C -0.076 4.076 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.244 0.756 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.008 0.992 37 H 0.011 0.989 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.009 -0.727 -17.736 18.740 hybrid contribution 0.747 0.597 1.367 1.668 sum 6.755 -0.130 -16.368 17.708 Atomic orbital electron populations 1.21904 0.93528 1.02462 1.02482 1.21596 0.96234 0.95206 0.89489 0.94059 1.21541 0.93795 1.01703 0.96751 1.21805 0.94618 0.94241 0.84557 0.92103 1.86466 1.28400 1.77934 1.46117 1.22254 1.01154 1.00426 0.93876 1.22109 0.87189 0.99019 0.99262 1.62021 1.07437 1.55455 1.01896 1.22111 0.99950 0.95212 0.89211 1.21369 0.99645 0.98221 0.93280 1.18976 0.94554 0.94957 0.92692 1.21709 1.36220 1.05533 0.94499 0.92439 1.25970 0.94762 0.96973 1.02066 1.70099 1.39410 1.24288 1.23595 0.85402 0.78103 0.78962 0.78600 1.18705 1.20251 1.20289 0.92356 0.92867 0.90072 0.89895 0.91612 0.75601 0.91567 0.89244 0.91066 0.94679 0.95847 0.90521 0.93254 0.93412 0.99152 0.98947 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.56 71.98 0.62 -2.80 16 2 C 0.08 2.03 2.44 44.94 0.11 2.14 16 3 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.10 -2.19 5.03 30.65 0.15 -2.04 16 5 C 0.11 2.10 3.54 30.68 0.11 2.21 16 6 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 7 O -0.58 -10.95 13.33 -148.98 -1.99 -12.94 16 8 C -0.14 -2.91 5.72 30.64 0.18 -2.74 16 9 C 0.05 1.38 5.31 86.31 0.46 1.84 16 10 N -0.54 -16.13 4.46 -870.88 -3.88 -20.01 16 11 C 0.06 2.22 4.75 86.30 0.41 2.63 16 12 C -0.09 -3.74 5.18 30.59 0.16 -3.58 16 13 C 0.03 1.40 4.97 29.85 0.15 1.54 16 14 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 15 H 0.06 3.25 7.74 -2.92 -0.02 3.22 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.33 6.46 -2.39 -0.02 1.32 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.39 3.90 9.08 -74.06 -0.67 3.23 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 2.08 6.42 -2.39 -0.02 2.06 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 33 H 0.08 2.71 5.61 -2.39 -0.01 2.70 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 2.00 6.59 -2.39 -0.02 1.99 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H -0.01 -0.46 8.14 -2.38 -0.02 -0.47 16 38 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -66.57 297.98 -0.18 -66.75 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.34 Total: 8.18 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.03 Total: -31.69 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.60 Total: -77.20 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.99 Total: -12.94 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.57 -0.18 -66.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602930463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.823 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds