Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.44830 * 2 1 4 4 C 1.53033 * 109.46414 * 240.02128 * 2 1 3 5 5 C 1.53121 * 109.28088 * 299.16629 * 4 2 1 6 6 C 1.53122 * 109.15732 * 302.34218 * 5 4 2 7 7 H 1.08996 * 109.54177 * 297.69943 * 6 5 4 8 8 C 1.52999 * 109.50187 * 177.59272 * 6 5 4 9 9 O 1.42905 * 109.46728 * 65.20317 * 8 6 5 10 10 C 1.53042 * 109.27479 * 57.65849 * 6 5 4 11 11 N 1.46845 * 109.45824 * 119.96716 * 2 1 3 12 12 C 1.46893 * 111.00186 * 294.17927 * 11 2 1 13 13 C 1.53002 * 109.47042 * 190.25646 * 12 11 2 14 14 C 1.50709 * 109.47086 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99797 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00244 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47045 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46934 * 119.99975 * 18 16 14 21 21 H 1.48501 * 109.47223 * 240.00212 * 18 16 14 22 22 H 1.08994 * 109.47851 * 300.02983 * 1 2 3 23 23 H 1.09001 * 109.46785 * 60.03150 * 1 2 3 24 24 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.50396 * 59.10562 * 4 2 1 26 26 H 1.09000 * 109.50460 * 179.17845 * 4 2 1 27 27 H 1.09001 * 109.52298 * 182.44287 * 5 4 2 28 28 H 1.08995 * 109.52203 * 62.24887 * 5 4 2 29 29 H 1.09000 * 109.47486 * 305.20255 * 8 6 5 30 30 H 1.09001 * 109.47362 * 185.19532 * 8 6 5 31 31 H 0.96696 * 114.00036 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46318 * 60.83328 * 10 6 5 33 33 H 1.09007 * 109.45810 * 180.81407 * 10 6 5 34 34 H 1.08996 * 109.47720 * 310.25445 * 12 11 2 35 35 H 1.09001 * 109.47423 * 70.25715 * 12 11 2 36 36 H 1.08993 * 109.47363 * 300.00095 * 13 12 11 37 37 H 1.08996 * 109.47143 * 60.00235 * 13 12 11 38 38 H 0.97001 * 120.00066 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 1.5443 -2.1697 -1.2354 6 6 2.0270 -2.8532 0.0469 7 1 3.1166 -2.8756 0.0602 8 6 1.4859 -4.2834 0.0982 9 8 2.0541 -5.0461 -0.9684 10 6 1.5173 -2.0704 1.2592 11 7 2.0192 -0.6916 1.1995 12 6 1.6650 0.0508 2.4165 13 6 2.4008 -0.5529 3.6145 14 6 2.0379 0.2092 4.8630 15 1 1.3508 1.0405 4.8076 16 6 2.5831 -0.1551 6.0759 17 7 3.4202 -1.1671 6.1432 18 14 2.1338 0.7899 7.6234 19 1 1.1806 1.8759 7.2809 20 1 1.5021 -0.1325 8.6007 21 1 3.3610 1.3772 8.2186 22 1 -0.3634 0.5142 0.8896 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.6638 -0.2165 -2.1399 26 1 3.1299 -0.7086 -1.2579 27 1 1.9410 -2.6990 -2.1018 28 1 0.4549 -2.1822 -1.2671 29 1 0.4010 -4.2654 -0.0058 30 1 1.7520 -4.7386 1.0522 31 1 1.7553 -5.9652 -0.9973 32 1 0.4274 -2.0607 1.2532 33 1 1.8714 -2.5463 2.1738 34 1 1.9535 1.0956 2.3018 35 1 0.5893 -0.0131 2.5810 36 1 2.1124 -1.5976 3.7293 37 1 3.4764 -0.4889 3.4500 38 1 3.8034 -1.4236 6.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = -67.991768 kcal Electronic energy + Delta-G solvation = -16540.280273 eV Core-core repulsion = 13995.762722 eV Total energy + Delta-G solvation = -2544.517551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51609 -36.77665 -34.11216 -32.63481 -31.97130 -29.15311 -27.61222 -25.24728 -24.57034 -23.05202 -21.03102 -20.05865 -18.45395 -17.14859 -16.50403 -15.47689 -14.93901 -14.76423 -14.46925 -14.28609 -13.93186 -13.01749 -12.86685 -12.56634 -12.41659 -12.37352 -12.09611 -11.62871 -11.11375 -11.10057 -10.92908 -10.79471 -10.56097 -10.43228 -10.18300 -9.96653 -9.86719 -9.69720 -9.25661 -9.07836 -8.31472 -7.60326 -5.98249 -4.00414 3.31711 3.39155 3.43095 4.12511 4.45623 4.67675 4.91494 5.05465 5.13004 5.36516 5.37646 5.41904 5.55930 5.58132 5.68846 5.73191 5.87110 5.94599 5.97299 6.06138 6.14765 6.22003 6.29794 6.38462 6.42157 6.56116 6.60994 6.73358 7.01315 7.57267 7.60842 7.67397 7.85090 7.93724 8.11601 8.45859 9.07233 9.63161 11.13123 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.006317 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.021496 B = 4431.228897 C = 5025.780986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.084 4.084 7 H 0.084 0.916 8 C 0.081 3.919 9 O -0.573 6.573 10 C 0.059 3.941 11 N -0.530 5.530 12 C 0.064 3.936 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.375 0.625 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.016 0.984 37 H 0.024 0.976 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -3.751 -13.718 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.103 4.103 7 H 0.103 0.897 8 C 0.002 3.998 9 O -0.378 6.378 10 C -0.069 4.069 11 N -0.253 5.253 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.508 -3.276 -13.736 14.823 hybrid contribution -1.438 -0.013 1.198 1.871 sum -5.946 -3.289 -12.538 14.261 Atomic orbital electron populations 1.22501 0.98373 1.01993 1.01687 1.21689 0.92277 0.98057 0.91136 0.90469 1.21588 1.01389 0.95366 0.96454 1.21559 1.00006 0.95485 0.97578 1.21159 1.02056 0.91721 0.95351 0.89731 1.22211 0.96032 0.92200 0.89318 1.86475 1.72144 1.26363 1.52805 1.22025 0.96903 0.90017 0.97937 1.62146 1.59139 1.01572 1.02459 1.22318 0.97530 0.97094 0.89356 1.19114 0.96208 0.95842 0.89872 1.21239 1.26748 1.15419 0.92517 0.92794 1.24993 0.95120 0.95195 0.99026 1.69984 1.30637 1.27292 1.25329 0.86555 0.78259 0.79935 0.83352 1.19799 1.21078 1.20984 0.92432 0.92855 0.92270 0.92206 0.91281 0.91778 0.92587 0.94041 0.93297 0.77941 0.95122 0.89621 0.92156 0.96078 0.96560 0.95727 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 8.18 37.16 0.30 -2.28 16 2 C 0.08 1.18 2.92 -67.72 -0.20 0.98 16 3 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 4 C -0.11 -1.47 5.61 -26.65 -0.15 -1.62 16 5 C -0.11 -1.44 4.85 -26.61 -0.13 -1.57 16 6 C -0.08 -1.24 2.59 -90.54 -0.23 -1.47 16 7 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 8 C 0.08 1.02 6.43 37.16 0.24 1.25 16 9 O -0.57 -6.91 13.25 -35.23 -0.47 -7.38 16 10 C 0.06 1.01 4.28 -3.83 -0.02 1.00 16 11 N -0.53 -9.77 4.60 -226.69 -1.04 -10.81 16 12 C 0.06 1.36 4.35 -3.83 -0.02 1.34 16 13 C 0.03 0.71 4.91 -27.88 -0.14 0.57 16 14 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H 0.06 0.86 6.78 -51.93 -0.35 0.51 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.82 4.80 -51.93 -0.25 0.57 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 28 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.37 2.70 9.12 45.56 0.42 3.12 16 32 H 0.03 0.51 6.19 -51.93 -0.32 0.18 16 33 H 0.09 1.65 6.22 -51.93 -0.32 1.33 16 34 H 0.06 1.28 7.98 -51.93 -0.41 0.87 16 35 H 0.02 0.45 6.97 -51.93 -0.36 0.08 16 36 H 0.02 0.44 6.44 -51.93 -0.33 0.11 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -31.01 290.70 -7.77 -38.78 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.61 Total: -0.07 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.75 Total: -15.38 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.31 Total: -37.07 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.47 Total: -7.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.01 -7.77 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.209 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds