Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.44830 * 2 1 4 4 C 1.53033 * 109.46414 * 240.02128 * 2 1 3 5 5 C 1.53121 * 109.28088 * 299.16629 * 4 2 1 6 6 C 1.53122 * 109.15732 * 302.34218 * 5 4 2 7 7 H 1.08996 * 109.54177 * 297.69943 * 6 5 4 8 8 C 1.52999 * 109.50187 * 177.59272 * 6 5 4 9 9 O 1.42905 * 109.46728 * 65.20317 * 8 6 5 10 10 C 1.53042 * 109.27479 * 57.65849 * 6 5 4 11 11 N 1.46845 * 109.45824 * 119.96716 * 2 1 3 12 12 C 1.46893 * 111.00186 * 294.17927 * 11 2 1 13 13 C 1.53002 * 109.47042 * 190.25646 * 12 11 2 14 14 C 1.50709 * 109.47086 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99797 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00244 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47045 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46934 * 119.99975 * 18 16 14 21 21 H 1.48501 * 109.47223 * 240.00212 * 18 16 14 22 22 H 1.08994 * 109.47851 * 300.02983 * 1 2 3 23 23 H 1.09001 * 109.46785 * 60.03150 * 1 2 3 24 24 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.50396 * 59.10562 * 4 2 1 26 26 H 1.09000 * 109.50460 * 179.17845 * 4 2 1 27 27 H 1.09001 * 109.52298 * 182.44287 * 5 4 2 28 28 H 1.08995 * 109.52203 * 62.24887 * 5 4 2 29 29 H 1.09000 * 109.47486 * 305.20255 * 8 6 5 30 30 H 1.09001 * 109.47362 * 185.19532 * 8 6 5 31 31 H 0.96696 * 114.00036 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46318 * 60.83328 * 10 6 5 33 33 H 1.09007 * 109.45810 * 180.81407 * 10 6 5 34 34 H 1.08996 * 109.47720 * 310.25445 * 12 11 2 35 35 H 1.09001 * 109.47423 * 70.25715 * 12 11 2 36 36 H 1.08993 * 109.47363 * 300.00095 * 13 12 11 37 37 H 1.08996 * 109.47143 * 60.00235 * 13 12 11 38 38 H 0.97001 * 120.00066 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 1.5443 -2.1697 -1.2354 6 6 2.0270 -2.8532 0.0469 7 1 3.1166 -2.8756 0.0602 8 6 1.4859 -4.2834 0.0982 9 8 2.0541 -5.0461 -0.9684 10 6 1.5173 -2.0704 1.2592 11 7 2.0192 -0.6916 1.1995 12 6 1.6650 0.0508 2.4165 13 6 2.4008 -0.5529 3.6145 14 6 2.0379 0.2092 4.8630 15 1 1.3508 1.0405 4.8076 16 6 2.5831 -0.1551 6.0759 17 7 3.4202 -1.1671 6.1432 18 14 2.1338 0.7899 7.6234 19 1 1.1806 1.8759 7.2809 20 1 1.5021 -0.1325 8.6007 21 1 3.3610 1.3772 8.2186 22 1 -0.3634 0.5142 0.8896 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.6638 -0.2165 -2.1399 26 1 3.1299 -0.7086 -1.2579 27 1 1.9410 -2.6990 -2.1018 28 1 0.4549 -2.1822 -1.2671 29 1 0.4010 -4.2654 -0.0058 30 1 1.7520 -4.7386 1.0522 31 1 1.7553 -5.9652 -0.9973 32 1 0.4274 -2.0607 1.2532 33 1 1.8714 -2.5463 2.1738 34 1 1.9535 1.0956 2.3018 35 1 0.5893 -0.0131 2.5810 36 1 2.1124 -1.5976 3.7293 37 1 3.4764 -0.4889 3.4500 38 1 3.8034 -1.4236 6.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = -90.645561 kcal Electronic energy + Delta-G solvation = -16541.262615 eV Core-core repulsion = 13995.762722 eV Total energy + Delta-G solvation = -2545.499893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80262 -37.82078 -35.85942 -34.33535 -33.31462 -30.96119 -28.81290 -26.86051 -25.95577 -24.60374 -22.32350 -21.75505 -19.67236 -18.57361 -18.14333 -16.92596 -16.58941 -16.06526 -15.84016 -15.63993 -15.36782 -14.52147 -14.24990 -13.98168 -13.90329 -13.65840 -13.41363 -13.10482 -12.92554 -12.79386 -12.42045 -12.26547 -12.04344 -11.82434 -11.66157 -11.39015 -11.25333 -11.09305 -11.01616 -10.77575 -10.52489 -9.06536 -8.20046 -6.31427 1.39752 1.40396 1.53660 2.40013 2.94110 3.13236 3.51993 3.76972 3.90450 4.02135 4.25943 4.27661 4.38129 4.45500 4.54912 4.57436 4.58030 4.64609 4.72843 4.79857 4.91195 4.94960 5.04867 5.12706 5.13766 5.23021 5.24325 5.42015 5.46769 5.56621 5.69179 5.80588 6.13603 6.37193 6.41394 6.86122 6.92962 7.37728 8.92299 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.006317 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.021496 B = 4431.228897 C = 5025.780986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.106 4.106 5 C -0.101 4.101 6 C -0.082 4.082 7 H 0.059 0.941 8 C 0.086 3.914 9 O -0.585 6.585 10 C 0.064 3.936 11 N -0.546 5.546 12 C 0.082 3.918 13 C 0.036 3.964 14 C -0.543 4.543 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.396 0.604 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.024 0.976 36 H -0.006 1.006 37 H -0.012 1.012 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -3.203 -14.748 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.035 4.035 3 H 0.094 0.906 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.101 4.101 7 H 0.078 0.922 8 C 0.008 3.992 9 O -0.394 6.394 10 C -0.064 4.064 11 N -0.270 5.270 12 C -0.045 4.045 13 C -0.002 4.002 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.246 0.754 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.013 0.987 37 H 0.007 0.993 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.049 -2.743 -14.792 16.214 hybrid contribution -0.916 -0.233 1.474 1.751 sum -6.965 -2.976 -13.318 15.321 Atomic orbital electron populations 1.22424 0.96808 1.02291 1.02315 1.21827 0.93582 0.97910 0.90207 0.90555 1.21581 1.00749 0.95567 0.96423 1.21513 1.00737 0.95099 0.96493 1.21085 1.00552 0.93267 0.95174 0.92224 1.22064 0.96896 0.90913 0.89357 1.86412 1.72547 1.28124 1.52270 1.21931 0.97313 0.89390 0.97726 1.62048 1.60208 1.02213 1.02524 1.21918 0.96689 0.96838 0.89059 1.18940 0.94429 0.94891 0.91918 1.21653 1.27007 1.15815 0.93645 0.92218 1.25971 0.94808 0.96105 1.02821 1.70124 1.31699 1.28915 1.26475 0.85374 0.78255 0.78656 0.78592 1.18543 1.20295 1.20384 0.93859 0.90162 0.92079 0.89279 0.92463 0.91104 0.91218 0.92121 0.93940 0.75396 0.94120 0.93039 0.92178 0.95832 0.98742 0.99319 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 8.18 71.98 0.59 -3.95 16 2 C 0.07 2.12 2.92 44.94 0.13 2.25 16 3 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 4 C -0.11 -2.58 5.61 30.65 0.17 -2.41 16 5 C -0.10 -2.44 4.85 30.68 0.15 -2.29 16 6 C -0.08 -2.38 2.59 -10.74 -0.03 -2.41 16 7 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 8 C 0.09 2.07 6.43 71.98 0.46 2.54 16 9 O -0.59 -13.07 13.25 -148.98 -1.97 -15.04 16 10 C 0.06 2.24 4.28 86.33 0.37 2.61 16 11 N -0.55 -20.39 4.60 -871.11 -4.01 -24.40 16 12 C 0.08 3.59 4.35 86.31 0.38 3.96 16 13 C 0.04 1.96 4.91 29.85 0.15 2.10 16 14 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H 0.04 1.21 6.78 -2.39 -0.02 1.19 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 1.51 4.80 -2.39 -0.01 1.50 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.66 7.90 -2.39 -0.02 1.64 16 28 H 0.07 1.52 6.56 -2.39 -0.02 1.51 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.40 4.87 9.12 -74.06 -0.68 4.19 16 32 H 0.04 1.32 6.19 -2.39 -0.01 1.30 16 33 H 0.05 2.11 6.22 -2.38 -0.01 2.10 16 34 H 0.06 2.59 7.98 -2.39 -0.02 2.57 16 35 H 0.02 1.01 6.97 -2.39 -0.02 0.99 16 36 H -0.01 -0.33 6.44 -2.39 -0.02 -0.35 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -67.72 290.70 -0.25 -67.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.35 Total: 10.55 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.06 Total: -28.41 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.72 Total: -81.86 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.97 Total: -15.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.72 -0.25 -67.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.667 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds