Wall clock time and date at job start Mon Mar 30 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.55143 * 2 1 4 4 C 1.55342 * 110.71706 * 237.02341 * 2 1 3 5 5 C 1.54810 * 101.93321 * 204.39082 * 4 2 1 6 6 H 1.08996 * 110.48969 * 262.18051 * 5 4 2 7 7 C 1.52994 * 110.48889 * 139.66306 * 5 4 2 8 8 N 1.46898 * 109.47187 * 68.25968 * 7 5 4 9 9 C 1.46898 * 110.99870 * 199.87299 * 8 7 5 10 10 C 1.46902 * 110.99883 * 75.92261 * 8 7 5 11 11 C 1.50702 * 109.46944 * 189.99920 * 10 8 7 12 12 H 1.08004 * 119.99783 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00076 * 180.02562 * 11 10 8 14 14 N 1.31521 * 119.99990 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00226 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47056 * 90.00226 * 15 13 11 17 17 H 1.48491 * 109.47656 * 210.00483 * 15 13 11 18 18 H 1.48505 * 109.46895 * 330.00247 * 15 13 11 19 19 C 1.54101 * 104.30246 * 20.92095 * 5 4 2 20 20 H 1.09003 * 109.87966 * 242.39134 * 19 5 4 21 21 C 1.53001 * 109.87988 * 121.38845 * 19 5 4 22 22 O 1.43742 * 107.29333 * 1.96230 * 19 5 4 23 23 H 1.09007 * 109.46743 * 298.57339 * 1 2 3 24 24 H 1.09000 * 109.46974 * 58.57218 * 1 2 3 25 25 H 1.08996 * 109.47286 * 178.57830 * 1 2 3 26 26 H 1.09002 * 111.00527 * 86.24060 * 4 2 1 27 27 H 1.08997 * 110.96296 * 322.52869 * 4 2 1 28 28 H 1.09006 * 109.47184 * 188.26377 * 7 5 4 29 29 H 1.08999 * 109.47413 * 308.25869 * 7 5 4 30 30 H 1.09004 * 109.47421 * 64.66602 * 9 8 7 31 31 H 1.09002 * 109.47271 * 184.66625 * 9 8 7 32 32 H 1.08996 * 109.47543 * 304.66642 * 9 8 7 33 33 H 1.09000 * 109.47248 * 309.99850 * 10 8 7 34 34 H 1.09003 * 109.47016 * 70.00133 * 10 8 7 35 35 H 0.97004 * 119.99738 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46680 * 59.99908 * 21 19 5 37 37 H 1.09004 * 109.47327 * 179.97438 * 21 19 5 38 38 H 1.08991 * 109.46969 * 299.99862 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0796 -0.7908 -1.2189 5 6 3.4831 -1.2129 -0.7202 6 1 4.2433 -0.5280 -1.0957 7 6 3.7960 -2.6469 -1.1520 8 7 3.9591 -2.6944 -2.6112 9 6 3.7908 -4.0638 -3.1154 10 6 5.2591 -2.1412 -3.0138 11 6 5.2936 -1.9785 -4.5116 12 1 4.4357 -2.2585 -5.1051 13 6 6.4205 -1.4733 -5.1244 14 7 6.4504 -1.3308 -6.4315 15 14 7.9045 -0.9897 -4.0980 16 1 8.8093 -2.1584 -3.9547 17 1 8.6303 0.1188 -4.7685 18 1 7.4536 -0.5450 -2.7548 19 6 3.3852 -1.1211 0.8149 20 1 4.0864 -0.3741 1.1870 21 6 3.6968 -2.4830 1.4385 22 8 2.0385 -0.7336 1.1348 23 1 -0.3633 0.4916 0.9026 24 1 -0.3633 0.5359 -0.8769 25 1 -0.3633 -1.0273 -0.0255 26 1 2.1554 -0.1508 -2.0979 27 1 1.4620 -1.6644 -1.4276 28 1 4.7171 -2.9780 -0.6724 29 1 2.9767 -3.3023 -0.8565 30 1 2.7673 -4.3936 -2.9369 31 1 3.9980 -4.0851 -4.1853 32 1 4.4822 -4.7290 -2.5982 33 1 5.4035 -1.1705 -2.5395 34 1 6.0542 -2.8192 -2.7035 35 1 7.2432 -0.9750 -6.8626 36 1 4.7056 -2.7878 1.1600 37 1 3.6262 -2.4105 2.5239 38 1 2.9812 -3.2209 1.0760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686391448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:27 Heat of formation + Delta-G solvation = -48.941917 kcal Electronic energy + Delta-G solvation = -16662.488206 eV Core-core repulsion = 14118.796719 eV Total energy + Delta-G solvation = -2543.691487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76962 -36.66990 -33.18034 -32.46047 -31.96690 -28.72132 -28.05455 -26.36379 -23.78306 -23.26997 -21.10019 -20.61729 -18.91835 -17.02193 -16.48052 -15.59822 -14.94245 -14.69246 -14.45643 -13.95310 -13.69111 -13.11187 -12.89810 -12.54354 -12.37867 -12.18449 -11.97632 -11.81462 -11.73754 -11.39057 -11.09856 -10.96805 -10.70885 -10.53300 -10.44118 -10.29063 -9.95653 -9.82300 -9.43610 -9.24251 -8.59006 -7.36250 -6.06821 -4.03786 3.25896 3.33932 3.35275 3.93514 4.40045 4.59282 4.87720 4.95573 5.09896 5.23833 5.27788 5.31822 5.39698 5.55662 5.62262 5.70050 5.74761 5.85351 5.93193 6.00960 6.08688 6.10275 6.15490 6.25514 6.30348 6.31677 6.46445 6.53079 6.68779 6.85794 6.97143 7.14845 7.60436 7.90795 8.05546 8.65173 9.02004 9.55249 11.06351 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.007028 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.243285 B = 3983.314139 C = 4038.401886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.065 0.935 4 C -0.124 4.124 5 C -0.114 4.114 6 H 0.085 0.915 7 C 0.063 3.937 8 N -0.532 5.532 9 C 0.036 3.964 10 C 0.161 3.839 11 C -0.508 4.508 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.077 3.923 20 H 0.063 0.937 21 C -0.152 4.152 22 O -0.377 6.377 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.009 0.991 33 H 0.028 0.972 34 H -0.018 1.018 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 0.014 13.685 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.008 3.992 3 H 0.083 0.917 4 C -0.162 4.162 5 C -0.133 4.133 6 H 0.103 0.897 7 C -0.065 4.065 8 N -0.256 5.256 9 C -0.112 4.112 10 C 0.034 3.966 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.193 1.193 19 C 0.019 3.981 20 H 0.081 0.919 21 C -0.209 4.209 22 O -0.297 6.297 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.027 0.973 33 H 0.046 0.954 34 H -0.001 1.001 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.731 0.314 13.511 15.569 hybrid contribution 1.769 -0.117 0.567 1.862 sum -5.961 0.197 14.078 15.289 Atomic orbital electron populations 1.21738 0.93540 1.02694 1.01992 1.23248 0.94812 0.95306 0.85851 0.91711 1.23079 0.95170 1.00482 0.97450 1.22529 0.98753 0.98699 0.93312 0.89658 1.22223 0.99343 0.95028 0.89913 1.61897 1.35135 1.20119 1.08401 1.22246 0.98459 0.88350 1.02153 1.20219 0.84622 0.94103 0.97632 1.21050 1.01749 1.42204 0.89620 0.90126 1.24903 0.98283 0.95405 0.94770 1.69898 1.29341 1.46238 1.08496 0.86881 0.83451 0.78588 0.80930 1.20373 1.21137 1.19251 1.22700 0.84445 0.96390 0.94574 0.91874 1.22006 1.02013 0.96321 1.00531 1.88824 1.27830 1.73744 1.39276 0.92380 0.91169 0.91955 0.89885 0.90464 0.95191 0.91621 0.93415 0.90002 0.97251 0.95416 1.00059 0.92683 0.91131 0.92624 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.67 37.16 0.36 -1.21 16 2 C 0.07 0.87 3.98 -25.48 -0.10 0.76 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.12 -1.85 6.02 -24.54 -0.15 -2.00 16 5 C -0.11 -1.81 3.10 -89.09 -0.28 -2.08 16 6 H 0.09 1.49 6.72 -51.93 -0.35 1.15 16 7 C 0.06 1.07 3.12 -3.83 -0.01 1.06 16 8 N -0.53 -10.95 4.53 -244.37 -1.11 -12.06 16 9 C 0.04 0.69 9.36 60.06 0.56 1.25 16 10 C 0.16 3.86 3.62 -4.97 -0.02 3.84 16 11 C -0.51 -14.32 8.95 -34.44 -0.31 -14.63 16 12 H 0.08 2.47 7.41 -52.48 -0.39 2.08 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 15 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 19 C 0.08 1.09 4.05 -26.16 -0.11 0.98 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.15 -1.89 8.39 37.16 0.31 -1.58 16 22 O -0.38 -5.58 10.89 -35.23 -0.38 -5.96 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 28 H 0.03 0.50 6.38 -51.93 -0.33 0.17 16 29 H 0.07 1.02 6.72 -51.93 -0.35 0.67 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.74 6.67 -51.93 -0.35 1.40 16 32 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 33 H 0.03 0.67 5.66 -51.93 -0.29 0.38 16 34 H -0.02 -0.44 7.55 -51.93 -0.39 -0.84 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 0.85 6.75 -51.93 -0.35 0.50 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.82 6.81 -51.93 -0.35 0.46 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -30.09 293.30 -7.33 -37.42 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.53 Total: -2.16 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 0.17 Total: -11.74 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.33 Total: -38.77 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.38 Total: -5.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.09 -7.33 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686391448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds