Wall clock time and date at job start Mon Mar 30 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.55143 * 2 1 4 4 C 1.55342 * 110.71706 * 237.02341 * 2 1 3 5 5 C 1.54810 * 101.93321 * 204.39082 * 4 2 1 6 6 H 1.08996 * 110.48969 * 262.18051 * 5 4 2 7 7 C 1.52994 * 110.48889 * 139.66306 * 5 4 2 8 8 N 1.46898 * 109.47187 * 68.25968 * 7 5 4 9 9 C 1.46898 * 110.99870 * 199.87299 * 8 7 5 10 10 C 1.46902 * 110.99883 * 75.92261 * 8 7 5 11 11 C 1.50702 * 109.46944 * 189.99920 * 10 8 7 12 12 H 1.08004 * 119.99783 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00076 * 180.02562 * 11 10 8 14 14 N 1.31521 * 119.99990 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00226 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47056 * 90.00226 * 15 13 11 17 17 H 1.48491 * 109.47656 * 210.00483 * 15 13 11 18 18 H 1.48505 * 109.46895 * 330.00247 * 15 13 11 19 19 C 1.54101 * 104.30246 * 20.92095 * 5 4 2 20 20 H 1.09003 * 109.87966 * 242.39134 * 19 5 4 21 21 C 1.53001 * 109.87988 * 121.38845 * 19 5 4 22 22 O 1.43742 * 107.29333 * 1.96230 * 19 5 4 23 23 H 1.09007 * 109.46743 * 298.57339 * 1 2 3 24 24 H 1.09000 * 109.46974 * 58.57218 * 1 2 3 25 25 H 1.08996 * 109.47286 * 178.57830 * 1 2 3 26 26 H 1.09002 * 111.00527 * 86.24060 * 4 2 1 27 27 H 1.08997 * 110.96296 * 322.52869 * 4 2 1 28 28 H 1.09006 * 109.47184 * 188.26377 * 7 5 4 29 29 H 1.08999 * 109.47413 * 308.25869 * 7 5 4 30 30 H 1.09004 * 109.47421 * 64.66602 * 9 8 7 31 31 H 1.09002 * 109.47271 * 184.66625 * 9 8 7 32 32 H 1.08996 * 109.47543 * 304.66642 * 9 8 7 33 33 H 1.09000 * 109.47248 * 309.99850 * 10 8 7 34 34 H 1.09003 * 109.47016 * 70.00133 * 10 8 7 35 35 H 0.97004 * 119.99738 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46680 * 59.99908 * 21 19 5 37 37 H 1.09004 * 109.47327 * 179.97438 * 21 19 5 38 38 H 1.08991 * 109.46969 * 299.99862 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0796 -0.7908 -1.2189 5 6 3.4831 -1.2129 -0.7202 6 1 4.2433 -0.5280 -1.0957 7 6 3.7960 -2.6469 -1.1520 8 7 3.9591 -2.6944 -2.6112 9 6 3.7908 -4.0638 -3.1154 10 6 5.2591 -2.1412 -3.0138 11 6 5.2936 -1.9785 -4.5116 12 1 4.4357 -2.2585 -5.1051 13 6 6.4205 -1.4733 -5.1244 14 7 6.4504 -1.3308 -6.4315 15 14 7.9045 -0.9897 -4.0980 16 1 8.8093 -2.1584 -3.9547 17 1 8.6303 0.1188 -4.7685 18 1 7.4536 -0.5450 -2.7548 19 6 3.3852 -1.1211 0.8149 20 1 4.0864 -0.3741 1.1870 21 6 3.6968 -2.4830 1.4385 22 8 2.0385 -0.7336 1.1348 23 1 -0.3633 0.4916 0.9026 24 1 -0.3633 0.5359 -0.8769 25 1 -0.3633 -1.0273 -0.0255 26 1 2.1554 -0.1508 -2.0979 27 1 1.4620 -1.6644 -1.4276 28 1 4.7171 -2.9780 -0.6724 29 1 2.9767 -3.3023 -0.8565 30 1 2.7673 -4.3936 -2.9369 31 1 3.9980 -4.0851 -4.1853 32 1 4.4822 -4.7290 -2.5982 33 1 5.4035 -1.1705 -2.5395 34 1 6.0542 -2.8192 -2.7035 35 1 7.2432 -0.9750 -6.8626 36 1 4.7056 -2.7878 1.1600 37 1 3.6262 -2.4105 2.5239 38 1 2.9812 -3.2209 1.0760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686391448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:27 Heat of formation + Delta-G solvation = -69.251843 kcal Electronic energy + Delta-G solvation = -16663.368911 eV Core-core repulsion = 14118.796719 eV Total energy + Delta-G solvation = -2544.572192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = -0.30 seconds Orbital eigenvalues (eV) -40.93304 -38.22758 -34.86102 -33.94036 -33.27876 -30.05958 -29.69901 -27.74332 -25.31866 -24.63090 -22.37613 -22.08527 -20.24803 -19.03601 -17.77900 -16.74320 -16.62056 -16.06730 -15.93366 -15.40279 -15.27128 -14.54882 -14.42589 -14.06607 -13.54934 -13.42323 -13.21854 -13.13924 -12.91740 -12.75994 -12.65733 -12.52825 -12.28687 -11.96079 -11.80007 -11.59483 -11.55868 -11.39358 -11.25869 -10.79024 -10.52041 -8.98384 -8.28701 -6.31372 1.32696 1.34418 1.44918 2.33155 2.87478 3.04177 3.19417 3.70673 3.78072 3.99625 4.05918 4.23961 4.38898 4.43968 4.49408 4.52606 4.63043 4.65560 4.72439 4.75727 4.78374 4.94147 4.98581 5.00070 5.05189 5.18598 5.21521 5.23701 5.26191 5.33077 5.34462 5.55801 5.99234 6.06823 6.38296 6.67020 6.75225 7.32168 8.87937 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.007028 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.243285 B = 3983.314139 C = 4038.401886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.070 0.930 4 C -0.123 4.123 5 C -0.116 4.116 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.547 5.547 9 C 0.039 3.961 10 C 0.173 3.827 11 C -0.514 4.514 12 H 0.039 0.961 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.944 3.056 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.249 1.249 19 C 0.079 3.921 20 H 0.070 0.930 21 C -0.149 4.149 22 O -0.386 6.386 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.029 0.971 34 H -0.017 1.017 35 H 0.266 0.734 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 0.007 16.182 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.088 0.912 4 C -0.161 4.161 5 C -0.136 4.136 6 H 0.084 0.916 7 C -0.060 4.060 8 N -0.271 5.271 9 C -0.109 4.109 10 C 0.045 3.955 11 C -0.552 4.552 12 H 0.057 0.943 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.767 3.233 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.173 1.173 19 C 0.021 3.979 20 H 0.088 0.912 21 C -0.206 4.206 22 O -0.306 6.306 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.000 1.000 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.626 0.296 16.028 17.753 hybrid contribution 1.627 -0.142 -0.261 1.654 sum -5.999 0.153 15.767 16.871 Atomic orbital electron populations 1.21740 0.91779 1.02981 1.03112 1.23332 0.96222 0.95038 0.84519 0.91234 1.23032 0.94940 1.00401 0.97726 1.22513 0.98539 0.97589 0.94930 0.91624 1.22292 1.00378 0.96121 0.87233 1.61800 1.33089 1.21017 1.11184 1.22206 1.00515 0.87993 1.00173 1.19950 0.86502 0.94408 0.94608 1.21281 1.00436 1.41642 0.91833 0.94320 1.25825 1.01770 0.95405 0.95930 1.70053 1.30579 1.47680 1.10597 0.85768 0.79179 0.78546 0.79790 1.19340 1.20692 1.17308 1.22727 0.84468 0.97666 0.93067 0.91235 1.21993 1.02229 0.95126 1.01251 1.88820 1.28090 1.73976 1.39729 0.91367 0.89964 0.92092 0.91361 0.90701 0.94397 0.89802 0.90588 0.93286 0.95960 0.95296 0.99952 0.92482 0.90601 0.91381 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.67 71.98 0.70 -2.07 16 2 C 0.07 1.63 3.98 31.40 0.12 1.76 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -3.55 6.02 32.02 0.19 -3.36 16 5 C -0.12 -3.52 3.10 -9.81 -0.03 -3.55 16 6 H 0.07 2.24 6.72 -2.39 -0.02 2.22 16 7 C 0.07 2.13 3.12 86.30 0.27 2.40 16 8 N -0.55 -22.08 4.53 -927.05 -4.20 -26.28 16 9 C 0.04 1.47 9.36 127.69 1.20 2.66 16 10 C 0.17 8.19 3.62 85.56 0.31 8.50 16 11 C -0.51 -29.62 8.95 25.60 0.23 -29.39 16 12 H 0.04 2.49 7.41 -2.91 -0.02 2.47 16 13 C 0.01 0.46 5.47 84.65 0.46 0.92 16 14 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 15 Si 0.94 43.95 27.47 68.60 1.88 45.84 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 19 C 0.08 2.04 4.05 30.97 0.13 2.16 16 20 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.15 -3.26 8.39 71.98 0.60 -2.66 16 22 O -0.39 -10.50 10.89 -148.98 -1.62 -12.13 16 23 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 2.17 7.72 -2.39 -0.02 2.15 16 28 H 0.04 1.16 6.38 -2.38 -0.02 1.14 16 29 H 0.08 2.36 6.72 -2.39 -0.02 2.35 16 30 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 2.13 6.67 -2.39 -0.02 2.12 16 32 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.03 1.37 5.66 -2.39 -0.01 1.36 16 34 H -0.02 -0.81 7.55 -2.39 -0.02 -0.83 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.08 1.58 6.75 -2.39 -0.02 1.56 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.42 6.81 -2.39 -0.02 1.40 16 Total: -1.00 -64.93 293.30 1.49 -63.44 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.95 Total: 10.78 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.18 Total: -22.62 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.90 Total: -85.31 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.62 Total: -12.13 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Total: -64.93 1.49 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686391448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.812 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.30 seconds