Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.50693 * 109.46930 * 239.99661 * 2 1 3 5 5 H 1.07997 * 120.00722 * 245.46270 * 4 2 1 6 6 C 1.37885 * 119.99970 * 65.46444 * 4 2 1 7 7 N 1.31514 * 119.99952 * 9.54579 * 6 4 2 8 8 Si 1.86800 * 120.00144 * 189.54180 * 6 4 2 9 9 H 1.48503 * 109.47027 * 84.99691 * 8 6 4 10 10 H 1.48494 * 109.47210 * 204.99412 * 8 6 4 11 11 H 1.48497 * 109.47265 * 324.99828 * 8 6 4 12 12 N 1.46899 * 109.46741 * 120.00138 * 2 1 3 13 13 C 1.46904 * 110.99955 * 274.99403 * 12 2 1 14 14 C 1.53001 * 109.47050 * 180.02562 * 13 12 2 15 15 H 1.09004 * 110.45524 * 54.30088 * 14 13 12 16 16 C 1.54509 * 110.63005 * 291.61830 * 14 13 12 17 17 C 1.54484 * 104.06392 * 241.30006 * 16 14 13 18 18 H 1.09003 * 110.37036 * 94.84802 * 17 16 14 19 19 C 1.52995 * 110.46475 * 217.13937 * 17 16 14 20 20 O 1.44426 * 104.79835 * 336.02165 * 17 16 14 21 21 C 1.44417 * 105.28083 * 40.50981 * 20 17 16 22 22 H 1.09005 * 110.37200 * 78.31572 * 21 20 17 23 23 C 1.53001 * 110.46879 * 200.60985 * 21 20 17 24 24 H 1.08997 * 109.46676 * 63.75283 * 1 2 3 25 25 H 1.08995 * 109.47271 * 183.76274 * 1 2 3 26 26 H 1.09002 * 109.46870 * 303.76122 * 1 2 3 27 27 H 0.96994 * 120.00344 * 180.02562 * 7 6 4 28 28 H 1.00901 * 110.99674 * 151.04467 * 12 2 1 29 29 H 1.09001 * 109.46533 * 60.00549 * 13 12 2 30 30 H 1.08995 * 109.47172 * 300.00661 * 13 12 2 31 31 H 1.09003 * 110.50864 * 359.94068 * 16 14 13 32 32 H 1.08997 * 110.51558 * 122.65195 * 16 14 13 33 33 H 1.09001 * 109.46716 * 176.88318 * 19 17 16 34 34 H 1.09001 * 109.47601 * 296.89063 * 19 17 16 35 35 H 1.09001 * 109.47263 * 56.88880 * 19 17 16 36 36 H 1.09002 * 109.46887 * 175.44006 * 23 21 20 37 37 H 1.08995 * 109.46704 * 295.43425 * 23 21 20 38 38 H 1.08992 * 109.47232 * 55.43724 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0355 -2.5936 8 14 2.1763 -1.1780 -4.0102 9 1 1.0245 -2.0611 -4.3243 10 1 2.4230 -0.2613 -5.1520 11 1 3.3849 -2.0070 -3.7709 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 3.5467 -1.0184 3.3525 16 6 1.5556 -1.5717 4.0489 17 6 1.1991 -1.1180 5.4820 18 1 0.3072 -0.4914 5.4707 19 6 0.9852 -2.3310 6.3895 20 8 2.3436 -0.3555 5.9230 21 6 2.7454 0.4254 4.7766 22 1 2.0906 1.2887 4.6571 23 6 4.2001 0.8773 4.9202 24 1 -0.3632 0.4545 -0.9217 25 1 -0.3633 -1.0254 0.0674 26 1 -0.3633 0.5711 0.8544 27 1 1.1316 1.4104 -3.4723 28 1 2.9173 -1.1206 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.6728 -1.5474 3.4099 32 1 1.9915 -2.5706 4.0619 33 1 0.7894 -1.9933 7.4072 34 1 0.1348 -2.9095 6.0286 35 1 1.8792 -2.9545 6.3793 36 1 4.5110 1.3949 4.0127 37 1 4.2885 1.5521 5.7716 38 1 4.8369 0.0071 5.0785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686515876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -67.462031 kcal Electronic energy + Delta-G solvation = -16294.881036 eV Core-core repulsion = 13750.386456 eV Total energy + Delta-G solvation = -2544.494580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65016 -36.00236 -33.35348 -32.59241 -31.54638 -29.22307 -27.90411 -25.37991 -24.63224 -22.40497 -21.33625 -20.06152 -19.71077 -16.60924 -15.80968 -15.71597 -15.25852 -14.75978 -14.04898 -13.89451 -13.32840 -13.11669 -12.90739 -12.51543 -12.24892 -12.05592 -11.85336 -11.73904 -11.30158 -11.22954 -10.97310 -10.76819 -10.66545 -10.51316 -10.30480 -10.24697 -10.11432 -9.82588 -9.54658 -8.89379 -8.44756 -7.27748 -6.07299 -4.09461 3.29693 3.35950 3.38488 3.93686 4.39305 4.71522 4.83356 5.03170 5.12153 5.26762 5.29776 5.36600 5.43938 5.57893 5.61240 5.73751 5.75322 5.89708 6.00680 6.07430 6.11337 6.15117 6.25928 6.31003 6.45618 6.56121 6.81006 7.05469 7.07151 7.16115 7.39554 7.77394 7.83599 8.15828 8.34614 8.67046 9.01665 9.55638 11.01970 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042156 B = 0.005489 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.036630 B = 5099.977258 C = 5304.128431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H 0.008 0.992 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.687 5.687 13 C 0.070 3.930 14 C -0.113 4.113 15 H 0.078 0.922 16 C -0.133 4.133 17 C 0.066 3.934 18 H 0.064 0.936 19 C -0.144 4.144 20 O -0.376 6.376 21 C 0.074 3.926 22 H 0.067 0.933 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.007 0.993 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -2.380 13.826 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.318 5.318 13 C -0.060 4.060 14 C -0.132 4.132 15 H 0.097 0.903 16 C -0.171 4.171 17 C 0.009 3.991 18 H 0.082 0.918 19 C -0.201 4.201 20 O -0.296 6.296 21 C 0.016 3.984 22 H 0.085 0.915 23 C -0.201 4.201 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.732 -2.485 14.055 14.292 hybrid contribution 0.777 0.127 -1.399 1.605 sum 1.509 -2.358 12.657 12.962 Atomic orbital electron populations 1.21642 0.98355 0.98740 0.98909 1.19103 0.92089 0.92903 0.85739 0.97476 1.21218 1.35971 1.08163 0.90618 0.92206 1.24925 0.95226 0.94608 0.99063 1.69970 1.44929 1.13978 1.23841 0.86591 0.78749 0.80045 0.82480 1.20500 1.21386 1.19977 1.60701 1.32118 1.33030 1.05946 1.21906 0.99428 0.93848 0.90854 1.22591 0.99548 0.96058 0.94972 0.90335 1.22916 1.00265 0.99049 0.94875 1.23018 0.89292 0.92703 0.94110 0.91796 1.21779 1.02204 0.96714 0.99385 1.89073 1.47196 1.59038 1.34271 1.22979 0.96393 0.93927 0.85081 0.91525 1.21786 0.94507 1.01608 1.02220 0.91916 0.94707 0.97384 0.92897 0.85224 0.91862 0.96143 0.89392 0.91129 0.92353 0.91229 0.91996 0.91056 0.92294 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 9.27 37.16 0.34 -2.53 16 2 C 0.21 5.26 2.47 -68.86 -0.17 5.09 16 3 H 0.01 0.21 7.74 -51.93 -0.40 -0.19 16 4 C -0.52 -14.24 8.48 -34.44 -0.29 -14.53 16 5 H 0.06 1.61 7.69 -52.49 -0.40 1.21 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -25.55 12.16 55.43 0.67 -24.88 16 8 Si 0.89 21.22 29.55 -169.99 -5.02 16.20 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -14.32 6.14 -107.95 -0.66 -14.98 16 13 C 0.07 1.23 4.58 -3.82 -0.02 1.21 16 14 C -0.11 -1.66 2.83 -89.05 -0.25 -1.91 16 15 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 16 C -0.13 -1.87 6.14 -25.16 -0.15 -2.03 16 17 C 0.07 0.86 3.92 -25.95 -0.10 0.76 16 18 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 19 C -0.14 -1.54 9.53 37.16 0.35 -1.18 16 20 O -0.38 -5.47 11.04 -35.23 -0.39 -5.86 16 21 C 0.07 1.02 3.47 -25.95 -0.09 0.93 16 22 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 23 C -0.14 -1.72 9.52 37.16 0.35 -1.36 16 24 H 0.06 1.66 6.83 -51.93 -0.35 1.30 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.01 0.16 7.55 -51.93 -0.39 -0.23 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.33 6.82 8.26 -39.29 -0.32 6.50 16 29 H 0.06 1.15 7.51 -51.93 -0.39 0.76 16 30 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.09 1.35 7.73 -51.93 -0.40 0.95 16 32 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -28.48 303.98 -7.77 -36.24 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.83 Total: 2.58 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.12 Total: -13.88 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.01 Total: -39.86 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.39 Total: -5.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.48 -7.77 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686515876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.221 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds