Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.50693 * 109.46930 * 239.99661 * 2 1 3 5 5 H 1.07997 * 120.00722 * 245.46270 * 4 2 1 6 6 C 1.37885 * 119.99970 * 65.46444 * 4 2 1 7 7 N 1.31514 * 119.99952 * 9.54579 * 6 4 2 8 8 Si 1.86800 * 120.00144 * 189.54180 * 6 4 2 9 9 H 1.48503 * 109.47027 * 84.99691 * 8 6 4 10 10 H 1.48494 * 109.47210 * 204.99412 * 8 6 4 11 11 H 1.48497 * 109.47265 * 324.99828 * 8 6 4 12 12 N 1.46899 * 109.46741 * 120.00138 * 2 1 3 13 13 C 1.46904 * 110.99955 * 274.99403 * 12 2 1 14 14 C 1.53001 * 109.47050 * 180.02562 * 13 12 2 15 15 H 1.09004 * 110.45524 * 54.30088 * 14 13 12 16 16 C 1.54509 * 110.63005 * 291.61830 * 14 13 12 17 17 C 1.54484 * 104.06392 * 241.30006 * 16 14 13 18 18 H 1.09003 * 110.37036 * 94.84802 * 17 16 14 19 19 C 1.52995 * 110.46475 * 217.13937 * 17 16 14 20 20 O 1.44426 * 104.79835 * 336.02165 * 17 16 14 21 21 C 1.44417 * 105.28083 * 40.50981 * 20 17 16 22 22 H 1.09005 * 110.37200 * 78.31572 * 21 20 17 23 23 C 1.53001 * 110.46879 * 200.60985 * 21 20 17 24 24 H 1.08997 * 109.46676 * 63.75283 * 1 2 3 25 25 H 1.08995 * 109.47271 * 183.76274 * 1 2 3 26 26 H 1.09002 * 109.46870 * 303.76122 * 1 2 3 27 27 H 0.96994 * 120.00344 * 180.02562 * 7 6 4 28 28 H 1.00901 * 110.99674 * 151.04467 * 12 2 1 29 29 H 1.09001 * 109.46533 * 60.00549 * 13 12 2 30 30 H 1.08995 * 109.47172 * 300.00661 * 13 12 2 31 31 H 1.09003 * 110.50864 * 359.94068 * 16 14 13 32 32 H 1.08997 * 110.51558 * 122.65195 * 16 14 13 33 33 H 1.09001 * 109.46716 * 176.88318 * 19 17 16 34 34 H 1.09001 * 109.47601 * 296.89063 * 19 17 16 35 35 H 1.09001 * 109.47263 * 56.88880 * 19 17 16 36 36 H 1.09002 * 109.46887 * 175.44006 * 23 21 20 37 37 H 1.08995 * 109.46704 * 295.43425 * 23 21 20 38 38 H 1.08992 * 109.47232 * 55.43724 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0355 -2.5936 8 14 2.1763 -1.1780 -4.0102 9 1 1.0245 -2.0611 -4.3243 10 1 2.4230 -0.2613 -5.1520 11 1 3.3849 -2.0070 -3.7709 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 1 3.5467 -1.0184 3.3525 16 6 1.5556 -1.5717 4.0489 17 6 1.1991 -1.1180 5.4820 18 1 0.3072 -0.4914 5.4707 19 6 0.9852 -2.3310 6.3895 20 8 2.3436 -0.3555 5.9230 21 6 2.7454 0.4254 4.7766 22 1 2.0906 1.2887 4.6571 23 6 4.2001 0.8773 4.9202 24 1 -0.3632 0.4545 -0.9217 25 1 -0.3633 -1.0254 0.0674 26 1 -0.3633 0.5711 0.8544 27 1 1.1316 1.4104 -3.4723 28 1 2.9173 -1.1206 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0461 2.1182 31 1 0.6728 -1.5474 3.4099 32 1 1.9915 -2.5706 4.0619 33 1 0.7894 -1.9933 7.4072 34 1 0.1348 -2.9095 6.0286 35 1 1.8792 -2.9545 6.3793 36 1 4.5110 1.3949 4.0127 37 1 4.2885 1.5521 5.7716 38 1 4.8369 0.0071 5.0785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686515876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -85.452030 kcal Electronic energy + Delta-G solvation = -16295.661141 eV Core-core repulsion = 13750.386456 eV Total energy + Delta-G solvation = -2545.274685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78201 -37.73658 -35.03635 -33.66626 -33.16133 -30.61416 -29.28595 -27.34544 -26.09344 -23.66419 -22.43702 -21.64679 -21.22124 -18.54178 -17.12820 -16.91806 -16.68214 -16.33304 -15.60975 -15.45720 -14.79821 -14.48550 -14.10639 -13.89845 -13.64796 -13.24310 -13.17458 -12.83425 -12.78414 -12.74356 -12.66113 -12.53146 -12.29656 -12.13201 -12.03783 -11.46633 -11.45932 -11.40036 -10.92586 -10.66032 -10.54436 -9.05382 -8.17943 -6.27324 1.41952 1.43999 1.52734 2.41385 2.89811 3.14121 3.40713 3.71790 3.93705 3.98277 4.13364 4.28586 4.41260 4.43657 4.48553 4.58883 4.68585 4.78539 4.83486 4.86552 4.96891 5.03266 5.06936 5.15497 5.17305 5.22103 5.24515 5.31515 5.34486 5.41797 5.66036 5.81149 5.98928 6.14704 6.44475 6.78163 7.00095 7.42464 8.91198 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042156 B = 0.005489 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.036630 B = 5099.977258 C = 5304.128431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.213 3.787 3 H -0.028 1.028 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.680 5.680 13 C 0.075 3.925 14 C -0.106 4.106 15 H 0.080 0.920 16 C -0.131 4.131 17 C 0.064 3.936 18 H 0.067 0.933 19 C -0.140 4.140 20 O -0.386 6.386 21 C 0.074 3.926 22 H 0.066 0.934 23 C -0.141 4.141 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -3.390 14.518 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 H -0.010 1.010 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.311 5.311 13 C -0.055 4.055 14 C -0.125 4.125 15 H 0.099 0.901 16 C -0.169 4.169 17 C 0.007 3.993 18 H 0.085 0.915 19 C -0.197 4.197 20 O -0.306 6.306 21 C 0.016 3.984 22 H 0.084 0.916 23 C -0.199 4.199 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.048 -3.505 14.769 15.215 hybrid contribution 0.673 0.472 -1.569 1.771 sum 1.721 -3.034 13.200 13.653 Atomic orbital electron populations 1.21471 0.97856 0.98852 0.98329 1.18916 0.92474 0.91106 0.87033 1.01023 1.21547 1.36122 1.08271 0.91753 0.92193 1.25725 0.95092 0.95471 1.02101 1.70087 1.45854 1.15394 1.24552 0.85556 0.78793 0.78546 0.78646 1.20014 1.21095 1.19133 1.60623 1.32207 1.33103 1.05158 1.21892 0.99201 0.93535 0.90838 1.22498 0.99690 0.96320 0.94018 0.90126 1.22879 0.99401 0.99125 0.95461 1.23138 0.88919 0.93484 0.93795 0.91543 1.21779 1.02808 0.95782 0.99334 1.89073 1.47739 1.59284 1.34511 1.23001 0.97549 0.93477 0.84340 0.91622 1.21780 0.93257 1.01955 1.02868 0.94438 0.94390 0.95648 0.92834 0.85042 0.92370 0.96764 0.90740 0.90535 0.91595 0.89807 0.92020 0.90781 0.91206 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.22 9.27 71.98 0.67 -4.55 16 2 C 0.21 10.82 2.47 44.17 0.11 10.93 16 3 H -0.03 -1.59 7.74 -2.39 -0.02 -1.61 16 4 C -0.54 -29.47 8.48 25.60 0.22 -29.25 16 5 H 0.06 3.21 7.69 -2.91 -0.02 3.19 16 6 C 0.02 0.86 5.17 84.66 0.44 1.30 16 7 N -0.92 -53.45 12.16 21.45 0.26 -53.18 16 8 Si 0.96 43.31 29.55 68.60 2.03 45.34 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.68 -28.20 6.14 -495.44 -3.04 -31.24 16 13 C 0.08 2.62 4.58 86.30 0.40 3.02 16 14 C -0.11 -3.01 2.83 -9.78 -0.03 -3.04 16 15 H 0.08 2.27 7.87 -2.39 -0.02 2.25 16 16 C -0.13 -3.50 6.14 31.61 0.19 -3.30 16 17 C 0.06 1.54 3.92 31.10 0.12 1.66 16 18 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 19 C -0.14 -2.68 9.53 71.98 0.69 -1.99 16 20 O -0.39 -10.53 11.04 -148.98 -1.64 -12.17 16 21 C 0.07 1.93 3.47 31.10 0.11 2.04 16 22 H 0.07 1.72 7.87 -2.38 -0.02 1.70 16 23 C -0.14 -3.14 9.52 71.98 0.69 -2.45 16 24 H 0.04 2.00 6.83 -2.39 -0.02 1.98 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.02 1.10 7.55 -2.39 -0.02 1.08 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.33 13.58 8.26 -89.69 -0.74 12.84 16 29 H 0.06 2.09 7.51 -2.39 -0.02 2.07 16 30 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 31 H 0.07 2.20 7.73 -2.39 -0.02 2.18 16 32 H 0.08 1.94 7.86 -2.39 -0.02 1.93 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -59.54 303.98 1.46 -58.08 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.27 Total: 18.80 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.59 Total: -25.63 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.78 Total: -84.42 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.64 Total: -12.17 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -59.54 1.46 -58.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686515876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.369 kcal (2) G-P(sol) polarization free energy of solvation -59.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds