Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00172 * 2 1 4 4 H 1.08998 * 109.53519 * 30.09521 * 3 2 1 5 5 C 1.53117 * 109.50235 * 270.00036 * 3 2 1 6 6 C 1.53126 * 109.16077 * 297.70928 * 5 3 2 7 7 C 1.53032 * 109.28059 * 302.35110 * 6 5 3 8 8 H 1.09001 * 109.45663 * 299.16456 * 7 6 5 9 9 C 1.52996 * 109.46579 * 179.19399 * 7 6 5 10 10 N 1.46852 * 109.52611 * 59.17016 * 7 6 5 11 11 C 1.46901 * 110.99924 * 174.16103 * 10 7 6 12 12 C 1.52996 * 109.47015 * 192.11628 * 11 10 7 13 13 C 1.50701 * 109.47132 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99791 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00651 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99643 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 90.00073 * 17 15 13 19 19 H 1.48504 * 109.46921 * 209.99970 * 17 15 13 20 20 H 1.48497 * 109.47110 * 329.99948 * 17 15 13 21 21 C 1.46840 * 111.19841 * 298.26576 * 10 7 6 22 22 H 1.09006 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47383 * 300.00322 * 1 2 3 24 24 H 1.08999 * 109.47022 * 60.00572 * 1 2 3 25 25 H 1.08996 * 109.52406 * 177.81008 * 5 3 2 26 26 H 1.09005 * 109.52736 * 57.61212 * 5 3 2 27 27 H 1.09005 * 109.49869 * 62.28859 * 6 5 3 28 28 H 1.08993 * 109.50498 * 182.40220 * 6 5 3 29 29 H 1.09002 * 109.47276 * 52.05829 * 9 7 6 30 30 H 1.08995 * 109.47287 * 172.06199 * 9 7 6 31 31 H 1.08995 * 109.46912 * 292.06252 * 9 7 6 32 32 H 1.09001 * 109.47434 * 312.12261 * 11 10 7 33 33 H 1.09000 * 109.46710 * 72.12358 * 11 10 7 34 34 H 1.09001 * 109.47537 * 300.00570 * 12 11 10 35 35 H 1.09007 * 109.46538 * 60.00484 * 12 11 10 36 36 H 0.96997 * 120.00048 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.46382 * 301.72092 * 21 10 7 38 38 H 1.09008 * 109.45306 * 181.75261 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3466 1.9999 0.5151 5 6 2.2182 1.7724 -1.4433 6 6 3.1984 0.8257 -2.1416 7 6 4.5152 0.7971 -1.3625 8 1 4.9461 1.7981 -1.3410 9 6 5.4909 -0.1632 -2.0455 10 7 4.2630 0.3435 0.0112 11 6 5.5220 0.1713 0.7482 12 6 5.2504 -0.5796 2.0533 13 6 6.5419 -0.7558 2.8097 14 1 7.4642 -0.3711 2.4002 15 6 6.5460 -1.4090 4.0238 16 7 5.4231 -1.8789 4.5217 17 14 8.1471 -1.6281 4.9610 18 1 8.3539 -0.4684 5.8653 19 1 8.0843 -2.8763 5.7632 20 1 9.2756 -1.7136 3.9997 21 6 3.3616 1.2631 0.7169 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 2.6254 2.7835 -1.4440 26 1 1.2641 1.7625 -1.9705 27 1 2.7736 -0.1777 -2.1753 28 1 3.3835 1.1773 -3.1565 29 1 5.5703 0.0903 -3.1026 30 1 6.4715 -0.0789 -1.5771 31 1 5.1262 -1.1852 -1.9434 32 1 6.2240 -0.3993 0.1400 33 1 5.9478 1.1491 0.9735 34 1 4.5484 -0.0091 2.6615 35 1 4.8246 -1.5574 1.8279 36 1 5.4261 -2.3381 5.3761 37 1 3.7979 2.2618 0.7287 38 1 3.2188 0.9171 1.7408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687208439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = -54.309950 kcal Electronic energy + Delta-G solvation = -16683.137945 eV Core-core repulsion = 14139.213682 eV Total energy + Delta-G solvation = -2543.924263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.35773 -36.81046 -33.76423 -32.24777 -31.63481 -29.07230 -26.99371 -25.82428 -24.85186 -23.09316 -21.11308 -20.04437 -19.21383 -16.48319 -16.03005 -15.68939 -15.14368 -14.68406 -14.41299 -14.06290 -13.63552 -13.31604 -12.88098 -12.72997 -12.39152 -12.00635 -11.71442 -11.63442 -11.27725 -11.07694 -10.99200 -10.91206 -10.66416 -10.52120 -10.38643 -9.98965 -9.56830 -9.38513 -9.08349 -9.01236 -8.25230 -7.50842 -5.92220 -3.94465 3.35822 3.41930 3.45388 4.03453 4.44697 4.61665 4.94335 5.00087 5.16699 5.38086 5.40542 5.43164 5.48615 5.56423 5.71007 5.74111 5.82631 5.86616 5.91618 6.02129 6.06768 6.20613 6.24958 6.35144 6.48544 6.52302 6.61923 6.71284 7.11389 7.48256 7.67266 7.75908 7.92401 8.03503 8.20945 8.52570 9.13495 9.68572 11.18985 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.006792 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.765553 B = 4121.358410 C = 4708.148951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.093 3.907 4 H 0.057 0.943 5 C -0.142 4.142 6 C -0.104 4.104 7 C 0.080 3.920 8 H 0.028 0.972 9 C -0.145 4.145 10 N -0.521 5.521 11 C 0.058 3.942 12 C 0.030 3.970 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.059 3.941 22 H 0.082 0.918 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.025 0.975 36 H 0.259 0.741 37 H 0.036 0.964 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 7.074 -11.873 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.273 6.273 3 C 0.035 3.965 4 H 0.075 0.925 5 C -0.180 4.180 6 C -0.141 4.141 7 C -0.029 4.029 8 H 0.045 0.955 9 C -0.202 4.202 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.007 4.007 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.070 4.070 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.619 6.348 -11.755 15.379 hybrid contribution 0.988 0.950 0.675 1.528 sum -6.631 7.299 -11.080 14.832 Atomic orbital electron populations 1.22756 0.82761 1.02337 0.99022 1.88160 1.17776 1.26687 1.94721 1.22188 0.94716 0.84882 0.94741 0.92495 1.22076 0.99734 0.99180 0.96985 1.21499 0.94863 1.00709 0.97076 1.21569 0.94896 0.96081 0.90320 0.95455 1.21880 0.98997 1.00553 0.98815 1.61965 1.15181 1.46790 1.00657 1.22426 0.88701 0.98463 0.97217 1.19064 0.96421 0.95846 0.89364 1.21221 0.94206 1.36315 1.04228 0.92922 1.24989 0.96068 0.95687 0.97565 1.69983 1.25759 1.38346 1.19065 0.86629 0.84111 0.77485 0.79955 1.20793 1.21239 1.19931 1.22177 0.91071 0.94370 0.99345 0.89971 0.94534 0.94962 0.91782 0.92200 0.90461 0.92521 0.93074 0.92356 0.91504 0.91434 0.96695 0.96716 0.95617 0.93095 0.94603 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.36 -5.92 9.68 -35.23 -0.34 -6.27 16 3 C 0.09 1.39 2.94 -26.65 -0.08 1.31 16 4 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.14 -1.81 5.70 -26.61 -0.15 -1.96 16 6 C -0.10 -1.43 5.21 -26.65 -0.14 -1.57 16 7 C 0.08 1.27 2.44 -67.72 -0.17 1.11 16 8 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 9 C -0.15 -2.16 8.53 37.16 0.32 -1.84 16 10 N -0.52 -10.06 4.36 -226.70 -0.99 -11.04 16 11 C 0.06 1.29 4.65 -3.83 -0.02 1.27 16 12 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 13 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.06 1.05 4.99 -3.84 -0.02 1.03 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.03 0.34 7.83 -51.93 -0.41 -0.07 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 27 H 0.08 1.18 7.80 -51.93 -0.40 0.78 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.46 5.73 -51.93 -0.30 1.16 16 33 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 34 H 0.01 0.42 6.50 -51.93 -0.34 0.08 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.88 6.30 -51.92 -0.33 1.55 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -31.40 296.69 -7.54 -38.94 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.69 Total: -4.06 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 0.29 Total: -12.35 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.25 Total: -37.75 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.34 Total: -6.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.40 -7.54 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.365 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds