Wall clock time and date at job start Mon Mar 30 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00172 * 2 1 4 4 H 1.08998 * 109.53519 * 30.09521 * 3 2 1 5 5 C 1.53117 * 109.50235 * 270.00036 * 3 2 1 6 6 C 1.53126 * 109.16077 * 297.70928 * 5 3 2 7 7 C 1.53032 * 109.28059 * 302.35110 * 6 5 3 8 8 H 1.09001 * 109.45663 * 299.16456 * 7 6 5 9 9 C 1.52996 * 109.46579 * 179.19399 * 7 6 5 10 10 N 1.46852 * 109.52611 * 59.17016 * 7 6 5 11 11 C 1.46901 * 110.99924 * 174.16103 * 10 7 6 12 12 C 1.52996 * 109.47015 * 192.11628 * 11 10 7 13 13 C 1.50701 * 109.47132 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99791 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00651 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99643 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 90.00073 * 17 15 13 19 19 H 1.48504 * 109.46921 * 209.99970 * 17 15 13 20 20 H 1.48497 * 109.47110 * 329.99948 * 17 15 13 21 21 C 1.46840 * 111.19841 * 298.26576 * 10 7 6 22 22 H 1.09006 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47383 * 300.00322 * 1 2 3 24 24 H 1.08999 * 109.47022 * 60.00572 * 1 2 3 25 25 H 1.08996 * 109.52406 * 177.81008 * 5 3 2 26 26 H 1.09005 * 109.52736 * 57.61212 * 5 3 2 27 27 H 1.09005 * 109.49869 * 62.28859 * 6 5 3 28 28 H 1.08993 * 109.50498 * 182.40220 * 6 5 3 29 29 H 1.09002 * 109.47276 * 52.05829 * 9 7 6 30 30 H 1.08995 * 109.47287 * 172.06199 * 9 7 6 31 31 H 1.08995 * 109.46912 * 292.06252 * 9 7 6 32 32 H 1.09001 * 109.47434 * 312.12261 * 11 10 7 33 33 H 1.09000 * 109.46710 * 72.12358 * 11 10 7 34 34 H 1.09001 * 109.47537 * 300.00570 * 12 11 10 35 35 H 1.09007 * 109.46538 * 60.00484 * 12 11 10 36 36 H 0.96997 * 120.00048 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.46382 * 301.72092 * 21 10 7 38 38 H 1.09008 * 109.45306 * 181.75261 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3466 1.9999 0.5151 5 6 2.2182 1.7724 -1.4433 6 6 3.1984 0.8257 -2.1416 7 6 4.5152 0.7971 -1.3625 8 1 4.9461 1.7981 -1.3410 9 6 5.4909 -0.1632 -2.0455 10 7 4.2630 0.3435 0.0112 11 6 5.5220 0.1713 0.7482 12 6 5.2504 -0.5796 2.0533 13 6 6.5419 -0.7558 2.8097 14 1 7.4642 -0.3711 2.4002 15 6 6.5460 -1.4090 4.0238 16 7 5.4231 -1.8789 4.5217 17 14 8.1471 -1.6281 4.9610 18 1 8.3539 -0.4684 5.8653 19 1 8.0843 -2.8763 5.7632 20 1 9.2756 -1.7136 3.9997 21 6 3.3616 1.2631 0.7169 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 2.6254 2.7835 -1.4440 26 1 1.2641 1.7625 -1.9705 27 1 2.7736 -0.1777 -2.1753 28 1 3.3835 1.1773 -3.1565 29 1 5.5703 0.0903 -3.1026 30 1 6.4715 -0.0789 -1.5771 31 1 5.1262 -1.1852 -1.9434 32 1 6.2240 -0.3993 0.1400 33 1 5.9478 1.1491 0.9735 34 1 4.5484 -0.0091 2.6615 35 1 4.8246 -1.5574 1.8279 36 1 5.4261 -2.3381 5.3761 37 1 3.7979 2.2618 0.7287 38 1 3.2188 0.9171 1.7408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687208439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:30 Heat of formation + Delta-G solvation = -75.500050 kcal Electronic energy + Delta-G solvation = -16684.056817 eV Core-core repulsion = 14139.213682 eV Total energy + Delta-G solvation = -2544.843135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63725 -38.10354 -35.63164 -34.01222 -32.86583 -30.95315 -28.19389 -26.97839 -26.61728 -24.72837 -22.46461 -21.74393 -20.48974 -18.56737 -17.23352 -17.13551 -16.55066 -16.31332 -15.88243 -15.42886 -15.02588 -14.79833 -14.30189 -14.07569 -13.89978 -13.74066 -13.11955 -12.92899 -12.78403 -12.76838 -12.46398 -12.44726 -12.13837 -11.95237 -11.80115 -11.51557 -11.31864 -11.19296 -10.92052 -10.52704 -10.30953 -9.01399 -8.18460 -6.30625 1.39449 1.41824 1.52977 2.40713 2.89974 3.14086 3.17816 3.82677 3.86513 4.05834 4.16673 4.29859 4.44717 4.47185 4.53640 4.58274 4.62040 4.66770 4.70327 4.85085 4.90406 4.94094 4.95707 5.03419 5.10765 5.12999 5.26080 5.34954 5.47784 5.53556 5.69516 5.82728 6.14140 6.35173 6.43190 6.57769 6.87273 7.38436 8.93727 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.006792 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.765553 B = 4121.358410 C = 4708.148951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.093 3.907 4 H 0.077 0.923 5 C -0.135 4.135 6 C -0.099 4.099 7 C 0.075 3.925 8 H 0.037 0.963 9 C -0.142 4.142 10 N -0.538 5.538 11 C 0.076 3.924 12 C 0.042 3.958 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.056 3.944 22 H 0.085 0.915 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.015 0.985 34 H -0.011 1.011 35 H -0.015 1.015 36 H 0.263 0.737 37 H 0.048 0.952 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 8.360 -13.322 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.173 4.173 6 C -0.136 4.136 7 C -0.033 4.033 8 H 0.055 0.945 9 C -0.200 4.200 10 N -0.263 5.263 11 C -0.052 4.052 12 C 0.004 3.996 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.072 4.072 22 H 0.103 0.897 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.033 0.967 34 H 0.007 0.993 35 H 0.004 0.996 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.226 7.648 -13.226 16.900 hybrid contribution 0.791 0.534 1.124 1.474 sum -6.436 8.182 -12.102 15.963 Atomic orbital electron populations 1.22924 0.80678 1.03141 1.00484 1.88102 1.20223 1.27937 1.95044 1.22233 0.93017 0.84857 0.96379 0.90532 1.22056 1.00704 0.99503 0.95038 1.21478 0.93555 1.00233 0.98365 1.21755 0.96731 0.96506 0.88266 0.94532 1.21866 0.98009 0.99379 1.00706 1.61881 1.13731 1.48421 1.02273 1.22043 0.90356 0.97595 0.95161 1.18857 0.95124 0.93951 0.91629 1.21643 0.95003 1.36688 1.04985 0.92167 1.26004 1.00155 0.95010 0.98619 1.70136 1.28463 1.38976 1.19644 0.85408 0.79193 0.77729 0.78453 1.19651 1.20693 1.18622 1.22183 0.93053 0.94255 0.97752 0.89659 0.93898 0.92526 0.90055 0.89945 0.92346 0.89420 0.89781 0.93378 0.93274 0.91150 0.96655 0.99317 0.99613 0.92814 0.93418 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.82 113.37 1.23 1.79 16 2 O -0.39 -13.06 9.68 -148.98 -1.44 -14.50 16 3 C 0.09 2.68 2.94 30.64 0.09 2.77 16 4 H 0.08 1.86 7.79 -2.39 -0.02 1.84 16 5 C -0.14 -3.02 5.70 30.68 0.17 -2.85 16 6 C -0.10 -2.45 5.21 30.65 0.16 -2.29 16 7 C 0.08 2.28 2.44 44.93 0.11 2.39 16 8 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 9 C -0.14 -4.04 8.53 71.98 0.61 -3.43 16 10 N -0.54 -21.08 4.36 -871.14 -3.80 -24.88 16 11 C 0.08 3.44 4.65 86.30 0.40 3.84 16 12 C 0.04 2.38 4.95 29.85 0.15 2.53 16 13 C -0.54 -32.44 9.11 25.60 0.23 -32.20 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 16 N -0.93 -59.05 13.29 21.45 0.28 -58.77 16 17 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 21 C 0.06 2.03 4.99 86.33 0.43 2.46 16 22 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 24 H 0.06 1.03 7.83 -2.39 -0.02 1.02 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.51 7.84 -2.38 -0.02 1.50 16 27 H 0.06 1.69 7.80 -2.38 -0.02 1.67 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.05 1.44 6.55 -2.39 -0.02 1.42 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 3.12 5.73 -2.39 -0.01 3.10 16 33 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 34 H -0.01 -0.70 6.50 -2.39 -0.02 -0.72 16 35 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 2.26 6.30 -2.38 -0.02 2.24 16 Total: -1.00 -70.13 296.69 2.12 -68.01 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.00 Total: 7.16 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 4.05 Total: -24.54 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -3.51 Total: -83.65 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.44 Total: -14.50 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.13 2.12 -68.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.487 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds