Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99743 * 2 1 4 4 H 1.08999 * 109.50412 * 29.92573 * 3 2 1 5 5 C 1.53122 * 109.50052 * 269.80357 * 3 2 1 6 6 C 1.53120 * 109.15410 * 182.40633 * 5 3 2 7 7 C 1.53035 * 109.28035 * 57.65880 * 6 5 3 8 8 H 1.09003 * 109.46702 * 60.83223 * 7 6 5 9 9 C 1.53002 * 109.46160 * 180.80177 * 7 6 5 10 10 N 1.46850 * 109.51963 * 300.81696 * 7 6 5 11 11 C 1.46901 * 110.99842 * 185.84449 * 10 7 6 12 12 H 1.08996 * 109.47722 * 56.08786 * 11 10 7 13 13 C 1.53001 * 109.46801 * 296.09010 * 11 10 7 14 14 C 1.50699 * 109.47166 * 176.09175 * 11 10 7 15 15 H 1.08002 * 120.00014 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00034 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00003 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00128 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47175 * 60.00049 * 18 16 14 20 20 H 1.48498 * 109.47436 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47263 * 300.00394 * 18 16 14 22 22 C 1.46838 * 111.19965 * 61.74089 * 10 7 6 23 23 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47334 * 299.99691 * 1 2 3 25 25 H 1.08995 * 109.47544 * 60.00258 * 1 2 3 26 26 H 1.08993 * 109.52218 * 302.30714 * 5 3 2 27 27 H 1.09000 * 109.52272 * 62.50416 * 5 3 2 28 28 H 1.09008 * 109.49844 * 177.59190 * 6 5 3 29 29 H 1.08998 * 109.50664 * 297.67203 * 6 5 3 30 30 H 1.09004 * 109.47078 * 186.76532 * 9 7 6 31 31 H 1.08996 * 109.46946 * 306.76021 * 9 7 6 32 32 H 1.08999 * 109.47079 * 66.76505 * 9 7 6 33 33 H 1.09004 * 109.47186 * 174.93118 * 13 11 10 34 34 H 1.09003 * 109.47424 * 54.93330 * 13 11 10 35 35 H 1.08998 * 109.47392 * 294.92998 * 13 11 10 36 36 H 0.97005 * 120.00011 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46358 * 58.27984 * 22 10 7 38 38 H 1.08999 * 109.46179 * 178.24124 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0001 0.5126 5 6 2.2226 1.7704 -1.4434 6 6 2.9003 3.1435 -1.4343 7 6 4.2236 3.0488 -0.6716 8 1 4.8797 2.3348 -1.1695 9 6 4.8949 4.4234 -0.6428 10 7 3.9666 2.6009 0.7031 11 6 5.1969 2.6312 1.5053 12 1 5.6232 3.6340 1.4791 13 6 6.2047 1.6334 0.9311 14 6 4.8770 2.2584 2.9300 15 1 3.8612 2.0230 3.2115 16 6 5.8810 2.2179 3.8741 17 7 7.1180 2.5041 3.5312 18 14 5.4845 1.7552 5.6399 19 1 4.9037 0.3889 5.6751 20 1 6.7284 1.7847 6.4506 21 1 4.5064 2.7233 6.1977 22 6 3.3593 1.2641 0.7212 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 2.8564 1.0549 -1.9670 27 1 1.2593 1.8430 -1.9482 28 1 3.0930 3.4609 -2.4592 29 1 2.2487 3.8677 -0.9454 30 1 5.8897 4.3329 -0.2065 31 1 4.9776 4.8087 -1.6590 32 1 4.2957 5.1079 -0.0423 33 1 7.1486 1.7198 1.4695 34 1 6.3679 1.8487 -0.1249 35 1 5.8159 0.6210 1.0396 36 1 7.8243 2.4760 4.1955 37 1 4.0193 0.5584 0.2168 38 1 3.2097 0.9471 1.7533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687212765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -48.917718 kcal Electronic energy + Delta-G solvation = -17103.188602 eV Core-core repulsion = 14559.498163 eV Total energy + Delta-G solvation = -2543.690438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.19360 -37.06547 -33.96787 -31.77620 -31.31210 -28.25023 -27.00079 -25.23970 -25.18265 -23.50070 -21.25125 -20.31218 -18.43509 -16.37804 -16.13498 -15.55352 -14.89411 -14.59388 -14.26354 -13.68638 -13.59116 -13.24869 -12.92475 -12.21388 -12.04433 -11.91554 -11.46372 -11.36178 -11.24124 -10.96061 -10.90941 -10.73265 -10.45019 -10.34671 -10.16378 -10.11224 -9.94697 -9.62209 -9.04692 -8.77284 -8.33540 -7.10446 -5.97938 -4.00822 3.35272 3.39124 3.42398 3.96787 4.44902 5.04626 5.16835 5.26766 5.33044 5.36937 5.41621 5.51762 5.65517 5.74534 5.84674 5.95451 6.04696 6.12801 6.15885 6.22513 6.38033 6.47928 6.57971 6.68075 6.75608 6.80944 6.92203 6.94564 7.19062 7.48863 7.59962 7.76670 7.87216 8.17885 8.41746 8.65521 9.04429 9.63755 11.09472 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.009412 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.270653 B = 2974.089686 C = 3787.799746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.089 3.911 4 H 0.064 0.936 5 C -0.138 4.138 6 C -0.107 4.107 7 C 0.075 3.925 8 H 0.034 0.966 9 C -0.142 4.142 10 N -0.524 5.524 11 C 0.211 3.789 12 H 0.049 0.951 13 C -0.171 4.171 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.069 3.931 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.008 0.992 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -0.486 -8.516 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.031 3.969 4 H 0.082 0.918 5 C -0.176 4.176 6 C -0.145 4.145 7 C -0.034 4.034 8 H 0.052 0.948 9 C -0.199 4.199 10 N -0.250 5.250 11 C 0.105 3.895 12 H 0.067 0.933 13 C -0.230 4.230 14 C -0.540 4.540 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.059 4.059 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.734 -0.310 -8.218 11.996 hybrid contribution 0.238 -0.676 0.557 0.908 sum -8.496 -0.986 -7.661 11.482 Atomic orbital electron populations 1.22706 0.81945 1.02017 0.99617 1.87876 1.18920 1.28775 1.95042 1.22273 0.96278 0.83340 0.94997 0.91754 1.22049 1.00246 0.97732 0.97537 1.21580 0.97224 0.96381 0.99312 1.21559 0.94510 0.96404 0.90913 0.94784 1.21835 1.01364 0.96471 1.00239 1.62222 1.30179 1.23497 1.09104 1.19342 0.83261 0.95796 0.91062 0.93315 1.22394 1.04432 0.99617 0.96555 1.21106 0.94338 1.45871 0.92729 0.92055 1.24908 0.95012 0.95480 0.98781 1.69887 0.99968 1.49517 1.34022 0.86608 0.77470 0.79020 0.84587 1.20362 1.21431 1.20276 1.21845 0.91809 0.91181 1.01074 0.90212 0.94169 0.94618 0.91840 0.92701 0.92188 0.91448 0.91936 0.93602 0.92062 0.89713 0.97271 0.95119 0.93007 0.95074 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.39 -6.55 10.35 -35.23 -0.36 -6.91 16 3 C 0.09 1.53 2.77 -26.65 -0.07 1.46 16 4 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16 5 C -0.14 -2.09 5.62 -26.61 -0.15 -2.24 16 6 C -0.11 -1.62 5.37 -26.65 -0.14 -1.77 16 7 C 0.08 1.37 1.98 -67.72 -0.13 1.24 16 8 H 0.03 0.66 6.59 -51.93 -0.34 0.32 16 9 C -0.14 -2.43 8.53 37.16 0.32 -2.12 16 10 N -0.52 -11.23 4.48 -220.15 -0.99 -12.22 16 11 C 0.21 5.26 1.94 -68.86 -0.13 5.13 16 12 H 0.05 1.31 6.13 -51.93 -0.32 0.99 16 13 C -0.17 -4.18 8.17 37.16 0.30 -3.88 16 14 C -0.50 -13.71 7.85 -34.44 -0.27 -13.98 16 15 H 0.06 1.68 6.68 -52.49 -0.35 1.33 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.47 11.37 55.43 0.63 -24.84 16 18 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.07 1.43 4.34 -3.84 -0.02 1.42 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.04 0.39 7.95 -51.93 -0.41 -0.02 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.18 6.65 -51.93 -0.35 0.84 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 2.27 6.22 -51.93 -0.32 1.95 16 34 H 0.01 0.19 6.38 -51.93 -0.33 -0.14 16 35 H 0.03 0.75 6.83 -51.93 -0.35 0.39 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.03 0.68 6.75 -51.93 -0.35 0.32 16 38 H 0.09 2.04 6.27 -51.93 -0.33 1.72 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -28.33 287.22 -7.08 -35.41 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.36 Total: -0.57 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 0.70 Total: -11.68 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.36 Total: -37.06 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.36 Total: -6.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.33 -7.08 -35.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687212765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.507 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds