Wall clock time and date at job start Mon Mar 30 2020 02:51:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42901 * 113.99743 * 2 1
4 4 H 1.08999 * 109.50412 * 29.92573 * 3 2 1
5 5 C 1.53122 * 109.50052 * 269.80357 * 3 2 1
6 6 C 1.53120 * 109.15410 * 182.40633 * 5 3 2
7 7 C 1.53035 * 109.28035 * 57.65880 * 6 5 3
8 8 H 1.09003 * 109.46702 * 60.83223 * 7 6 5
9 9 C 1.53002 * 109.46160 * 180.80177 * 7 6 5
10 10 N 1.46850 * 109.51963 * 300.81696 * 7 6 5
11 11 C 1.46901 * 110.99842 * 185.84449 * 10 7 6
12 12 H 1.08996 * 109.47722 * 56.08786 * 11 10 7
13 13 C 1.53001 * 109.46801 * 296.09010 * 11 10 7
14 14 C 1.50699 * 109.47166 * 176.09175 * 11 10 7
15 15 H 1.08002 * 120.00014 * 359.97438 * 14 11 10
16 16 C 1.37877 * 120.00034 * 179.97438 * 14 11 10
17 17 N 1.31516 * 120.00003 * 359.97438 * 16 14 11
18 18 Si 1.86797 * 120.00128 * 180.02562 * 16 14 11
19 19 H 1.48499 * 109.47175 * 60.00049 * 18 16 14
20 20 H 1.48498 * 109.47436 * 179.97438 * 18 16 14
21 21 H 1.48499 * 109.47263 * 300.00394 * 18 16 14
22 22 C 1.46838 * 111.19965 * 61.74089 * 10 7 6
23 23 H 1.09005 * 109.47177 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.47334 * 299.99691 * 1 2 3
25 25 H 1.08995 * 109.47544 * 60.00258 * 1 2 3
26 26 H 1.08993 * 109.52218 * 302.30714 * 5 3 2
27 27 H 1.09000 * 109.52272 * 62.50416 * 5 3 2
28 28 H 1.09008 * 109.49844 * 177.59190 * 6 5 3
29 29 H 1.08998 * 109.50664 * 297.67203 * 6 5 3
30 30 H 1.09004 * 109.47078 * 186.76532 * 9 7 6
31 31 H 1.08996 * 109.46946 * 306.76021 * 9 7 6
32 32 H 1.08999 * 109.47079 * 66.76505 * 9 7 6
33 33 H 1.09004 * 109.47186 * 174.93118 * 13 11 10
34 34 H 1.09003 * 109.47424 * 54.93330 * 13 11 10
35 35 H 1.08998 * 109.47392 * 294.92998 * 13 11 10
36 36 H 0.97005 * 120.00011 * 179.97438 * 17 16 14
37 37 H 1.09003 * 109.46358 * 58.27984 * 22 10 7
38 38 H 1.08999 * 109.46179 * 178.24124 * 22 10 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3447 2.0001 0.5126
5 6 2.2226 1.7704 -1.4434
6 6 2.9003 3.1435 -1.4343
7 6 4.2236 3.0488 -0.6716
8 1 4.8797 2.3348 -1.1695
9 6 4.8949 4.4234 -0.6428
10 7 3.9666 2.6009 0.7031
11 6 5.1969 2.6312 1.5053
12 1 5.6232 3.6340 1.4791
13 6 6.2047 1.6334 0.9311
14 6 4.8770 2.2584 2.9300
15 1 3.8612 2.0230 3.2115
16 6 5.8810 2.2179 3.8741
17 7 7.1180 2.5041 3.5312
18 14 5.4845 1.7552 5.6399
19 1 4.9037 0.3889 5.6751
20 1 6.7284 1.7847 6.4506
21 1 4.5064 2.7233 6.1977
22 6 3.3593 1.2641 0.7212
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8901
25 1 -0.3634 0.5138 -0.8899
26 1 2.8564 1.0549 -1.9670
27 1 1.2593 1.8430 -1.9482
28 1 3.0930 3.4609 -2.4592
29 1 2.2487 3.8677 -0.9454
30 1 5.8897 4.3329 -0.2065
31 1 4.9776 4.8087 -1.6590
32 1 4.2957 5.1079 -0.0423
33 1 7.1486 1.7198 1.4695
34 1 6.3679 1.8487 -0.1249
35 1 5.8159 0.6210 1.0396
36 1 7.8243 2.4760 4.1955
37 1 4.0193 0.5584 0.2168
38 1 3.2097 0.9471 1.7533
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000687212765.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:18
Heat of formation + Delta-G solvation = -48.917718 kcal
Electronic energy + Delta-G solvation = -17103.188602 eV
Core-core repulsion = 14559.498163 eV
Total energy + Delta-G solvation = -2543.690438 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.19360 -37.06547 -33.96787 -31.77620 -31.31210 -28.25023 -27.00079 -25.23970
-25.18265 -23.50070 -21.25125 -20.31218 -18.43509 -16.37804 -16.13498 -15.55352
-14.89411 -14.59388 -14.26354 -13.68638 -13.59116 -13.24869 -12.92475 -12.21388
-12.04433 -11.91554 -11.46372 -11.36178 -11.24124 -10.96061 -10.90941 -10.73265
-10.45019 -10.34671 -10.16378 -10.11224 -9.94697 -9.62209 -9.04692 -8.77284
-8.33540 -7.10446 -5.97938 -4.00822 3.35272 3.39124 3.42398 3.96787
4.44902 5.04626 5.16835 5.26766 5.33044 5.36937 5.41621 5.51762
5.65517 5.74534 5.84674 5.95451 6.04696 6.12801 6.15885 6.22513
6.38033 6.47928 6.57971 6.68075 6.75608 6.80944 6.92203 6.94564
7.19062 7.48863 7.59962 7.76670 7.87216 8.17885 8.41746 8.65521
9.04429 9.63755 11.09472
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.024966 B = 0.009412 C = 0.007390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1121.270653 B = 2974.089686 C = 3787.799746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.388 6.388
3 C 0.089 3.911
4 H 0.064 0.936
5 C -0.138 4.138
6 C -0.107 4.107
7 C 0.075 3.925
8 H 0.034 0.966
9 C -0.142 4.142
10 N -0.524 5.524
11 C 0.211 3.789
12 H 0.049 0.951
13 C -0.171 4.171
14 C -0.502 4.502
15 H 0.061 0.939
16 C 0.059 3.941
17 N -0.895 5.895
18 Si 0.895 3.105
19 H -0.278 1.278
20 H -0.289 1.289
21 H -0.277 1.277
22 C 0.069 3.931
23 H 0.079 0.921
24 H 0.040 0.960
25 H 0.035 0.965
26 H 0.063 0.937
27 H 0.054 0.946
28 H 0.059 0.941
29 H 0.067 0.933
30 H 0.062 0.938
31 H 0.045 0.955
32 H 0.060 0.940
33 H 0.084 0.916
34 H 0.008 0.992
35 H 0.030 0.970
36 H 0.260 0.740
37 H 0.031 0.969
38 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.697 -0.486 -8.516 12.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.306 6.306
3 C 0.031 3.969
4 H 0.082 0.918
5 C -0.176 4.176
6 C -0.145 4.145
7 C -0.034 4.034
8 H 0.052 0.948
9 C -0.199 4.199
10 N -0.250 5.250
11 C 0.105 3.895
12 H 0.067 0.933
13 C -0.230 4.230
14 C -0.540 4.540
15 H 0.079 0.921
16 C -0.142 4.142
17 N -0.534 5.534
18 Si 0.723 3.277
19 H -0.204 1.204
20 H -0.214 1.214
21 H -0.203 1.203
22 C -0.059 4.059
23 H 0.098 0.902
24 H 0.058 0.942
25 H 0.054 0.946
26 H 0.082 0.918
27 H 0.073 0.927
28 H 0.078 0.922
29 H 0.086 0.914
30 H 0.081 0.919
31 H 0.064 0.936
32 H 0.079 0.921
33 H 0.103 0.897
34 H 0.027 0.973
35 H 0.049 0.951
36 H 0.070 0.930
37 H 0.049 0.951
38 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -8.734 -0.310 -8.218 11.996
hybrid contribution 0.238 -0.676 0.557 0.908
sum -8.496 -0.986 -7.661 11.482
Atomic orbital electron populations
1.22706 0.81945 1.02017 0.99617 1.87876 1.18920 1.28775 1.95042
1.22273 0.96278 0.83340 0.94997 0.91754 1.22049 1.00246 0.97732
0.97537 1.21580 0.97224 0.96381 0.99312 1.21559 0.94510 0.96404
0.90913 0.94784 1.21835 1.01364 0.96471 1.00239 1.62222 1.30179
1.23497 1.09104 1.19342 0.83261 0.95796 0.91062 0.93315 1.22394
1.04432 0.99617 0.96555 1.21106 0.94338 1.45871 0.92729 0.92055
1.24908 0.95012 0.95480 0.98781 1.69887 0.99968 1.49517 1.34022
0.86608 0.77470 0.79020 0.84587 1.20362 1.21431 1.20276 1.21845
0.91809 0.91181 1.01074 0.90212 0.94169 0.94618 0.91840 0.92701
0.92188 0.91448 0.91936 0.93602 0.92062 0.89713 0.97271 0.95119
0.93007 0.95074 0.89247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.43 10.82 101.05 1.09 1.52 16
2 O -0.39 -6.55 10.35 -35.23 -0.36 -6.91 16
3 C 0.09 1.53 2.77 -26.65 -0.07 1.46 16
4 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16
5 C -0.14 -2.09 5.62 -26.61 -0.15 -2.24 16
6 C -0.11 -1.62 5.37 -26.65 -0.14 -1.77 16
7 C 0.08 1.37 1.98 -67.72 -0.13 1.24 16
8 H 0.03 0.66 6.59 -51.93 -0.34 0.32 16
9 C -0.14 -2.43 8.53 37.16 0.32 -2.12 16
10 N -0.52 -11.23 4.48 -220.15 -0.99 -12.22 16
11 C 0.21 5.26 1.94 -68.86 -0.13 5.13 16
12 H 0.05 1.31 6.13 -51.93 -0.32 0.99 16
13 C -0.17 -4.18 8.17 37.16 0.30 -3.88 16
14 C -0.50 -13.71 7.85 -34.44 -0.27 -13.98 16
15 H 0.06 1.68 6.68 -52.49 -0.35 1.33 16
16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16
17 N -0.89 -25.47 11.37 55.43 0.63 -24.84 16
18 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16
19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
22 C 0.07 1.43 4.34 -3.84 -0.02 1.42 16
23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
24 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16
25 H 0.04 0.39 7.95 -51.93 -0.41 -0.02 16
26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
27 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16
28 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16
29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
30 H 0.06 1.18 6.65 -51.93 -0.35 0.84 16
31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
33 H 0.08 2.27 6.22 -51.93 -0.32 1.95 16
34 H 0.01 0.19 6.38 -51.93 -0.33 -0.14 16
35 H 0.03 0.75 6.83 -51.93 -0.35 0.39 16
36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
37 H 0.03 0.68 6.75 -51.93 -0.35 0.32 16
38 H 0.09 2.04 6.27 -51.93 -0.33 1.72 16
LS Contribution 287.22 15.07 4.33 4.33
Total: -1.00 -28.33 287.22 -7.08 -35.41
By element:
Atomic # 1 Polarization: 5.80 SS G_CDS: -6.36 Total: -0.57 kcal
Atomic # 6 Polarization: -12.38 SS G_CDS: 0.70 Total: -11.68 kcal
Atomic # 7 Polarization: -36.71 SS G_CDS: -0.36 Total: -37.06 kcal
Atomic # 8 Polarization: -6.55 SS G_CDS: -0.36 Total: -6.91 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -28.33 -7.08 -35.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687212765.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.507 kcal
(2) G-P(sol) polarization free energy of solvation -28.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.918 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds