Wall clock time and date at job start Mon Mar 30 2020 02:58:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.50395 * 2 1
4 4 C 1.53126 * 109.50547 * 239.92156 * 2 1 3
5 5 C 1.53123 * 109.16180 * 182.44118 * 4 2 1
6 6 C 1.53042 * 109.30699 * 57.59683 * 5 4 2
7 7 N 1.46850 * 109.52155 * 300.83813 * 6 5 4
8 8 C 1.46896 * 110.99776 * 185.84182 * 7 6 5
9 9 C 1.52995 * 109.47369 * 45.79386 * 8 7 6
10 10 C 1.50697 * 109.47344 * 180.02562 * 9 8 7
11 11 H 1.08003 * 119.99864 * 359.97438 * 10 9 8
12 12 C 1.37876 * 119.99997 * 180.02562 * 10 9 8
13 13 N 1.31513 * 120.00140 * 359.97438 * 12 10 9
14 14 Si 1.86808 * 119.99994 * 179.97438 * 12 10 9
15 15 H 1.48499 * 109.47195 * 59.99754 * 14 12 10
16 16 H 1.48504 * 109.46997 * 179.97438 * 14 12 10
17 17 H 1.48497 * 109.47050 * 299.99889 * 14 12 10
18 18 C 1.46854 * 111.19671 * 61.74568 * 7 6 5
19 19 H 1.09000 * 109.46274 * 58.27433 * 18 7 6
20 20 C 1.53001 * 109.45934 * 178.24077 * 18 7 6
21 21 O 1.42902 * 109.47017 * 295.04860 * 20 18 7
22 22 H 1.09002 * 109.47153 * 299.99924 * 1 2 3
23 23 H 1.09001 * 109.46832 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.47261 * 60.00096 * 1 2 3
25 25 H 1.09003 * 109.52072 * 302.31194 * 4 2 1
26 26 H 1.08998 * 109.52152 * 62.49605 * 4 2 1
27 27 H 1.08995 * 109.47051 * 297.65618 * 5 4 2
28 28 H 1.08993 * 109.53423 * 177.57399 * 5 4 2
29 29 H 1.09002 * 109.46013 * 180.82863 * 6 5 4
30 30 H 1.08990 * 109.45394 * 60.84779 * 6 5 4
31 31 H 1.09005 * 109.47273 * 165.79240 * 8 7 6
32 32 H 1.09000 * 109.47089 * 285.78980 * 8 7 6
33 33 H 1.09004 * 109.47263 * 299.99872 * 9 8 7
34 34 H 1.09000 * 109.47346 * 59.99751 * 9 8 7
35 35 H 0.97007 * 119.99934 * 180.02562 * 13 12 10
36 36 H 1.08993 * 109.47465 * 55.05553 * 20 18 7
37 37 H 1.08998 * 109.46646 * 175.05796 * 20 18 7
38 38 H 0.96699 * 113.99905 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2490
5 6 3.5712 -0.7723 -1.2106
6 6 4.0230 -1.4730 0.0729
7 7 3.5093 -0.7416 1.2381
8 6 4.0373 -1.3049 2.4878
9 6 5.5425 -1.5396 2.3456
10 6 6.0840 -2.1180 3.6274
11 1 5.4210 -2.2997 4.4604
12 6 7.4261 -2.4144 3.7372
13 7 8.2335 -2.1927 2.7230
14 14 8.0975 -3.1308 5.3264
15 1 7.4207 -4.4212 5.6125
16 1 9.5585 -3.3586 5.1882
17 1 7.8472 -2.1826 6.4414
18 6 2.0409 -0.7230 1.2483
19 1 1.6648 -1.7460 1.2550
20 6 1.5491 0.0091 2.4985
21 8 1.9270 -0.7291 3.6623
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 -0.8900
25 1 1.6452 -1.7387 -1.2696
26 1 1.7157 -0.1864 -2.1399
27 1 3.9678 0.2427 -1.2300
28 1 3.9401 -1.3238 -2.0753
29 1 5.1121 -1.4961 0.1099
30 1 3.6373 -2.4923 0.0850
31 1 3.8539 -0.6087 3.3062
32 1 3.5402 -2.2519 2.6981
33 1 5.7260 -2.2358 1.5272
34 1 6.0396 -0.5926 2.1353
35 1 9.1777 -2.4015 2.8002
36 1 1.9960 1.0024 2.5373
37 1 0.4635 0.1001 2.4627
38 1 1.6469 -0.3229 4.4939
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687715770.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:19
Heat of formation + Delta-G solvation = -86.291516 kcal
Electronic energy + Delta-G solvation = -16773.027554 eV
Core-core repulsion = 14227.716466 eV
Total energy + Delta-G solvation = -2545.311088 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.69900 -37.34291 -36.32131 -34.63299 -33.17705 -31.29851 -28.21139 -27.09929
-26.10782 -23.95566 -22.32958 -21.21627 -20.63871 -18.58610 -18.20907 -16.88729
-16.45247 -16.38837 -15.78565 -15.27411 -15.10244 -14.57628 -14.35102 -14.04805
-13.89355 -13.48967 -13.23758 -13.17897 -12.83818 -12.69040 -12.40540 -12.32530
-11.98839 -11.88889 -11.59370 -11.48578 -11.27266 -11.07539 -10.96808 -10.60049
-10.37433 -9.13598 -8.19983 -6.31138 1.38220 1.42463 1.50445 2.40284
3.05063 3.12506 3.38752 3.78671 3.96598 4.08724 4.21748 4.33824
4.39018 4.46663 4.52059 4.65360 4.68534 4.75751 4.83431 4.87388
4.96373 5.00894 5.04186 5.14380 5.18809 5.24788 5.33899 5.39551
5.48789 5.55368 5.70916 5.83521 6.12806 6.39842 6.41467 6.84942
6.98337 7.37397 8.92102
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037458 B = 0.006872 C = 0.005949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 747.317598 B = 4073.388253 C = 4705.425378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.078 4.078
3 H 0.079 0.921
4 C -0.109 4.109
5 C -0.111 4.111
6 C 0.049 3.951
7 N -0.539 5.539
8 C 0.096 3.904
9 C 0.028 3.972
10 C -0.543 4.543
11 H 0.056 0.944
12 C 0.001 3.999
13 N -0.933 5.933
14 Si 0.968 3.032
15 H -0.269 1.269
16 H -0.280 1.280
17 H -0.265 1.265
18 C 0.084 3.916
19 H 0.021 0.979
20 C 0.080 3.920
21 O -0.587 6.587
22 H 0.066 0.934
23 H 0.052 0.948
24 H 0.075 0.925
25 H 0.056 0.944
26 H 0.090 0.910
27 H 0.067 0.933
28 H 0.076 0.924
29 H 0.055 0.945
30 H 0.011 0.989
31 H 0.081 0.919
32 H 0.000 1.000
33 H -0.007 1.007
34 H -0.010 1.010
35 H 0.264 0.736
36 H 0.051 0.949
37 H 0.080 0.920
38 H 0.388 0.612
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.427 5.464 -5.241 18.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.097 4.097
3 H 0.097 0.903
4 C -0.146 4.146
5 C -0.149 4.149
6 C -0.079 4.079
7 N -0.264 5.264
8 C -0.031 4.031
9 C -0.009 4.009
10 C -0.581 4.581
11 H 0.074 0.926
12 C -0.197 4.197
13 N -0.573 5.573
14 Si 0.792 3.208
15 H -0.194 1.194
16 H -0.205 1.205
17 H -0.190 1.190
18 C -0.025 4.025
19 H 0.039 0.961
20 C 0.003 3.997
21 O -0.395 6.395
22 H 0.085 0.915
23 H 0.071 0.929
24 H 0.094 0.906
25 H 0.075 0.925
26 H 0.108 0.892
27 H 0.085 0.915
28 H 0.095 0.905
29 H 0.074 0.926
30 H 0.029 0.971
31 H 0.099 0.901
32 H 0.018 0.982
33 H 0.011 0.989
34 H 0.008 0.992
35 H 0.073 0.927
36 H 0.070 0.930
37 H 0.098 0.902
38 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -15.845 5.541 -5.777 17.752
hybrid contribution 0.463 -1.081 1.228 1.700
sum -15.382 4.460 -4.549 16.649
Atomic orbital electron populations
1.21870 0.92823 1.02190 1.03111 1.21133 0.96615 0.99693 0.92287
0.90273 1.21628 0.94237 1.00602 0.98153 1.21587 0.96989 1.01024
0.95273 1.22154 0.99700 0.94352 0.91696 1.62142 1.07674 1.54067
1.02542 1.21976 0.93905 0.96146 0.91073 1.19140 0.91891 0.94473
0.95431 1.21573 0.94066 1.42224 1.00275 0.92602 1.25983 0.97297
0.96010 1.00390 1.70106 1.04785 1.49451 1.32942 0.85464 0.77086
0.79071 0.79180 1.19375 1.20504 1.18966 1.21853 0.87260 0.97633
0.95722 0.96095 1.22347 0.98840 0.94239 0.84320 1.86751 1.81855
1.53504 1.17436 0.91489 0.92912 0.90572 0.92530 0.89166 0.91455
0.90540 0.92630 0.97052 0.90104 0.98171 0.98926 0.99175 0.92734
0.93047 0.90228 0.76214
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.37 8.87 71.98 0.64 -1.73 16
2 C -0.08 -1.83 2.40 -10.74 -0.03 -1.85 16
3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
4 C -0.11 -2.49 5.29 30.68 0.16 -2.33 16
5 C -0.11 -3.20 6.09 30.65 0.19 -3.01 16
6 C 0.05 1.92 4.85 86.33 0.42 2.34 16
7 N -0.54 -21.57 4.64 -871.11 -4.04 -25.62 16
8 C 0.10 4.61 3.71 86.30 0.32 4.93 16
9 C 0.03 1.61 4.22 29.85 0.13 1.74 16
10 C -0.54 -33.08 9.11 25.60 0.23 -32.85 16
11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16
12 C 0.00 0.05 5.46 84.65 0.46 0.51 16
13 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16
14 Si 0.97 46.05 29.54 68.60 2.03 48.08 16
15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16
16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
17 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16
18 C 0.08 2.62 1.77 44.94 0.08 2.70 16
19 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
20 C 0.08 2.15 6.14 71.98 0.44 2.59 16
21 O -0.59 -18.19 9.97 -148.98 -1.49 -19.68 16
22 H 0.07 0.98 6.35 -2.39 -0.02 0.97 16
23 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16
24 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16
25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
29 H 0.06 2.56 5.81 -2.39 -0.01 2.55 16
30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
31 H 0.08 3.86 6.00 -2.38 -0.01 3.85 16
32 H 0.00 0.00 7.82 -2.39 -0.02 -0.02 16
33 H -0.01 -0.46 6.21 -2.38 -0.01 -0.47 16
34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16
35 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16
36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.08 1.58 6.20 -2.39 -0.01 1.57 16
38 H 0.39 8.07 9.12 -74.06 -0.68 7.40 16
Total: -1.00 -71.92 289.80 0.17 -71.75
By element:
Atomic # 1 Polarization: 10.82 SS G_CDS: 0.35 Total: 11.17 kcal
Atomic # 6 Polarization: -30.00 SS G_CDS: 3.04 Total: -26.96 kcal
Atomic # 7 Polarization: -80.60 SS G_CDS: -3.76 Total: -84.36 kcal
Atomic # 8 Polarization: -18.19 SS G_CDS: -1.49 Total: -19.68 kcal
Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal
Total: -71.92 0.17 -71.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687715770.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.543 kcal
(2) G-P(sol) polarization free energy of solvation -71.921 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds