Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50395 * 2 1 4 4 C 1.53126 * 109.50547 * 239.92156 * 2 1 3 5 5 C 1.53123 * 109.16180 * 182.44118 * 4 2 1 6 6 C 1.53042 * 109.30699 * 57.59683 * 5 4 2 7 7 N 1.46850 * 109.52155 * 300.83813 * 6 5 4 8 8 C 1.46896 * 110.99776 * 185.84182 * 7 6 5 9 9 C 1.52995 * 109.47369 * 45.79386 * 8 7 6 10 10 C 1.50697 * 109.47344 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99864 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99997 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00140 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47195 * 59.99754 * 14 12 10 16 16 H 1.48504 * 109.46997 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47050 * 299.99889 * 14 12 10 18 18 C 1.46854 * 111.19671 * 61.74568 * 7 6 5 19 19 H 1.09000 * 109.46274 * 58.27433 * 18 7 6 20 20 C 1.53001 * 109.45934 * 178.24077 * 18 7 6 21 21 O 1.42902 * 109.47017 * 295.04860 * 20 18 7 22 22 H 1.09002 * 109.47153 * 299.99924 * 1 2 3 23 23 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47261 * 60.00096 * 1 2 3 25 25 H 1.09003 * 109.52072 * 302.31194 * 4 2 1 26 26 H 1.08998 * 109.52152 * 62.49605 * 4 2 1 27 27 H 1.08995 * 109.47051 * 297.65618 * 5 4 2 28 28 H 1.08993 * 109.53423 * 177.57399 * 5 4 2 29 29 H 1.09002 * 109.46013 * 180.82863 * 6 5 4 30 30 H 1.08990 * 109.45394 * 60.84779 * 6 5 4 31 31 H 1.09005 * 109.47273 * 165.79240 * 8 7 6 32 32 H 1.09000 * 109.47089 * 285.78980 * 8 7 6 33 33 H 1.09004 * 109.47263 * 299.99872 * 9 8 7 34 34 H 1.09000 * 109.47346 * 59.99751 * 9 8 7 35 35 H 0.97007 * 119.99934 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47465 * 55.05553 * 20 18 7 37 37 H 1.08998 * 109.46646 * 175.05796 * 20 18 7 38 38 H 0.96699 * 113.99905 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2490 5 6 3.5712 -0.7723 -1.2106 6 6 4.0230 -1.4730 0.0729 7 7 3.5093 -0.7416 1.2381 8 6 4.0373 -1.3049 2.4878 9 6 5.5425 -1.5396 2.3456 10 6 6.0840 -2.1180 3.6274 11 1 5.4210 -2.2997 4.4604 12 6 7.4261 -2.4144 3.7372 13 7 8.2335 -2.1927 2.7230 14 14 8.0975 -3.1308 5.3264 15 1 7.4207 -4.4212 5.6125 16 1 9.5585 -3.3586 5.1882 17 1 7.8472 -2.1826 6.4414 18 6 2.0409 -0.7230 1.2483 19 1 1.6648 -1.7460 1.2550 20 6 1.5491 0.0091 2.4985 21 8 1.9270 -0.7291 3.6623 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.6452 -1.7387 -1.2696 26 1 1.7157 -0.1864 -2.1399 27 1 3.9678 0.2427 -1.2300 28 1 3.9401 -1.3238 -2.0753 29 1 5.1121 -1.4961 0.1099 30 1 3.6373 -2.4923 0.0850 31 1 3.8539 -0.6087 3.3062 32 1 3.5402 -2.2519 2.6981 33 1 5.7260 -2.2358 1.5272 34 1 6.0396 -0.5926 2.1353 35 1 9.1777 -2.4015 2.8002 36 1 1.9960 1.0024 2.5373 37 1 0.4635 0.1001 2.4627 38 1 1.6469 -0.3229 4.4939 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = -86.291516 kcal Electronic energy + Delta-G solvation = -16773.027554 eV Core-core repulsion = 14227.716466 eV Total energy + Delta-G solvation = -2545.311088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69900 -37.34291 -36.32131 -34.63299 -33.17705 -31.29851 -28.21139 -27.09929 -26.10782 -23.95566 -22.32958 -21.21627 -20.63871 -18.58610 -18.20907 -16.88729 -16.45247 -16.38837 -15.78565 -15.27411 -15.10244 -14.57628 -14.35102 -14.04805 -13.89355 -13.48967 -13.23758 -13.17897 -12.83818 -12.69040 -12.40540 -12.32530 -11.98839 -11.88889 -11.59370 -11.48578 -11.27266 -11.07539 -10.96808 -10.60049 -10.37433 -9.13598 -8.19983 -6.31138 1.38220 1.42463 1.50445 2.40284 3.05063 3.12506 3.38752 3.78671 3.96598 4.08724 4.21748 4.33824 4.39018 4.46663 4.52059 4.65360 4.68534 4.75751 4.83431 4.87388 4.96373 5.00894 5.04186 5.14380 5.18809 5.24788 5.33899 5.39551 5.48789 5.55368 5.70916 5.83521 6.12806 6.39842 6.41467 6.84942 6.98337 7.37397 8.92102 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037458 B = 0.006872 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.317598 B = 4073.388253 C = 4705.425378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.049 3.951 7 N -0.539 5.539 8 C 0.096 3.904 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.084 3.916 19 H 0.021 0.979 20 C 0.080 3.920 21 O -0.587 6.587 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.011 0.989 31 H 0.081 0.919 32 H 0.000 1.000 33 H -0.007 1.007 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.427 5.464 -5.241 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.079 4.079 7 N -0.264 5.264 8 C -0.031 4.031 9 C -0.009 4.009 10 C -0.581 4.581 11 H 0.074 0.926 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.792 3.208 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.025 4.025 19 H 0.039 0.961 20 C 0.003 3.997 21 O -0.395 6.395 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.011 0.989 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.845 5.541 -5.777 17.752 hybrid contribution 0.463 -1.081 1.228 1.700 sum -15.382 4.460 -4.549 16.649 Atomic orbital electron populations 1.21870 0.92823 1.02190 1.03111 1.21133 0.96615 0.99693 0.92287 0.90273 1.21628 0.94237 1.00602 0.98153 1.21587 0.96989 1.01024 0.95273 1.22154 0.99700 0.94352 0.91696 1.62142 1.07674 1.54067 1.02542 1.21976 0.93905 0.96146 0.91073 1.19140 0.91891 0.94473 0.95431 1.21573 0.94066 1.42224 1.00275 0.92602 1.25983 0.97297 0.96010 1.00390 1.70106 1.04785 1.49451 1.32942 0.85464 0.77086 0.79071 0.79180 1.19375 1.20504 1.18966 1.21853 0.87260 0.97633 0.95722 0.96095 1.22347 0.98840 0.94239 0.84320 1.86751 1.81855 1.53504 1.17436 0.91489 0.92912 0.90572 0.92530 0.89166 0.91455 0.90540 0.92630 0.97052 0.90104 0.98171 0.98926 0.99175 0.92734 0.93047 0.90228 0.76214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.87 71.98 0.64 -1.73 16 2 C -0.08 -1.83 2.40 -10.74 -0.03 -1.85 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -2.49 5.29 30.68 0.16 -2.33 16 5 C -0.11 -3.20 6.09 30.65 0.19 -3.01 16 6 C 0.05 1.92 4.85 86.33 0.42 2.34 16 7 N -0.54 -21.57 4.64 -871.11 -4.04 -25.62 16 8 C 0.10 4.61 3.71 86.30 0.32 4.93 16 9 C 0.03 1.61 4.22 29.85 0.13 1.74 16 10 C -0.54 -33.08 9.11 25.60 0.23 -32.85 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16 14 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.08 2.62 1.77 44.94 0.08 2.70 16 19 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 20 C 0.08 2.15 6.14 71.98 0.44 2.59 16 21 O -0.59 -18.19 9.97 -148.98 -1.49 -19.68 16 22 H 0.07 0.98 6.35 -2.39 -0.02 0.97 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 24 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.56 5.81 -2.39 -0.01 2.55 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 3.86 6.00 -2.38 -0.01 3.85 16 32 H 0.00 0.00 7.82 -2.39 -0.02 -0.02 16 33 H -0.01 -0.46 6.21 -2.38 -0.01 -0.47 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.58 6.20 -2.39 -0.01 1.57 16 38 H 0.39 8.07 9.12 -74.06 -0.68 7.40 16 Total: -1.00 -71.92 289.80 0.17 -71.75 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.35 Total: 11.17 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.04 Total: -26.96 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.76 Total: -84.36 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.49 Total: -19.68 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.92 0.17 -71.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.543 kcal (2) G-P(sol) polarization free energy of solvation -71.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds