Wall clock time and date at job start Mon Mar 30 2020 03:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47092 * 90.00048 * 8 6 4 10 10 H 1.48498 * 109.47340 * 210.00299 * 8 6 4 11 11 H 1.48501 * 109.47391 * 330.00372 * 8 6 4 12 12 N 1.46906 * 109.46907 * 240.00230 * 2 1 3 13 13 C 1.46853 * 110.99832 * 184.21088 * 12 2 1 14 14 C 1.53033 * 109.52262 * 174.16246 * 13 12 2 15 15 H 1.09002 * 109.50417 * 179.12117 * 14 13 12 16 16 C 1.53009 * 109.53320 * 299.21510 * 14 13 12 17 17 C 1.53112 * 109.27992 * 59.17361 * 14 13 12 18 18 O 1.42906 * 109.57731 * 182.41014 * 17 14 13 19 19 C 1.53120 * 109.16707 * 302.34582 * 17 14 13 20 20 H 1.08996 * 109.49890 * 297.71825 * 19 17 14 21 21 C 1.53001 * 109.53910 * 177.61333 * 19 17 14 22 22 C 1.46844 * 110.99887 * 59.99965 * 12 2 1 23 23 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46125 * 294.17808 * 13 12 2 28 28 H 1.09003 * 109.46462 * 54.14202 * 13 12 2 29 29 H 1.09002 * 109.46475 * 179.82228 * 16 14 13 30 30 H 1.08998 * 109.47263 * 299.82444 * 16 14 13 31 31 H 1.08997 * 109.46706 * 59.82690 * 16 14 13 32 32 H 1.09005 * 109.52421 * 62.25399 * 17 14 13 33 33 H 0.96707 * 113.99410 * 299.71978 * 18 17 14 34 34 H 1.09000 * 109.46888 * 300.17577 * 21 19 17 35 35 H 1.08999 * 109.47098 * 60.17597 * 21 19 17 36 36 H 1.08994 * 109.46928 * 180.17971 * 21 19 17 37 37 H 1.09000 * 109.46299 * 305.85220 * 22 12 2 38 38 H 1.08998 * 109.46010 * 65.83553 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4859 -2.5664 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3695 15 1 5.0350 -1.7165 -2.3668 16 6 3.3491 -3.0539 -2.2566 17 6 3.4779 -0.9979 -3.6730 18 8 3.8583 -1.8158 -4.7815 19 6 1.9538 -0.8537 -3.6429 20 1 1.4961 -1.8410 -3.5822 21 6 1.4813 -0.1489 -4.9161 22 6 1.5487 -0.0265 -2.4206 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4844 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2690 -0.2538 29 1 3.6769 -3.6574 -3.1030 30 1 3.6833 -3.5176 -1.3285 31 1 2.2612 -2.9866 -2.2580 32 1 3.9351 -0.0134 -3.7730 33 1 4.8126 -1.9499 -4.8620 34 1 1.9405 0.8378 -4.9769 35 1 1.7701 -0.7383 -5.7862 36 1 0.3967 -0.0439 -4.8920 37 1 0.4631 0.0659 -2.3883 38 1 1.9959 0.9651 -2.4889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688082679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:58 Heat of formation + Delta-G solvation = -59.038467 kcal Electronic energy + Delta-G solvation = -17150.520517 eV Core-core repulsion = 14606.391211 eV Total energy + Delta-G solvation = -2544.129307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39670 -36.26774 -33.78480 -32.79543 -31.78349 -28.49496 -26.61998 -25.86036 -24.74013 -23.05248 -21.08258 -19.66867 -18.43263 -16.90822 -16.22763 -15.47000 -14.77715 -14.47509 -14.10876 -13.83083 -13.42561 -12.94176 -12.50910 -12.40313 -11.97923 -11.73736 -11.50353 -11.35705 -11.28349 -10.99482 -10.90533 -10.62655 -10.44020 -10.38745 -10.08334 -10.01911 -9.84953 -9.57218 -9.37559 -8.78511 -8.41887 -7.12947 -6.01255 -4.05709 3.29615 3.36609 3.40541 4.39924 4.44423 4.88633 5.07192 5.13361 5.30253 5.41690 5.51378 5.68974 5.78119 5.92137 6.00600 6.03552 6.09660 6.21796 6.35268 6.41601 6.45121 6.48961 6.60621 6.67345 6.77860 6.88306 6.96166 7.07529 7.17744 7.53914 7.75316 7.82190 7.83401 8.22676 8.33807 8.61917 9.01033 9.59362 11.05555 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038030 B = 0.008055 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.085051 B = 3475.330330 C = 3983.994425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.070 3.930 14 C -0.121 4.121 15 H 0.061 0.939 16 C -0.128 4.128 17 C 0.114 3.886 18 O -0.566 6.566 19 C -0.080 4.080 20 H 0.084 0.916 21 C -0.141 4.141 22 C 0.058 3.942 23 H 0.084 0.916 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.017 0.983 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.369 0.631 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -2.674 -10.850 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.254 5.254 13 C -0.059 4.059 14 C -0.140 4.140 15 H 0.080 0.920 16 C -0.186 4.186 17 C 0.056 3.944 18 O -0.371 6.371 19 C -0.099 4.099 20 H 0.103 0.897 21 C -0.199 4.199 22 C -0.071 4.071 23 H 0.103 0.897 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.215 0.785 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.329 -3.037 -10.769 11.674 hybrid contribution 1.300 0.541 1.057 1.761 sum 4.629 -2.495 -9.712 11.045 Atomic orbital electron populations 1.21841 0.97692 0.99659 0.99860 1.19215 0.92336 0.91893 0.85850 0.98569 1.21154 1.30956 1.12230 0.89763 0.91854 1.24933 0.95215 0.95096 0.99009 1.69894 1.36892 1.23098 1.23377 0.86543 0.78428 0.80105 0.82611 1.20850 1.21266 1.19844 1.62019 1.08540 1.52661 1.02227 1.21934 0.89319 0.96828 0.97779 1.21907 0.98849 0.97585 0.95673 0.92016 1.21599 1.02644 0.94398 0.99926 1.21922 0.95768 0.91840 0.84894 1.86493 1.27706 1.73043 1.49830 1.21183 0.93177 1.00886 0.94671 0.89738 1.21731 1.00597 0.99919 0.97612 1.22118 1.00801 0.94225 0.89920 0.89698 0.97303 0.94652 0.93011 0.96519 0.89240 0.93832 0.93342 0.91043 0.93742 0.78466 0.93411 0.92254 0.92874 0.90320 0.96280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.75 37.16 0.33 -2.91 16 2 C 0.21 5.34 2.07 -68.86 -0.14 5.20 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.60 7.86 -34.44 -0.27 -13.87 16 5 H 0.06 1.71 6.40 -52.48 -0.34 1.37 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.53 -11.24 3.80 -228.07 -0.87 -12.10 16 13 C 0.07 1.36 4.65 -3.83 -0.02 1.35 16 14 C -0.12 -1.91 2.94 -90.54 -0.27 -2.17 16 15 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.13 -2.05 8.59 37.16 0.32 -1.74 16 17 C 0.11 1.70 2.63 -26.61 -0.07 1.63 16 18 O -0.57 -7.58 12.01 -35.23 -0.42 -8.00 16 19 C -0.08 -1.28 2.26 -90.53 -0.20 -1.48 16 20 H 0.08 1.44 6.58 -51.93 -0.34 1.10 16 21 C -0.14 -1.93 9.07 37.16 0.34 -1.59 16 22 C 0.06 1.07 4.50 -3.83 -0.02 1.06 16 23 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.01 0.18 6.28 -51.93 -0.33 -0.15 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 1.90 6.02 -51.93 -0.31 1.59 16 29 H 0.04 0.62 7.63 -51.93 -0.40 0.23 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.27 6.01 -51.93 -0.31 0.96 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.37 3.46 9.09 45.56 0.41 3.87 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.47 6.01 -51.93 -0.31 1.16 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -28.51 286.03 -7.06 -35.57 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.58 Total: 1.79 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.10 Total: -13.01 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.24 Total: -36.88 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.42 Total: -8.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.51 -7.06 -35.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688082679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.468 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds