Wall clock time and date at job start Mon Mar 30 2020 03:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47092 * 90.00048 * 8 6 4 10 10 H 1.48498 * 109.47340 * 210.00299 * 8 6 4 11 11 H 1.48501 * 109.47391 * 330.00372 * 8 6 4 12 12 N 1.46906 * 109.46907 * 240.00230 * 2 1 3 13 13 C 1.46853 * 110.99832 * 184.21088 * 12 2 1 14 14 C 1.53033 * 109.52262 * 174.16246 * 13 12 2 15 15 H 1.09002 * 109.50417 * 179.12117 * 14 13 12 16 16 C 1.53009 * 109.53320 * 299.21510 * 14 13 12 17 17 C 1.53112 * 109.27992 * 59.17361 * 14 13 12 18 18 O 1.42906 * 109.57731 * 182.41014 * 17 14 13 19 19 C 1.53120 * 109.16707 * 302.34582 * 17 14 13 20 20 H 1.08996 * 109.49890 * 297.71825 * 19 17 14 21 21 C 1.53001 * 109.53910 * 177.61333 * 19 17 14 22 22 C 1.46844 * 110.99887 * 59.99965 * 12 2 1 23 23 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46125 * 294.17808 * 13 12 2 28 28 H 1.09003 * 109.46462 * 54.14202 * 13 12 2 29 29 H 1.09002 * 109.46475 * 179.82228 * 16 14 13 30 30 H 1.08998 * 109.47263 * 299.82444 * 16 14 13 31 31 H 1.08997 * 109.46706 * 59.82690 * 16 14 13 32 32 H 1.09005 * 109.52421 * 62.25399 * 17 14 13 33 33 H 0.96707 * 113.99410 * 299.71978 * 18 17 14 34 34 H 1.09000 * 109.46888 * 300.17577 * 21 19 17 35 35 H 1.08999 * 109.47098 * 60.17597 * 21 19 17 36 36 H 1.08994 * 109.46928 * 180.17971 * 21 19 17 37 37 H 1.09000 * 109.46299 * 305.85220 * 22 12 2 38 38 H 1.08998 * 109.46010 * 65.83553 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4859 -2.5664 3.7119 12 7 2.0196 -0.6925 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3695 15 1 5.0350 -1.7165 -2.3668 16 6 3.3491 -3.0539 -2.2566 17 6 3.4779 -0.9979 -3.6730 18 8 3.8583 -1.8158 -4.7815 19 6 1.9538 -0.8537 -3.6429 20 1 1.4961 -1.8410 -3.5822 21 6 1.4813 -0.1489 -4.9161 22 6 1.5487 -0.0265 -2.4206 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4844 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2690 -0.2538 29 1 3.6769 -3.6574 -3.1030 30 1 3.6833 -3.5176 -1.3285 31 1 2.2612 -2.9866 -2.2580 32 1 3.9351 -0.0134 -3.7730 33 1 4.8126 -1.9499 -4.8620 34 1 1.9405 0.8378 -4.9769 35 1 1.7701 -0.7383 -5.7862 36 1 0.3967 -0.0439 -4.8920 37 1 0.4631 0.0659 -2.3883 38 1 1.9959 0.9651 -2.4889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688082679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:57 Heat of formation + Delta-G solvation = -78.596483 kcal Electronic energy + Delta-G solvation = -17151.368616 eV Core-core repulsion = 14606.391211 eV Total energy + Delta-G solvation = -2544.977406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79177 -37.72838 -35.43323 -34.11647 -33.54597 -30.30750 -28.24551 -27.11469 -26.56544 -24.64265 -22.43867 -21.53112 -19.77686 -18.30476 -18.06089 -17.12721 -16.22769 -16.01820 -15.65034 -15.32489 -15.00762 -14.64259 -13.99905 -13.70536 -13.57614 -13.11276 -12.97157 -12.91255 -12.73849 -12.69354 -12.49392 -12.37222 -12.22404 -11.96983 -11.91208 -11.64727 -11.29667 -11.09687 -10.77891 -10.58035 -10.43714 -8.88645 -8.11354 -6.22796 1.40850 1.42465 1.52807 2.41722 3.15921 3.26472 3.42335 3.78043 3.85622 4.15226 4.19644 4.33229 4.52936 4.62956 4.69729 4.72147 4.77281 4.85496 4.90631 4.94591 5.02818 5.08655 5.13503 5.22153 5.24810 5.33136 5.38577 5.40808 5.53313 5.65525 5.73501 5.81399 6.26801 6.42430 6.77016 6.92527 6.96082 7.46337 8.94798 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038030 B = 0.008055 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.085051 B = 3475.330330 C = 3983.994425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.217 3.783 3 H -0.040 1.040 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.533 5.533 13 C 0.070 3.930 14 C -0.114 4.114 15 H 0.088 0.912 16 C -0.122 4.122 17 C 0.124 3.876 18 O -0.568 6.568 19 C -0.077 4.077 20 H 0.074 0.926 21 C -0.134 4.134 22 C 0.059 3.941 23 H 0.059 0.941 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.390 0.610 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -3.599 -12.106 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.110 3.890 3 H -0.023 1.023 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.258 5.258 13 C -0.059 4.059 14 C -0.133 4.133 15 H 0.106 0.894 16 C -0.180 4.180 17 C 0.065 3.935 18 O -0.375 6.375 19 C -0.096 4.096 20 H 0.093 0.907 21 C -0.192 4.192 22 C -0.069 4.069 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.240 0.760 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 4.335 -3.974 -12.051 13.410 hybrid contribution 1.013 0.836 1.401 1.920 sum 5.348 -3.138 -10.650 12.324 Atomic orbital electron populations 1.21657 0.97329 0.99218 0.99684 1.19017 0.92629 0.90023 0.87349 1.02301 1.21413 1.30940 1.12180 0.90864 0.92220 1.25712 0.95410 0.95791 1.01899 1.70023 1.37801 1.24291 1.23999 0.85548 0.77972 0.79094 0.78976 1.20220 1.20932 1.19328 1.61972 1.09755 1.52158 1.01869 1.21933 0.88193 0.96974 0.98753 1.21880 1.00353 0.96597 0.94454 0.89366 1.21526 1.01168 0.94783 1.00487 1.21686 0.94845 0.92235 0.84764 1.86454 1.29879 1.72563 1.48614 1.21108 0.94311 0.99982 0.94210 0.90739 1.21674 1.01089 1.00012 0.96401 1.22163 1.00429 0.94439 0.89906 0.92189 0.95134 0.95013 0.92980 0.97345 0.91522 0.91715 0.94052 0.93216 0.93197 0.76049 0.92812 0.91456 0.92227 0.90822 0.96726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.75 71.98 0.63 -5.38 16 2 C 0.22 11.17 2.07 44.17 0.09 11.26 16 3 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 4 C -0.52 -28.46 7.86 25.60 0.20 -28.26 16 5 H 0.06 3.27 6.40 -2.91 -0.02 3.25 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.53 -22.81 3.80 -875.48 -3.33 -26.14 16 13 C 0.07 2.72 4.65 86.32 0.40 3.12 16 14 C -0.11 -3.36 2.94 -10.74 -0.03 -3.39 16 15 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.12 -3.69 8.59 71.99 0.62 -3.07 16 17 C 0.12 3.35 2.63 30.67 0.08 3.43 16 18 O -0.57 -13.05 12.01 -148.98 -1.79 -14.84 16 19 C -0.08 -2.32 2.26 -10.74 -0.02 -2.34 16 20 H 0.07 2.42 6.58 -2.39 -0.02 2.40 16 21 C -0.13 -3.33 9.07 71.98 0.65 -2.68 16 22 C 0.06 2.15 4.50 86.33 0.39 2.54 16 23 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 24 H 0.03 1.33 6.28 -2.39 -0.01 1.32 16 25 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 2.87 6.02 -2.39 -0.01 2.86 16 29 H 0.06 1.67 7.63 -2.39 -0.02 1.65 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.72 6.01 -2.39 -0.01 1.70 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.39 5.59 9.09 -74.05 -0.67 4.91 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.59 7.76 -2.39 -0.02 1.57 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 2.73 6.01 -2.39 -0.01 2.71 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -61.31 286.03 0.97 -60.35 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.36 Total: 11.67 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.46 Total: -23.75 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.09 Total: -79.32 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.79 Total: -14.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.31 0.97 -60.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688082679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.250 kcal (2) G-P(sol) polarization free energy of solvation -61.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds