Wall clock time and date at job start Mon Mar 30 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46495 * 2 1 4 4 C 1.50701 * 109.47458 * 119.99665 * 2 1 3 5 5 H 1.08001 * 119.99440 * 119.99919 * 4 2 1 6 6 C 1.37879 * 120.00179 * 300.00641 * 4 2 1 7 7 N 1.31513 * 120.00062 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99786 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47549 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47129 * 119.99890 * 8 6 4 11 11 H 1.48511 * 109.47055 * 239.99703 * 8 6 4 12 12 N 1.46894 * 109.47175 * 240.00333 * 2 1 3 13 13 C 1.46846 * 110.99787 * 305.74450 * 12 2 1 14 14 C 1.53036 * 109.52897 * 185.80162 * 13 12 2 15 15 H 1.09001 * 109.50127 * 60.83970 * 14 13 12 16 16 C 1.52997 * 109.50587 * 180.91950 * 14 13 12 17 17 C 1.53119 * 109.30951 * 300.88337 * 14 13 12 18 18 H 1.09001 * 109.52296 * 297.73115 * 17 14 13 19 19 O 1.42901 * 109.52333 * 177.53314 * 17 14 13 20 20 C 1.53124 * 109.15858 * 57.62996 * 17 14 13 21 21 H 1.08996 * 109.50281 * 62.29181 * 20 17 14 22 22 C 1.53000 * 109.49849 * 182.40527 * 20 17 14 23 23 C 1.46847 * 111.00476 * 69.99616 * 12 2 1 24 24 H 1.09005 * 109.47504 * 299.99612 * 1 2 3 25 25 H 1.08991 * 109.47643 * 59.99811 * 1 2 3 26 26 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 27 27 H 0.96991 * 120.00374 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.43013 * 65.80238 * 13 12 2 29 29 H 1.09004 * 109.49460 * 305.84184 * 13 12 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 31 31 H 1.09001 * 109.46832 * 59.92299 * 16 14 13 32 32 H 1.09004 * 109.47261 * 299.92280 * 16 14 13 33 33 H 0.96699 * 114.00001 * 179.97438 * 19 17 14 34 34 H 1.08997 * 109.47423 * 59.99967 * 22 20 17 35 35 H 1.09005 * 109.47249 * 180.02562 * 22 20 17 36 36 H 1.09003 * 109.47361 * 299.99878 * 22 20 17 37 37 H 1.09000 * 109.45803 * 54.14476 * 23 12 2 38 38 H 1.09003 * 109.45351 * 294.17332 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6035 8 14 2.3215 -1.1203 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1661 -1.5867 4.8161 12 7 2.0196 -0.6924 -1.1994 13 6 1.4400 -2.0376 -1.3040 14 6 2.0793 -2.7802 -2.4794 15 1 3.1522 -2.8733 -2.3108 16 6 1.4587 -4.1732 -2.6020 17 6 1.8311 -1.9945 -3.7700 18 1 0.7594 -1.9351 -3.9599 19 8 2.4751 -2.6540 -4.8620 20 6 2.4024 -0.5822 -3.6164 21 1 3.4803 -0.6401 -3.4653 22 6 2.1057 0.2289 -4.8793 23 6 1.7529 0.0970 -2.4086 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7094 1.1618 3.4844 28 1 0.3651 -1.9576 -1.4664 29 1 1.6278 -2.5873 -0.3816 30 1 1.9142 -4.7015 -3.4397 31 1 0.3859 -4.0794 -2.7707 32 1 1.6345 -4.7316 -1.6825 33 1 2.3589 -2.2102 -5.7132 34 1 1.0276 0.2877 -5.0285 35 1 2.5130 1.2341 -4.7696 36 1 2.5656 -0.2571 -5.7397 37 1 2.1680 1.0976 -2.2879 38 1 0.6767 0.1669 -2.5665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688082686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:29 Heat of formation + Delta-G solvation = -63.390304 kcal Electronic energy + Delta-G solvation = -17050.608141 eV Core-core repulsion = 14506.290124 eV Total energy + Delta-G solvation = -2544.318017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36341 -36.42817 -33.69215 -33.20686 -31.82194 -28.39430 -26.17361 -25.99347 -25.16526 -23.09846 -20.57113 -19.98830 -18.93462 -17.22440 -16.12288 -15.09332 -14.73452 -14.64707 -14.24752 -13.79849 -13.24638 -12.81036 -12.56659 -12.42009 -12.32453 -12.07529 -11.74238 -11.36009 -11.23983 -11.05647 -10.97045 -10.79670 -10.49569 -10.44618 -10.23401 -10.09354 -9.81892 -9.64624 -9.38635 -8.86016 -8.37581 -7.12567 -6.00151 -4.03587 3.30815 3.38787 3.43766 4.41490 4.45021 4.82269 4.96846 5.09890 5.27438 5.32954 5.44789 5.63571 5.69007 5.79102 5.88495 5.96051 6.03316 6.08272 6.18490 6.27239 6.29731 6.45742 6.53906 6.59040 6.67220 6.80544 6.83511 6.87199 7.13965 7.48508 7.72051 7.80523 7.86221 8.15637 8.39711 8.61443 9.03084 9.61632 11.07068 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.007790 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.893544 B = 3593.384695 C = 4040.233520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.071 3.929 14 C -0.083 4.083 15 H 0.080 0.920 16 C -0.140 4.140 17 C 0.116 3.884 18 H 0.046 0.954 19 O -0.567 6.567 20 C -0.122 4.122 21 H 0.083 0.917 22 C -0.149 4.149 23 C 0.062 3.938 24 H 0.088 0.912 25 H 0.006 0.994 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.368 0.632 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -3.686 -12.230 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.256 5.256 13 C -0.057 4.057 14 C -0.102 4.102 15 H 0.098 0.902 16 C -0.198 4.198 17 C 0.058 3.942 18 H 0.064 0.936 19 O -0.372 6.372 20 C -0.141 4.141 21 H 0.101 0.899 22 C -0.207 4.207 23 C -0.066 4.066 24 H 0.106 0.894 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.215 0.785 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.515 -4.030 -11.544 12.238 hybrid contribution -0.855 0.238 0.385 0.967 sum -0.340 -3.792 -11.159 11.791 Atomic orbital electron populations 1.22402 1.00876 0.99351 1.00446 1.19293 0.89720 0.94469 0.85987 0.94358 1.21157 1.30344 1.12450 0.89609 0.91869 1.24932 0.95262 0.95151 0.99016 1.69892 1.37225 1.23125 1.23265 0.86477 0.78528 0.79705 0.82927 1.19708 1.21087 1.21206 1.62219 1.59114 1.01922 1.02375 1.21980 0.95307 0.91125 0.97317 1.21229 1.01867 0.94392 0.92736 0.90156 1.21711 1.00081 0.96428 1.01536 1.21939 0.94395 0.91015 0.86880 0.93591 1.86512 1.77933 1.54260 1.18533 1.21880 1.02118 0.95082 0.95007 0.89855 1.21818 1.01238 1.00473 0.97145 1.21981 0.97195 0.97245 0.90219 0.89355 0.97511 0.95081 0.93095 0.95699 0.89453 0.92381 0.93393 0.92672 0.78541 0.92931 0.92180 0.92899 0.91388 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.23 37.16 0.31 -3.84 16 2 C 0.21 5.30 2.31 -68.87 -0.16 5.14 16 3 H 0.04 1.06 7.99 -51.92 -0.41 0.64 16 4 C -0.50 -13.56 7.88 -34.44 -0.27 -13.84 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -11.44 4.59 -228.09 -1.05 -12.49 16 13 C 0.07 1.40 3.83 -3.83 -0.01 1.38 16 14 C -0.08 -1.40 2.61 -90.54 -0.24 -1.63 16 15 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.14 -2.05 9.07 37.16 0.34 -1.71 16 17 C 0.12 1.74 2.42 -26.61 -0.06 1.67 16 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 19 O -0.57 -7.77 12.74 -35.23 -0.45 -8.22 16 20 C -0.12 -1.83 2.61 -90.54 -0.24 -2.07 16 21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 22 C -0.15 -1.72 8.94 37.16 0.33 -1.39 16 23 C 0.06 1.14 4.41 -3.84 -0.02 1.12 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 25 H 0.01 0.13 6.81 -51.93 -0.35 -0.22 16 26 H 0.03 0.72 6.46 -51.92 -0.34 0.39 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.09 1.87 6.70 -51.93 -0.35 1.53 16 30 H 0.06 0.82 7.76 -51.93 -0.40 0.41 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.37 3.57 7.48 45.56 0.34 3.91 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.50 6.84 -51.93 -0.36 0.15 16 37 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 38 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -28.66 287.13 -7.45 -36.11 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.77 Total: 2.43 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -0.12 Total: -13.68 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.42 Total: -37.33 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.45 Total: -8.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.66 -7.45 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688082686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.281 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds