Wall clock time and date at job start Mon Mar 30 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46495 * 2 1 4 4 C 1.50701 * 109.47458 * 119.99665 * 2 1 3 5 5 H 1.08001 * 119.99440 * 119.99919 * 4 2 1 6 6 C 1.37879 * 120.00179 * 300.00641 * 4 2 1 7 7 N 1.31513 * 120.00062 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99786 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47549 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47129 * 119.99890 * 8 6 4 11 11 H 1.48511 * 109.47055 * 239.99703 * 8 6 4 12 12 N 1.46894 * 109.47175 * 240.00333 * 2 1 3 13 13 C 1.46846 * 110.99787 * 305.74450 * 12 2 1 14 14 C 1.53036 * 109.52897 * 185.80162 * 13 12 2 15 15 H 1.09001 * 109.50127 * 60.83970 * 14 13 12 16 16 C 1.52997 * 109.50587 * 180.91950 * 14 13 12 17 17 C 1.53119 * 109.30951 * 300.88337 * 14 13 12 18 18 H 1.09001 * 109.52296 * 297.73115 * 17 14 13 19 19 O 1.42901 * 109.52333 * 177.53314 * 17 14 13 20 20 C 1.53124 * 109.15858 * 57.62996 * 17 14 13 21 21 H 1.08996 * 109.50281 * 62.29181 * 20 17 14 22 22 C 1.53000 * 109.49849 * 182.40527 * 20 17 14 23 23 C 1.46847 * 111.00476 * 69.99616 * 12 2 1 24 24 H 1.09005 * 109.47504 * 299.99612 * 1 2 3 25 25 H 1.08991 * 109.47643 * 59.99811 * 1 2 3 26 26 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 27 27 H 0.96991 * 120.00374 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.43013 * 65.80238 * 13 12 2 29 29 H 1.09004 * 109.49460 * 305.84184 * 13 12 2 30 30 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 31 31 H 1.09001 * 109.46832 * 59.92299 * 16 14 13 32 32 H 1.09004 * 109.47261 * 299.92280 * 16 14 13 33 33 H 0.96699 * 114.00001 * 179.97438 * 19 17 14 34 34 H 1.08997 * 109.47423 * 59.99967 * 22 20 17 35 35 H 1.09005 * 109.47249 * 180.02562 * 22 20 17 36 36 H 1.09003 * 109.47361 * 299.99878 * 22 20 17 37 37 H 1.09000 * 109.45803 * 54.14476 * 23 12 2 38 38 H 1.09003 * 109.45351 * 294.17332 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6035 8 14 2.3215 -1.1203 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1661 -1.5867 4.8161 12 7 2.0196 -0.6924 -1.1994 13 6 1.4400 -2.0376 -1.3040 14 6 2.0793 -2.7802 -2.4794 15 1 3.1522 -2.8733 -2.3108 16 6 1.4587 -4.1732 -2.6020 17 6 1.8311 -1.9945 -3.7700 18 1 0.7594 -1.9351 -3.9599 19 8 2.4751 -2.6540 -4.8620 20 6 2.4024 -0.5822 -3.6164 21 1 3.4803 -0.6401 -3.4653 22 6 2.1057 0.2289 -4.8793 23 6 1.7529 0.0970 -2.4086 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7094 1.1618 3.4844 28 1 0.3651 -1.9576 -1.4664 29 1 1.6278 -2.5873 -0.3816 30 1 1.9142 -4.7015 -3.4397 31 1 0.3859 -4.0794 -2.7707 32 1 1.6345 -4.7316 -1.6825 33 1 2.3589 -2.2102 -5.7132 34 1 1.0276 0.2877 -5.0285 35 1 2.5130 1.2341 -4.7696 36 1 2.5656 -0.2571 -5.7397 37 1 2.1680 1.0976 -2.2879 38 1 0.6767 0.1669 -2.5665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688082686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:28 Heat of formation + Delta-G solvation = -83.533546 kcal Electronic energy + Delta-G solvation = -17051.481617 eV Core-core repulsion = 14506.290124 eV Total energy + Delta-G solvation = -2545.191493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76587 -37.89875 -35.35676 -34.46458 -33.55721 -30.15630 -27.66447 -27.20631 -27.10673 -24.73421 -21.85014 -21.62597 -20.47409 -18.46702 -18.07943 -16.90258 -16.15694 -16.10056 -15.69314 -15.48483 -14.66730 -14.28030 -14.18814 -13.82675 -13.62496 -13.34940 -13.12903 -12.96707 -12.83573 -12.69194 -12.57665 -12.33712 -12.20629 -12.07026 -12.04872 -11.63932 -11.36442 -11.11133 -10.85193 -10.61709 -10.49083 -8.85039 -8.11453 -6.22065 1.40501 1.42610 1.54479 2.42519 3.17168 3.25459 3.39220 3.72989 3.85843 4.07522 4.17072 4.39146 4.48227 4.56394 4.66915 4.69145 4.71758 4.75324 4.81969 4.88687 4.93694 5.02349 5.05063 5.14259 5.22243 5.26020 5.35121 5.38243 5.48630 5.53301 5.70612 5.80435 6.21531 6.49858 6.75646 6.91628 6.92136 7.47326 8.94924 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035894 B = 0.007790 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.893544 B = 3593.384695 C = 4040.233520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.546 5.546 13 C 0.078 3.922 14 C -0.082 4.082 15 H 0.063 0.937 16 C -0.133 4.133 17 C 0.126 3.874 18 H 0.055 0.945 19 O -0.571 6.571 20 C -0.115 4.115 21 H 0.068 0.932 22 C -0.143 4.143 23 C 0.062 3.938 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.389 0.611 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -4.597 -13.758 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.269 5.269 13 C -0.050 4.050 14 C -0.101 4.101 15 H 0.082 0.918 16 C -0.191 4.191 17 C 0.067 3.933 18 H 0.073 0.927 19 O -0.379 6.379 20 C -0.134 4.134 21 H 0.087 0.913 22 C -0.200 4.200 23 C -0.067 4.067 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.471 -4.942 -13.107 14.015 hybrid contribution -0.818 0.542 0.815 1.276 sum -0.347 -4.400 -12.292 13.060 Atomic orbital electron populations 1.22184 1.00231 0.99175 0.99938 1.19046 0.90076 0.92798 0.87248 0.97702 1.21388 1.30412 1.12346 0.90930 0.92776 1.25680 0.95425 0.95829 1.01795 1.70010 1.37985 1.24189 1.23951 0.85503 0.78102 0.78644 0.79364 1.19353 1.20701 1.20546 1.62121 1.59457 1.02858 1.02494 1.21892 0.95362 0.90095 0.97696 1.21148 1.00611 0.95590 0.92733 0.91844 1.21658 1.00506 0.94968 1.01979 1.21705 0.94863 0.90248 0.86525 0.92702 1.86470 1.77758 1.54412 1.19286 1.21814 1.00749 0.95703 0.95115 0.91345 1.21785 1.02134 1.00155 0.95973 1.22064 0.97552 0.96898 0.90159 0.91990 0.95736 0.94917 0.92964 0.95807 0.91968 0.91385 0.92489 0.92689 0.76144 0.92067 0.92046 0.90147 0.92240 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.65 8.23 71.98 0.59 -7.05 16 2 C 0.22 11.11 2.31 44.17 0.10 11.21 16 3 H 0.01 0.29 7.99 -2.38 -0.02 0.27 16 4 C -0.51 -28.63 7.88 25.60 0.20 -28.43 16 5 H 0.05 3.06 7.12 -2.91 -0.02 3.03 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.55 -23.76 4.59 -875.53 -4.02 -27.79 16 13 C 0.08 3.06 3.83 86.33 0.33 3.39 16 14 C -0.08 -2.65 2.61 -10.74 -0.03 -2.68 16 15 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.13 -3.66 9.07 71.98 0.65 -3.00 16 17 C 0.13 3.44 2.42 30.68 0.07 3.52 16 18 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 19 O -0.57 -13.69 12.74 -148.98 -1.90 -15.59 16 20 C -0.11 -3.24 2.61 -10.74 -0.03 -3.27 16 21 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 22 C -0.14 -2.85 8.94 71.98 0.64 -2.21 16 23 C 0.06 2.22 4.41 86.32 0.38 2.60 16 24 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 25 H 0.02 1.06 6.81 -2.39 -0.02 1.05 16 26 H 0.03 1.54 6.46 -2.38 -0.02 1.52 16 27 H 0.26 14.35 8.31 -92.72 -0.77 13.58 16 28 H 0.02 0.93 6.57 -2.39 -0.02 0.92 16 29 H 0.06 2.73 6.70 -2.38 -0.02 2.71 16 30 H 0.07 1.74 7.76 -2.39 -0.02 1.72 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.39 5.85 7.48 -74.06 -0.55 5.30 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.18 6.84 -2.39 -0.02 1.17 16 37 H 0.06 2.21 8.02 -2.39 -0.02 2.19 16 38 H 0.03 0.90 6.87 -2.39 -0.02 0.89 16 Total: -1.00 -61.91 287.13 0.19 -61.72 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.47 Total: 13.33 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.37 Total: -24.86 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.78 Total: -80.89 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.90 Total: -15.59 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.91 0.19 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688082686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.818 kcal (2) G-P(sol) polarization free energy of solvation -61.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds