Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47370 * 2 1 4 4 C 1.50697 * 109.47631 * 120.00554 * 2 1 3 5 5 H 1.07996 * 120.00132 * 119.99533 * 4 2 1 6 6 C 1.37879 * 119.99492 * 299.99610 * 4 2 1 7 7 N 1.31516 * 120.00293 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47162 * 90.00284 * 8 6 4 10 10 H 1.48497 * 109.47218 * 209.99988 * 8 6 4 11 11 H 1.48498 * 109.47209 * 330.00119 * 8 6 4 12 12 N 1.46902 * 109.46785 * 240.00236 * 2 1 3 13 13 C 1.46841 * 111.00373 * 300.87846 * 12 2 1 14 14 C 1.53039 * 109.52785 * 185.84075 * 13 12 2 15 15 C 1.53116 * 109.27528 * 300.81820 * 14 13 12 16 16 C 1.53116 * 109.16162 * 57.65410 * 15 14 13 17 17 H 1.08995 * 109.50524 * 62.28780 * 16 15 14 18 18 C 1.53005 * 109.50453 * 182.40440 * 16 15 14 19 19 C 1.46851 * 111.00209 * 65.08955 * 12 2 1 20 20 H 1.09007 * 109.45594 * 294.16615 * 19 12 2 21 21 C 1.52994 * 109.46263 * 54.13987 * 19 12 2 22 22 O 1.42894 * 109.47118 * 63.65639 * 21 19 12 23 23 H 1.09001 * 109.46517 * 299.99966 * 1 2 3 24 24 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47577 * 59.99818 * 1 2 3 26 26 H 0.96995 * 119.99919 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.45830 * 305.85405 * 13 12 2 28 28 H 1.09004 * 109.46510 * 65.81724 * 13 12 2 29 29 H 1.09001 * 109.50288 * 180.87525 * 14 13 12 30 30 H 1.08996 * 109.53371 * 60.77959 * 14 13 12 31 31 H 1.08997 * 109.52216 * 297.75094 * 15 14 13 32 32 H 1.09002 * 109.57209 * 177.59105 * 15 14 13 33 33 H 1.08996 * 109.46980 * 179.80208 * 18 16 15 34 34 H 1.08997 * 109.46940 * 299.80620 * 18 16 15 35 35 H 1.08999 * 109.47107 * 59.80363 * 18 16 15 36 36 H 1.09005 * 109.46956 * 183.65306 * 21 19 12 37 37 H 1.09002 * 109.47558 * 303.65226 * 21 19 12 38 38 H 0.96699 * 114.00626 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1205 4.0077 9 1 3.6299 -0.5460 4.4121 10 1 1.3435 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7117 12 7 2.0196 -0.6925 -1.1995 13 6 1.5317 -2.0767 -1.2441 14 6 2.1758 -2.8084 -2.4239 15 6 1.8221 -2.0808 -3.7239 16 6 2.2981 -0.6284 -3.6324 17 1 3.3825 -0.6069 -3.5246 18 6 1.8955 0.1222 -4.9035 19 6 1.6505 0.0401 -2.4176 20 1 0.5666 0.0304 -2.5327 21 6 2.1390 1.4860 -2.3106 22 8 3.5663 1.5030 -2.2445 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 0.7084 1.1607 3.4844 27 1 1.7934 -2.5841 -0.3156 28 1 0.4483 -2.0763 -1.3646 29 1 1.8015 -3.8313 -2.4659 30 1 3.2583 -2.8219 -2.2973 31 1 0.7423 -2.1016 -3.8707 32 1 2.3135 -2.5730 -4.5632 33 1 2.2315 1.1569 -4.8363 34 1 2.3570 -0.3543 -5.7683 35 1 0.8111 0.0986 -5.0112 36 1 1.8090 2.0466 -3.1852 37 1 1.7281 1.9427 -1.4101 38 1 3.9464 2.3895 -2.1756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688651220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -54.263874 kcal Electronic energy + Delta-G solvation = -17366.971861 eV Core-core repulsion = 14823.049596 eV Total energy + Delta-G solvation = -2543.922265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17543 -35.74593 -34.75812 -32.20971 -31.63033 -28.50984 -26.73407 -25.16582 -25.10152 -22.76278 -20.65812 -19.87196 -18.46098 -16.68198 -16.18529 -15.22403 -14.90382 -14.36189 -13.96729 -13.66883 -13.37347 -12.67123 -12.62908 -12.36644 -12.32047 -11.88354 -11.60976 -11.28570 -11.02544 -10.91374 -10.75216 -10.60234 -10.40039 -10.20902 -10.05443 -9.95035 -9.74100 -9.42256 -9.06941 -8.73768 -8.28315 -6.95140 -5.96269 -3.98201 3.34456 3.40398 3.44229 4.45347 4.82910 4.98947 5.22910 5.24139 5.36223 5.40348 5.66152 5.83270 5.86918 5.88708 5.94237 6.02227 6.16511 6.24396 6.26698 6.35430 6.39159 6.56075 6.60685 6.73662 6.79401 6.90342 6.95148 6.97840 7.20791 7.59217 7.77976 7.91648 8.20388 8.26616 8.49742 8.72818 9.08096 9.66134 11.11142 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033630 B = 0.008927 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.379819 B = 3135.701490 C = 3482.180688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.208 3.792 3 H 0.046 0.954 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.516 5.516 13 C 0.062 3.938 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.081 4.081 17 H 0.084 0.916 18 C -0.144 4.144 19 C 0.092 3.908 20 H 0.039 0.961 21 C 0.081 3.919 22 O -0.551 6.551 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.005 0.995 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.020 0.980 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -0.835 -11.256 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.102 3.898 3 H 0.063 0.937 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.240 5.240 13 C -0.066 4.066 14 C -0.156 4.156 15 C -0.150 4.150 16 C -0.100 4.100 17 H 0.102 0.898 18 C -0.202 4.202 19 C -0.017 4.017 20 H 0.057 0.943 21 C 0.003 3.997 22 O -0.354 6.354 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.899 -1.399 -11.120 11.243 hybrid contribution -0.710 0.278 0.914 1.190 sum 0.189 -1.121 -10.206 10.269 Atomic orbital electron populations 1.22435 1.01321 0.99295 1.00280 1.19356 0.89219 0.95062 0.86122 0.93679 1.21138 1.30050 1.12285 0.89717 0.92010 1.24918 0.95341 0.95208 0.98935 1.69881 1.37339 1.23277 1.23221 0.86539 0.78472 0.80024 0.82596 1.20752 1.21476 1.19998 1.62185 1.59474 1.00950 1.01377 1.21950 0.95737 0.90808 0.98110 1.21636 1.01520 0.97634 0.94825 1.21620 1.00052 0.95819 0.97526 1.21082 1.01810 0.93842 0.93223 0.89755 1.21853 1.00577 1.00369 0.97414 1.21556 0.95879 0.92270 0.91974 0.94303 1.22328 0.81809 0.96707 0.98889 1.86617 1.19642 1.31968 1.97124 0.89434 0.95210 0.97614 0.93151 0.89948 0.96202 0.92807 0.91579 0.93013 0.92832 0.92693 0.93186 0.93425 0.94827 0.92751 0.79164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.28 37.16 0.31 -3.94 16 2 C 0.21 5.28 1.96 -68.87 -0.14 5.14 16 3 H 0.05 1.25 5.84 -51.93 -0.30 0.94 16 4 C -0.49 -13.68 7.86 -34.44 -0.27 -13.95 16 5 H 0.06 1.73 6.77 -52.49 -0.36 1.38 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.52 -11.39 4.40 -220.14 -0.97 -12.35 16 13 C 0.06 1.27 4.66 -3.84 -0.02 1.25 16 14 C -0.12 -1.98 6.09 -26.65 -0.16 -2.14 16 15 C -0.11 -1.71 5.29 -26.61 -0.14 -1.85 16 16 C -0.08 -1.31 2.23 -90.54 -0.20 -1.51 16 17 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 18 C -0.14 -1.92 8.87 37.16 0.33 -1.59 16 19 C 0.09 1.74 1.31 -67.72 -0.09 1.65 16 20 H 0.04 0.76 6.73 -51.92 -0.35 0.41 16 21 C 0.08 1.43 5.82 37.15 0.22 1.65 16 22 O -0.55 -9.81 12.75 -35.23 -0.45 -10.26 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 25 H 0.00 0.11 6.65 -51.93 -0.35 -0.23 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.08 1.83 6.35 -51.93 -0.33 1.50 16 28 H 0.02 0.41 6.62 -51.93 -0.34 0.07 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.71 6.53 -51.93 -0.34 0.37 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.50 6.65 -51.93 -0.35 0.16 16 37 H 0.05 1.08 6.00 -51.93 -0.31 0.77 16 38 H 0.36 4.75 9.12 45.56 0.42 5.16 16 LS Contribution 281.57 15.07 4.24 4.24 Total: -1.00 -29.65 281.57 -7.15 -36.80 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.33 Total: 3.78 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -0.26 Total: -13.82 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.34 Total: -37.40 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.45 Total: -10.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.65 -7.15 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688651220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.463 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds