Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47370 * 2 1 4 4 C 1.50697 * 109.47631 * 120.00554 * 2 1 3 5 5 H 1.07996 * 120.00132 * 119.99533 * 4 2 1 6 6 C 1.37879 * 119.99492 * 299.99610 * 4 2 1 7 7 N 1.31516 * 120.00293 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99814 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47162 * 90.00284 * 8 6 4 10 10 H 1.48497 * 109.47218 * 209.99988 * 8 6 4 11 11 H 1.48498 * 109.47209 * 330.00119 * 8 6 4 12 12 N 1.46902 * 109.46785 * 240.00236 * 2 1 3 13 13 C 1.46841 * 111.00373 * 300.87846 * 12 2 1 14 14 C 1.53039 * 109.52785 * 185.84075 * 13 12 2 15 15 C 1.53116 * 109.27528 * 300.81820 * 14 13 12 16 16 C 1.53116 * 109.16162 * 57.65410 * 15 14 13 17 17 H 1.08995 * 109.50524 * 62.28780 * 16 15 14 18 18 C 1.53005 * 109.50453 * 182.40440 * 16 15 14 19 19 C 1.46851 * 111.00209 * 65.08955 * 12 2 1 20 20 H 1.09007 * 109.45594 * 294.16615 * 19 12 2 21 21 C 1.52994 * 109.46263 * 54.13987 * 19 12 2 22 22 O 1.42894 * 109.47118 * 63.65639 * 21 19 12 23 23 H 1.09001 * 109.46517 * 299.99966 * 1 2 3 24 24 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47577 * 59.99818 * 1 2 3 26 26 H 0.96995 * 119.99919 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.45830 * 305.85405 * 13 12 2 28 28 H 1.09004 * 109.46510 * 65.81724 * 13 12 2 29 29 H 1.09001 * 109.50288 * 180.87525 * 14 13 12 30 30 H 1.08996 * 109.53371 * 60.77959 * 14 13 12 31 31 H 1.08997 * 109.52216 * 297.75094 * 15 14 13 32 32 H 1.09002 * 109.57209 * 177.59105 * 15 14 13 33 33 H 1.08996 * 109.46980 * 179.80208 * 18 16 15 34 34 H 1.08997 * 109.46940 * 299.80620 * 18 16 15 35 35 H 1.08999 * 109.47107 * 59.80363 * 18 16 15 36 36 H 1.09005 * 109.46956 * 183.65306 * 21 19 12 37 37 H 1.09002 * 109.47558 * 303.65226 * 21 19 12 38 38 H 0.96699 * 114.00626 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1205 4.0077 9 1 3.6299 -0.5460 4.4121 10 1 1.3435 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7117 12 7 2.0196 -0.6925 -1.1995 13 6 1.5317 -2.0767 -1.2441 14 6 2.1758 -2.8084 -2.4239 15 6 1.8221 -2.0808 -3.7239 16 6 2.2981 -0.6284 -3.6324 17 1 3.3825 -0.6069 -3.5246 18 6 1.8955 0.1222 -4.9035 19 6 1.6505 0.0401 -2.4176 20 1 0.5666 0.0304 -2.5327 21 6 2.1390 1.4860 -2.3106 22 8 3.5663 1.5030 -2.2445 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 0.7084 1.1607 3.4844 27 1 1.7934 -2.5841 -0.3156 28 1 0.4483 -2.0763 -1.3646 29 1 1.8015 -3.8313 -2.4659 30 1 3.2583 -2.8219 -2.2973 31 1 0.7423 -2.1016 -3.8707 32 1 2.3135 -2.5730 -4.5632 33 1 2.2315 1.1569 -4.8363 34 1 2.3570 -0.3543 -5.7683 35 1 0.8111 0.0986 -5.0112 36 1 1.8090 2.0466 -3.1852 37 1 1.7281 1.9427 -1.4101 38 1 3.9464 2.3895 -2.1756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688651220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -75.737255 kcal Electronic energy + Delta-G solvation = -17367.903017 eV Core-core repulsion = 14823.049596 eV Total energy + Delta-G solvation = -2544.853421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70110 -37.19717 -36.41913 -34.09264 -33.07522 -30.30230 -28.17026 -27.18523 -26.56076 -24.38552 -22.08250 -21.48629 -20.03422 -18.26473 -18.01845 -17.01054 -16.54117 -16.01777 -15.39137 -15.17283 -14.93304 -14.47875 -14.04543 -13.81447 -13.69649 -13.57251 -13.14264 -12.90983 -12.69120 -12.53670 -12.46821 -12.35509 -12.14405 -11.93748 -11.74578 -11.39345 -11.28525 -10.81140 -10.73565 -10.62707 -10.31909 -8.69167 -8.09725 -6.18666 1.40797 1.41611 1.51720 2.43125 3.19100 3.32572 3.60772 3.94778 3.95930 4.10509 4.33590 4.47359 4.50448 4.53758 4.68136 4.75195 4.76367 4.81823 4.89911 4.95327 4.99167 5.02434 5.12297 5.18841 5.21076 5.38293 5.40955 5.45249 5.59543 5.67209 5.76250 5.85993 6.26425 6.59079 6.86887 6.96426 7.06909 7.49954 8.96480 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033630 B = 0.008927 C = 0.008039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.379819 B = 3135.701490 C = 3482.180688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.018 0.982 4 C -0.511 4.511 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.528 5.528 13 C 0.063 3.937 14 C -0.112 4.112 15 C -0.109 4.109 16 C -0.076 4.076 17 H 0.065 0.935 18 C -0.138 4.138 19 C 0.086 3.914 20 H 0.035 0.965 21 C 0.084 3.916 22 O -0.568 6.568 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.023 0.977 26 H 0.260 0.740 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -1.504 -12.891 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.035 0.965 4 C -0.549 4.549 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.252 5.252 13 C -0.066 4.066 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.094 4.094 17 H 0.083 0.917 18 C -0.196 4.196 19 C -0.023 4.023 20 H 0.053 0.947 21 C 0.006 3.994 22 O -0.374 6.374 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.065 -2.061 -12.771 12.980 hybrid contribution -0.737 0.517 1.403 1.667 sum 0.328 -1.544 -11.368 11.477 Atomic orbital electron populations 1.22213 1.00908 0.98823 0.99783 1.19080 0.89347 0.93652 0.87130 0.96474 1.21396 1.30143 1.12191 0.91213 0.93111 1.25652 0.95532 0.95909 1.01662 1.70001 1.38034 1.24268 1.23829 0.85586 0.77984 0.79044 0.79180 1.20396 1.20824 1.19541 1.62107 1.59767 1.01758 1.01594 1.21943 0.95748 0.90174 0.98696 1.21590 1.00603 0.98641 0.94129 1.21623 1.00793 0.94960 0.97255 1.21035 1.00295 0.94859 0.93255 0.91670 1.21797 1.01300 1.00207 0.96254 1.21743 0.95964 0.92947 0.91643 0.94722 1.22264 0.81806 0.96317 0.98968 1.86557 1.19678 1.34043 1.97144 0.92085 0.95468 0.95787 0.93079 0.92719 0.96633 0.90452 0.92495 0.92250 0.90070 0.92467 0.91170 0.92557 0.91370 0.95716 0.76927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.28 71.98 0.60 -7.28 16 2 C 0.22 11.17 1.96 44.17 0.09 11.26 16 3 H 0.02 1.00 5.84 -2.39 -0.01 0.99 16 4 C -0.51 -29.07 7.86 25.60 0.20 -28.87 16 5 H 0.05 2.93 6.77 -2.91 -0.02 2.91 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.77 11.32 21.45 0.24 -53.52 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 N -0.53 -23.52 4.40 -850.40 -3.74 -27.26 16 13 C 0.06 2.55 4.66 86.33 0.40 2.96 16 14 C -0.11 -3.56 6.09 30.65 0.19 -3.37 16 15 C -0.11 -2.96 5.29 30.67 0.16 -2.80 16 16 C -0.08 -2.27 2.23 -10.74 -0.02 -2.30 16 17 H 0.06 2.24 7.57 -2.39 -0.02 2.22 16 18 C -0.14 -3.16 8.87 71.98 0.64 -2.52 16 19 C 0.09 3.15 1.31 44.93 0.06 3.21 16 20 H 0.04 1.31 6.73 -2.38 -0.02 1.29 16 21 C 0.08 2.94 5.82 71.98 0.42 3.36 16 22 O -0.57 -19.90 12.75 -148.98 -1.90 -21.80 16 23 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 24 H 0.03 1.31 6.52 -2.39 -0.02 1.30 16 25 H 0.02 1.06 6.65 -2.39 -0.02 1.04 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.05 2.49 6.35 -2.39 -0.02 2.48 16 28 H 0.02 0.64 6.62 -2.39 -0.02 0.62 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.28 6.53 -2.39 -0.02 1.27 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.89 6.65 -2.38 -0.02 1.87 16 37 H 0.02 1.00 6.00 -2.39 -0.01 0.99 16 38 H 0.38 9.71 9.12 -74.06 -0.68 9.03 16 Total: -1.00 -64.35 281.57 0.17 -64.18 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.37 Total: 16.73 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.18 Total: -25.31 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.50 Total: -80.78 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.90 Total: -21.80 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.35 0.17 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688651220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.558 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds